Research Centres (23573)

Centre for Epidemic Preparedness and Response (305) Month Authors/Creators Item Type Full Text

Article

Social mixing patterns relevant to infectious diseases spread by close contact in urban Blantyre, Malawi. (2022) Thindwa, Deus; Jambo, Kondwani C; Ojal, John; MacPherson, Peter; Dennis Phiri, Mphatso; Pinsent, Amy; Khundi, McEwen; Chiume, Lingstone; Gallagher, Katherine E; Heyderman, Robert S; Corbett, Elizabeth L; French, Neil; Flasche, Stefan

Complexity and evidence in health sector decision-making: lessons from tuberculosis infection prevention in South Africa. (2022) Perera, Shehani; Parkhurst, Justin; Diaconu, Karin; Bozzani, Fiammetta; Vassall, Anna; Grant, Alison; Kielmann, Karina

Near-Complete Genome Sequences of Measles Virus Strains from 10 Years of Uganda Country-wide Surveillance. (2022) Namuwulya, Prossy; Bukenya, Henry; Tushabe, Phionah; Tweyongyere, Robert; Bwogi, Josephine; Cotten, Matthew; Phan, My VT

Integrating economic and health evidence to inform Covid-19 policy in low- and middle- income countries. (2022) Vassall, Anna; Sweeney, Sedona; Barasa, Edwine; Prinja, Shankar; Keogh-Brown, Marcus R; Tarp Jensen, Henning; Smith, Richard; Baltussen, Rob; M Eggo, Rosalind; Jit, Mark

Defining the Genes Required for Survival of Mycobacterium bovis in the Bovine Host Offers Novel Insights into the Genetic Basis of Survival of Pathogenic Mycobacteria. (2022) Gibson, Amanda J; Stiens, Jennifer; Passmore, Ian J; Faulkner, Valwynne; Miculob, Josephous; Willcocks, Sam; Coad, Michael; Berg, Stefan; Werling, Dirk; Wren, Brendan W; Nobeli, Irene; Villarreal-Ramos, Bernardo; Kendall, Sharon L

Tailoring immunisation programmes in a time of SARS-CoV-2: What can be learnt by comparing the findings of childhood and COVID-19 vaccine evaluation studies in an underserved population? (2022) Kasstan, Ben; Letley, Louise; Mounier-Jack, Sandra; Klynman, Nicole; Gaskell, Katherine M; Eggo, Rosalind M; Marks, Michael; Chantler, Tracey

Effectiveness of case-area targeted interventions including vaccination on the control of epidemic cholera: protocol for a prospective observational study. (2022) Ratnayake, Ruwan; Peyraud, Nicolas; Ciglenecki, Iza; Gignoux, Etienne; Lightowler, Maria; Azman, Andrew S; Gakima, Primitive; Ouamba, Jean Patrick; Sagara, Joseph Amadomon; Ndombe, Rollin; Mimbu, Nana; Ascorra, Alexandra; Epicentre and MSF CATI Working Group; Welo, Placide Okitayemba; Mukamba Musenga, Elisabeth; Miwanda, Berthe; Boum, Yap; Checchi, Francesco; Edmunds, W John; Luquero, Francisco; Porten, Klaudia; Finger, Flavio

Spike Protein Cleavage-Activation in the Context of the SARS-CoV-2 P681R Mutation: an Analysis from Its First Appearance in Lineage A.23.1 Identified in Uganda. (2022) Lubinski, Bailey; Frazier, Laura E; Phan, My VT; Bugembe, Daniel L; Cunningham, Jessie L; Tang, Tiffany; Daniel, Susan; Cotten, Matthew; Jaimes, Javier A; Whittaker, Gary R

Population-based surveillance for congenital zika virus syndrome: a latent class analysis of recorded cases from 2015-2018. (2022) Paixao, Enny S; Rodrigues, Laura C; Costa, Maria da Conceição N; de Carvalho-Sauer, Rita de Cassia Oliveira; Oliveira, Wanderson K; Cardim, Luciana L; Schuler-Faccini, Lavinia; Andrade, Roberto FS; Rodrigues, Moreno S; Brickley, Elizabeth B; Veiga, Rafael V; Costa, Larissa C; Carmo, Eduardo H; Smeeth, Liam; Barreto, Mauricio L; Teixeira, Maria Gloria

Evidence for influenza and RSV interaction from 10 years of enhanced surveillance in Nha Trang, Vietnam, a modelling study. (2022) Waterlow, Naomi R; Toizumi, Michiko; van Leeuwen, Edwin; Thi Nguyen, Hien-Anh; Myint-Yoshida, Lay; Eggo, Rosalind M; Flasche, Stefan

The importance of fine-scale predictors of wild boar habitat use in an isolated population. (2022) Bacigalupo, Sonny A; Chang, Yu-Mei; Dixon, Linda K; Gubbins, Simon; Kucharski, Adam J; Drewe, Julian A

Socioeconomic disparities associated with symptomatic Zika virus infections in pregnancy and congenital microcephaly: A spatiotemporal analysis from Goiânia, Brazil (2016 to 2020). (2022) Rosado, Luiza Emylce Pela; Aquino, Erika Carvalho de; Brickley, Elizabeth Bailey; França, Divania Dias da Silva; Silva, Fluvia Pereira Amorim; Silva, Vinicius Lemes da; Lopes, Angela Ferreira; Turchi, Marilia Dalva

Transmission networks of SARS-CoV-2 in Coastal Kenya during the first two waves: A retrospective genomic study. (2022) Agoti, Charles N; Ochola-Oyier, Lynette Isabella; Dellicour, Simon; Mohammed, Khadija Said; Lambisia, Arnold W; de Laurent, Zaydah R; Morobe, John M; Mburu, Maureen W; Omuoyo, Donwilliams O; Ongera, Edidah M; Ndwiga, Leonard; Maitha, Eric; Kitole, Benson; Suleiman, Thani; Mwakinangu, Mohamed; Nyambu, John K; Otieno, John; Salim, Barke; Musyoki, Jennifer; Murunga, Nickson; Otieno, Edward; Kiiru, John N; Kasera, Kadondi; Amoth, Patrick; Mwangangi, Mercy; Aman, Rashid; Kinyanjui, Samson; Warimwe, George; Phan, My; Agweyu, Ambrose; Cotten, Matthew; Barasa, Edwine; Tsofa, Benjamin; Nokes, D James; Bejon, Philip; Githinji, George

Estimating the duration of antibody positivity and likely time of Leptospira infection using data from a cross-sectional serological study in Fiji. (2022) Rees, Eleanor M; Lau, Colleen L; Kama, Mike; Reid, Simon; Lowe, Rachel; Kucharski, Adam J

Risk factors for SARS-CoV-2 seroprevalence following the first pandemic wave in UK healthcare workers in a large NHS Foundation Trust. (2022) Colton, Hayley; Hodgson, David; Hornsby, Hailey; Brown, Rebecca; Mckenzie, Joanne; Bradley, Kirsty L; James, Cameron; Lindsey, Benjamin B; Birch, Sarah; Marsh, Louise; Wood, Steven; Bayley, Martin; Dickson, Gary; James, David C; Nicklin, Martin J; Sayers, Jon R; Zafred, Domen; Rowland-Jones, Sarah L; Kudesia, Goura; Kucharski, Adam; CMMID COVID-19 Working Group; Darton, Thomas C; de Silva, Thushan I; Collini, Paul J

Longitudinal Follow-Up of Gross Motor Function in Children with Congenital Zika Virus Syndrome from a Cohort in Rio de Janeiro, Brazil. (2022) Hamanaka, Tatiana; Ribeiro, Carla Trevisan M; Pone, Sheila; Gomes, Saint Clair; Nielsen-Saines, Karin; Brickley, Elizabeth B; Moreira, Maria Elisabeth; Pone, Marcos

Investigation of a SARS-CoV-2 Outbreak at an Automotive Manufacturing Site in England. (2022) Raja, Amber I; van Veldhoven, Karin; Ewuzie, Adanna; Frost, Gillian; Sandys, Vince; Atkinson, Barry; Nicholls, Ian; Graham, Alice; Higgins, Hannah; Coldwell, Matthew; Simpson, Andrew; Cooke, Joan; Bennett, Allan; Barber, Chris; Morgan, Derek; Atchison, Christina; Keen, Chris; Fletcher, Tony; Pearce, Neil; Brickley, Elizabeth B; Chen, Yiqun

Transmission dynamics of SARS-CoV-2 in a strictly-Orthodox Jewish community in the UK. (2022) Waites, William; Pearson, Carl AB; Gaskell, Katherine M; House, Thomas; Pellis, Lorenzo; Johnson, Marina; Gould, Victoria; Hunt, Adam; Stone, Neil RH; Kasstan, Ben; Chantler, Tracey; Lal, Sham; Roberts, Chrissy H; Goldblatt, David; CMMID COVID-19 Working Group; Marks, Michael; Eggo, Rosalind M

Cost of TB prevention and treatment in the Philippines in 2017. (2022) Capeding, TPJ; Rosa, JD; Lam, H; Gaviola, DG; Garfin, AMC; Hontiveros, C; Cunnama, L; Laurence, YV; Kitson, N; Vassall, A; Sweeney, S; Garcia-Baena, I

Development of an educational package for the universal human papillomavirus (HPV) vaccination programme: a co-production study with young people and key informants. (2022) Fisher, Harriet; Chantler, Tracey; Finn, Adam; Kesten, Joanna; Hickman, Matthew; Letley, Louise; Mounier-Jack, Sandra; Thomas, Clare; Worthington, Katie; Yates, Julie; Audrey, Suzanne

Socioeconomic risk markers of arthropod-borne virus (arbovirus) infections: a systematic literature review and meta-analysis. (2022) Power, Grace M; Vaughan, Aisling M; Qiao, Luxi; Sanchez Clemente, Nuria; Pescarini, Julia M; Paixão, Enny S; Lobkowicz, Ludmila; Raja, Amber I; Portela Souza, André; Barreto, Mauricio Lima; Brickley, Elizabeth B

Using high-resolution contact networks to evaluate SARS-CoV-2 transmission and control in large-scale multi-day events. (2022) Pung, Rachael; Firth, Josh A; Spurgin, Lewis G; Singapore CruiseSafe working group; CMMID COVID-19 working group; Lee, Vernon J; Kucharski, Adam J

Co-circulation of Chikungunya Virus during the 2015-2017 Zika Virus Outbreak in Pernambuco, Brazil: An Analysis of the Microcephaly Epidemic Research Group Pregnancy Cohort. (2022) Lobkowicz, Ludmila; Miranda-Filho, Demócrito de Barros; Montarroyos, Ulisses Ramos; Martelli, Celina Maria Turchi; Barreto de Araújo, Thalia Velho; De Souza, Wayner Vieira; Bezerra, Luciana Caroline Albuquerque; Dhalia, Rafael; Marques, Ernesto TA; Clemente, Nuria Sanchez; Webster, Jayne; Vaughan, Aisling; Webb, Emily L; Brickley, Elizabeth B; Alencar Ximenes, Ricardo Arraes de; Microcephaly Epidemic Research Group picture_as_pdf

A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV. (2022) Ndlangisa, Kedibone M; du Plessis, Mignon; Lo, Stephanie; de Gouveia, Linda; Chaguza, Chrispin; Antonio, Martin; Kwambana-Adams, Brenda; Cornick, Jennifer; Everett, Dean B; Dagan, Ron; Hawkins, Paulina A; Beall, Bernard; Corso, Alejandra; Grassi Almeida, Samanta Cristine; Ochoa, Theresa J; Obaro, Stephen; Shakoor, Sadia; Donkor, Eric S; Gladstone, Rebecca A; Ho, Pak Leung; Paragi, Metka; Doiphode, Sanjay; Srifuengfung, Somporn; Ford, Rebecca; Moïsi, Jennifer; Saha, Samir K; Bigogo, Godfrey; Sigauque, Betuel; Eser, Özgen Köseoglu; Elmdaghri, Naima; Titov, Leonid; Turner, Paul; Kumar, KL Ravi; Kandasamy, Rama; Egorova, Ekaterina; Ip, Margaret; Breiman, Robert F; Klugman, Keith P; McGee, Lesley; Bentley, Stephen D; von Gottberg, Anne; The Global Pneumococcal Sequencing Consortium

The legacy of ZikaPLAN: a transnational research consortium addressing Zika. (2022) Wilder-Smith, Annelies; Brickley, Elizabeth B; Ximenes, Ricardo Arraes de Alencar; Miranda-Filho, Demócrito de Barros; Turchi Martelli, Celina Maria; Solomon, Tom; Jacobs, Bart C; Pardo, Carlos A; Osorio, Lyda; Parra, Beatriz; Lant, Suzannah; Willison, Hugh J; Leonhard, Sonja; Turtle, Lance; Ferreira, Maria Lúcia Brito; de Oliveira Franca, Rafael Freitas; Lambrechts, Louis; Neyts, Johan; Kaptein, Suzanne; Peeling, Rosanna; Boeras, Deborah; Logan, James; Dolk, Helen; Orioli, Ieda M; Neumayr, Andreas; Lang, Trudie; Baker, Bonny; Massad, Eduardo; Preet, Raman

Impact of non-pharmaceutical interventions on SARS-CoV-2 outbreaks in English care homes: a modelling study. (2022) Rosello, Alicia; Barnard, Rosanna C; Smith, David RM; Evans, Stephanie; Grimm, Fiona; Davies, Nicholas G; Centre for Mathematical Modelling of Infectious Diseases COVID-1; Deeny, Sarah R; Knight, Gwenan M; Edmunds, W John

The influence of risk perceptions on close contact frequency during the SARS-CoV-2 pandemic. (2022) Wambua, James; Hermans, Lisa; Coletti, Pietro; Verelst, Frederik; Willem, Lander; Jarvis, Christopher I; Gimma, Amy; Wong, Kerry LM; Lajot, Adrien; Demarest, Stefaan; Edmunds, W John; Faes, Christel; Beutels, Philippe; Hens, Niel

Effective surveillance of variants. (2022) Kucharski, Adam J; Cohen, Cheryl

The impact of local vaccine coverage and recent incidence on measles transmission in France between 2009 and 2018. (2022) Robert, Alexis; Kucharski, Adam J; Funk, Sebastian

Protocol for a phase 3 trial to evaluate the effectiveness and safety of a heterologous, two-dose vaccine for Ebola virus disease in the Democratic Republic of the Congo. (2022) Watson-Jones, Deborah; Kavunga-Membo, Hugo; Grais, Rebecca F; Ahuka, Steve; Roberts, Natalie; Edmunds, W John; Choi, Edward M; Roberts, Chrissy H; Edwards, Tansy; Camacho, Anton; Lees, Shelley; Leyssen, Maarten; Spiessens, Bart; Luhn, Kerstin; Douoguih, Macaya; Hatchett, Richard; Bausch, Daniel G; Muyembe, Jean-Jacques; DRC-EB-001 protocol writing team

Long-Term Health-Related Quality of Life in Non-Hospitalized Coronavirus Disease 2019 (COVID-19) Cases With Confirmed Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection in England: Longitudinal Analysis and Cross-Sectional Comparison With Controls. (2022) Sandmann, Frank G; Tessier, Elise; Lacy, Joanne; Kall, Meaghan; Van Leeuwen, Edwin; Charlett, Andre; Eggo, Rosalind M; Dabrera, Gavin; Edmunds, W John; Ramsay, Mary; Campbell, Helen; Amirthalingam, Gayatri; Jit, Mark

Financial impact of COVID-19 on TB patients in India. (2022) Chatterjee, S; Das, P; Vassall, A

Genomic diversity and antimicrobial resistance among non-typhoidal Salmonella associated with human disease in The Gambia. (2022) Darboe, Saffiatou; Bradbury, Richard S; Phelan, Jody; Kanteh, Abdoulie; Muhammad, Abdul-Khalie; Worwui, Archibald; Yang, Shangxin; Nwakanma, Davis; Perez-Sepulveda, Blanca; Kariuki, Samuel; Kwambana-Adams, Brenda; Antonio, Martin

Time to integrate epidemiological and economic models for TB. (2022) Sumner, T; Jensen, HT; Keogh-Brown, MR; Vassall, A

The Evolving Usefulness of the Test-negative Design in Studying Risk Factors for COVID-19. (2022) Vandenbroucke, Jan P; Brickley, Elizabeth B; Pearce, Neil; Vandenbroucke-Grauls, Christina MJE

Mortality from Congenital Zika Syndrome - Nationwide Cohort Study in Brazil. (2022) Paixao, Enny S; Cardim, Luciana L; Costa, Maria CN; Brickley, Elizabeth B; de Carvalho-Sauer, Rita CO; Carmo, Eduardo H; Andrade, Roberto FS; Rodrigues, Moreno S; Veiga, Rafael V; Costa, Larissa C; Moore, Cynthia A; França, Giovanny VA; Smeeth, Liam; Rodrigues, Laura C; Barreto, Mauricio L; Teixeira, Maria G

Longitudinal Systemic and Mucosal Immune Responses to SARS-CoV-2 Infection. (2022) Wright, Peter F; Prevost-Reilly, Alejandra C; Natarajan, Harini; Brickley, Elizabeth B; Connor, Ruth I; Wieland-Alter, Wendy F; Miele, Anna S; Weiner, Joshua A; Nerenz, Robert D; Ackerman, Margaret E

Transient internalization of Campylobacter jejuni in Amoebae enhances subsequent invasion of human cells. (2022) Nasher, Fauzy; Wren, Brendan W

Association between oral anticoagulants and COVID-19-related outcomes: a population-based cohort study. (2022) Wong, Angel Ys; Tomlinson, Laurie; Brown, Jeremy P; Elson, William; Walker, Alex J; Schultze, Anna; Morton, Caroline E; Evans, David; Inglesby, Peter; MacKenna, Brian; Bhaskaran, Krishnan; Rentsch, Christopher T; Powell, Emma; Williamson, Elizabeth; Croker, Richard; Bacon, Seb; Hulme, William; Bates, Chris; Curtis, Helen J; Mehrkar, Amir; Cockburn, Jonathan; McDonald, Helen I; Mathur, Rohini; Wing, Kevin; Forbes, Harriet; Eggo, Rosalind M; Evans, Stephen Jw; Smeeth, Liam; Goldacre, Ben; Douglas, Ian J; (The OpenSAFELY Collaborative)

Ebola Virus Glycoprotein IgG Seroprevalence in Community Previously Affected by Ebola, Sierra Leone. (2022) Manno, Daniela; Ayieko, Philip; Ishola, David; Afolabi, Muhammed O; Rogers, Baimba; Baiden, Frank; Serry-Bangura, Alimamy; Bah, Osman M; Köhn, Brian; Swaray, Ibrahim; Owusu-Kyei, Kwabena; Otieno, Godfrey T; Kowuor, Dickens; Tindanbil, Daniel; Smout, Elizabeth; Robinson, Cynthia; Keshinro, Babajide; Foster, Julie; Gallagher, Katherine; Lowe, Brett; Douoguih, Macaya; Leigh, Bailah; Greenwood, Brian; Watson-Jones, Deborah

Regional-based within-year seasonal variations in influenza-related health outcomes across mainland China: a systematic review and spatio-temporal analysis. (2022) Diamond, Charlie; Gong, Hui; Sun, Fiona Yueqian; Liu, Yang; Quilty, Billy J; Jit, Mark; Yang, Juan; Yu, Hongjie; Edmunds, W John; Baguelin, Marc

SARS-CoV-2 antibodies protect against reinfection for at least 6 months in a multicentre seroepidemiological workplace cohort. (2022) Finch, Emilie; Lowe, Rachel; Fischinger, Stephanie; de St Aubin, Michael; Siddiqui, Sameed M; Dayal, Diana; Loesche, Michael A; Rhee, Justin; Beger, Samuel; Hu, Yiyuan; Gluck, Matthew J; Mormann, Benjamin; Hasdianda, Mohammad A; Musk, Elon R; Alter, Galit; Menon, Anil S; Nilles, Eric J; Kucharski, Adam J; CMMID COVID-19 working group and the SpaceX COVID-19 Cohort Coll

Widespread sharing of pneumococcal strains in a rural African setting: proximate villages are more likely to share similar strains that are carried at multiple timepoints. (2022) Senghore, Madikay; Chaguza, Chrispin; Bojang, Ebrima; Tientcheu, Peggy-Estelle; Bancroft, Rowan E; Lo, Stephanie W; Gladstone, Rebecca A; McGee, Lesley; Worwui, Archibald; Foster-Nyarko, Ebenezer; Ceesay, Fatima; Okoi, Catherine Bi; Klugman, Keith P; Breiman, Robert F; Bentley, Stephen D; Adegbola, Richard; Antonio, Martin; Hanage, William P; Kwambana-Adams, Brenda A

COVID-19 vaccination beliefs, attitudes, and behaviours among health and social care workers in the UK: A mixed-methods study. (2022) Bell, Sadie; Clarke, Richard M; Ismail, Sharif A; Ojo-Aromokudu, Oyinkansola; Naqvi, Habib; Coghill, Yvonne; Donovan, Helen; Letley, Louise; Paterson, Pauline; Mounier-Jack, Sandra

Women's views on accepting COVID-19 vaccination during and after pregnancy, and for their babies: a multi-methods study in the UK. (2022) Skirrow, Helen; Barnett, Sara; Bell, Sadie; Riaposova, Lucia; Mounier-Jack, Sandra; Kampmann, Beate; Holder, Beth

Audiological follow-up of children with congenital Zika syndrome. (2022) Muniz, Lilian F; Maciel, Rebeka JF; Ramos, Danielle S; Albuquerque, Kátia MG; Leão, Ângela C; Van Der Linden, Vanessa; Paixão, Enny S; Brickley, Elizabeth B; Cordeiro, Marli T; Leitão, Gabriella GS; Caldas, Silvio S; Leal, Mariana C

Identification of missed viruses by metagenomic sequencing of clinical respiratory samples from Kenya. (2022) Phan, My VT; Agoti, Charles N; Munywoki, Patrick K; Otieno, Grieven P; Ngama, Mwanajuma; Kellam, Paul; Cotten, Matthew; Nokes, D James

Unexposed populations and potential COVID-19 hospitalisations and deaths in European countries as per data up to 21 November 2021. (2022) Chapman, Lloyd AC; Barnard, Rosanna C; Russell, Timothy W; Abbott, Sam; van Zandvoort, Kevin; Davies, Nicholas G; Kucharski, Adam J

Field evaluation of the performance of seven Antigen Rapid diagnostic tests for the diagnosis of SARs-CoV-2 virus infection in Uganda. (2022) Bwogi, Josephine; Lutalo, Tom; Tushabe, Phionah; Bukenya, Henry; Eliku, James Peter; Ssewanyana, Isaac; Nabadda, Susan; Nsereko, Christopher; Cotten, Matthew; Downing, Robert; Lutwama, Julius; Kaleebu, Pontiano; EPI Laboratory team; UVRI -COVID 19 Technical team