Rapid Replacement of SARS-CoV-2 Variants by Delta and Subsequent Arrival of Omicron, Uganda, 2021.

Nicholas Bbosa ORCID logo; Deogratius Ssemwanga; Hamidah Namagembe; Ronald Kiiza; Jocelyn Kiconco; John Kayiwa; Tom Lutalo; Julius Lutwama; Alfred Ssekagiri; Isaac Ssewanyana; +13 more... Susan Nabadda; Henry Kyobe-Bbosa; Jennifer Giandhari; Sureshnee Pillay; Upasana Ramphal; Yajna Ramphal; Yeshnee Naidoo; Derek Tshiabuila; Houriiyah Tegally; Emmanuel J San; Eduan Wilkinson; Tulio de Oliveira; Pontiano Kaleebu ORCID logo; (2022) Rapid Replacement of SARS-CoV-2 Variants by Delta and Subsequent Arrival of Omicron, Uganda, 2021. EMERGING INFECTIOUS DISEASES, 28 (5). pp. 1021-1025. ISSN 1080-6040 DOI: 10.3201/eid2805.220121
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Genomic surveillance in Uganda showed rapid replacement of severe acute respiratory syndrome coronavirus 2 over time by variants, dominated by Delta. However, detection of the more transmissible Omicron variant among travelers and increasing community transmission highlight the need for near-real-time genomic surveillance and adherence to infection control measures to prevent future pandemic waves.


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