Items where Research Centre is "Centre for Epidemic Preparedness and Response"

Research Centres (23573)

Centre for Epidemic Preparedness and Response (305) Month Authors/Creators Item Type Full Text

December 2021

Using system dynamics modelling to estimate the costs of relaxing health system constraints: a case study of tuberculosis prevention and control interventions in South Africa. (2021) Bozzani, Fiammetta M; Diaconu, Karin; Gomez, Gabriela B; Karat, Aaron S; Kielmann, Karina; Grant, Alison D; Vassall, Anna

Probing Differences in Gene Essentiality Between the Human and Animal Adapted Lineages of the Mycobacterium tuberculosis Complex Using TnSeq. (2021) Gibson, Amanda J; Passmore, Ian J; Faulkner, Valwynne; Xia, Dong; Nobeli, Irene; Stiens, Jennifer; Willcocks, Sam; Clark, Taane G; Sobkowiak, Ben; Werling, Dirk; Villarreal-Ramos, Bernardo; Wren, Brendan W; Kendall, Sharon L

Cohort Profile: The 100 Million Brazilian Cohort. (2021) Barreto, Mauricio L; Ichihara, Maria Yury; Pescarini, Julia M; Ali, M Sanni; Borges, Gabriela L; Fiaccone, Rosemeire L; Ribeiro-Silva, Rita de Cássia; Teles, Carlos A; Almeida, Daniela; Sena, Samila; Carreiro, Roberto P; Cabral, Liliana; Almeida, Bethania A; Barbosa, George CG; Pita, Robespierre; Barreto, Marcos E; Mendes, Andre AF; Ramos, Dandara O; Brickley, Elizabeth B; Bispo, Nivea; Machado, Daiane B; Paixao, Enny S; Rodrigues, Laura C; Smeeth, Liam

Linkage of Whole Genome Sequencing, Epidemiological, and Clinical Data to Understand the Genetic Diversity and Clinical Outcomes of Shigella flexneri among Men Who Have Sex with Men in England. (2021) Mitchell, Holly D; Thomson, Nicholas R; Jenkins, Claire; Dallman, Timothy J; Painset, Anaïs; Kirwan, Peter; Delpech, Valerie; Mikhail, Amy FW; Field, Nigel; Hughes, Gwenda

Data collection for outbreak investigations: process for defining a minimal data set using a Delphi approach. (2021) Perrocheau, Anne; Brindle, Hannah; Roberts, Chrissy; Murthy, Srinivas; Shetty, Sharmila; Martin, Antonio Isidro Carrion; Marks, Michael; Schenkel, Karl; “Minimum Variables for Outbreak Investigation Working Group of t

Cost-effectiveness of bedaquiline, pretomanid and linezolid for treatment of extensively drug-resistant tuberculosis in South Africa, Georgia and the Philippines. (2021) Gomez, Gabriela Beatriz; Siapka, Mariana; Conradie, Francesca; Ndjeka, Norbert; Garfin, Anna Marie Celina; Lomtadze, Nino; Avaliani, Zaza; Kiria, Nana; Malhotra, Shelly; Cook-Scalise, Sarah; Juneja, Sandeep; Everitt, Daniel; Spigelman, Melvin; Vassall, Anna

Stark choices: exploring health sector costs of policy responses to COVID-19 in low-income and middle-income countries. (2021) Torres-Rueda, Sergio; Sweeney, Sedona; Bozzani, Fiammetta; Naylor, Nichola R; Baker, Tim; Pearson, Carl; Eggo, Rosalind; Procter, Simon R; Davies, Nicholas; Quaife, Matthew; Kitson, Nichola; Keogh-Brown, Marcus R; Jensen, Henning Tarp; Saadi, Nuru; Khan, Mishal; Huda, Maryam; Kairu, Angela; Zaidi, Raza; Barasa, Edwine; Jit, Mark; Vassall, Anna

SARS-CoV-2 Variants, South Sudan, January-March 2021. (2021) Bugembe, Daniel Lule; Phan, My VT; Abias, Abe G; Ayei, James; Deng, Lul Lojok; Lako, Richard Lino Loro; Rumunu, John; Kaleebu, Pontiano; Wamala, Joseph Francis; Hm, Juma John; Lodiongo, Dennis Kenyi; Bunga, Sudhir; Cotten, Matthew

Migration and outbreaks of vaccine-preventable disease in Europe: a systematic review. (2021) Deal, Anna; Halliday, Rae; Crawshaw, Alison F; Hayward, Sally E; Burnard, Amelia; Rustage, Kieran; Carter, Jessica; Mehrotra, Anushka; Knights, Felicity; Campos-Matos, Ines; Majeed, Azeem; Friedland, Jon S; Edelstein, Michael; Mounier-Jack, Sandra; Hargreaves, Sally; European Society of Clinical Microbiology and Infectious Disease

Cost of TB services in healthcare facilities in Kenya (No 3). (2021) Kairu, A; Orangi, S; Oyando, R; Kabia, E; Nguhiu, P; Ong Ang O, J; Mwirigi, N; Laurence, YV; Kitson, N; Garcia Baena, I; Vassall, A; Barasa, E; Sweeney, S; Cunnama, L

Neighbourhood-level income and Zika virus infection during pregnancy in Recife, Pernambuco, Brazil: an ecological perspective, 2015-2017. (2021) Lobkowicz, Ludmila; Power, Grace M; De Souza, Wayner Vieira; Montarroyos, Ulisses Ramos; Martelli, Celina Maria Turchi; de Araùjo, Thalia Velho Barreto; Bezerra, Luciana Caroline Albuquerque; Dhalia, Rafael; Marques, Ernesto TA; Miranda-Filho, Demócrito de Barros; Brickley, Elizabeth B; Ximenes, Ricardo Arraes de Alencar

Models of COVID-19 vaccine prioritisation: a systematic literature search and narrative review. (2021) Saadi, Nuru; Chi, Y-Ling; Ghosh, Srobana; Eggo, Rosalind M; McCarthy, Ciara V; Quaife, Matthew; Dawa, Jeanette; Jit, Mark; Vassall, Anna

November 2021

Within and between classroom transmission patterns of seasonal influenza among primary school students in Matsumoto city, Japan. (2021) Endo, Akira; Uchida, Mitsuo; Hayashi, Naoki; Liu, Yang; Atkins, Katherine E; Kucharski, Adam J; Funk, Sebastian

Vaccine Confidence and Hesitancy at the Start of COVID-19 Vaccine Deployment in the UK: An Embedded Mixed-Methods Study. (2021) Roberts, Chrissy H; Brindle, Hannah; Rogers, Nina T; Eggo, Rosalind M; Enria, Luisa; Lees, Shelley

Electronic Data Management for Vaccine Trials in Low Resource Settings: Upgrades, Scalability, and Impact of ODK. (2021) Marks, Michael; Lal, Sham; Brindle, Hannah; Gsell, Pierre-Stéphane; MacGregor, Matthew; Stott, Callum; van de Rijdt, Martijn; Almazor, Guillermo Gutiérrez; Golia, Suman; Watson, Conall; Diallo, Abdourahamane; Toure, Alhassane; Houlihan, Catherine; Keating, Patrick; Martin, Hélène; Restrepo, Ana-Maria Henao; Anokwa, Yaw; Roberts, Chrissy H

Interactions between fecal gut microbiome, enteric pathogens, and energy regulating hormones among acutely malnourished rural Gambian children. (2021) Nabwera, Helen M; Espinoza, Josh L; Worwui, Archibald; Betts, Modupeh; Okoi, Catherine; Sesay, Abdul K; Bancroft, Rowan; Agbla, Schadrac C; Jarju, Sheikh; Bradbury, Richard S; Colley, Mariama; Jallow, Amadou T; Liu, Jie; Houpt, Eric R; Prentice, Andrew M; Antonio, Martin; Bernstein, Robin M; Dupont, Christopher L; Kwambana-Adams, Brenda A

Epidemiological and Immunological Features of Obesity and SARS-CoV-2. (2021) Nilles, Eric J; Siddiqui, Sameed M; Fischinger, Stephanie; Bartsch, Yannic C; de St. Aubin, Michael; Zhou, Guohai; Gluck, Matthew J; Berger, Samuel; Rhee, Justin; Petersen, Eric; Mormann, Benjamin; Loesche, Michael; Hu, Yiyuan; Chen, Zhilin; Yu, Jingyou; Gebre, Makda; Atyeo, Caroline; Gorman, Matthew J; Zhu, Alex Lee; Burke, John; Slein, Matthew; Hasdianda, Mohammad A; Jambaulikar, Guruprasad; Boyer, Edward W; Sabeti, Pardis C; Barouch, Dan H; Julg, Boris; Kucharski, Adam J; Musk, Elon R; Lauffenburger, Douglas A; Alter, Galit; Menon, Anil S

October 2021

Quantifying previous SARS-CoV-2 infection through mixture modelling of antibody levels. (2021) Bottomley, C; Otiende, M; Uyoga, S; Gallagher, K; Kagucia, EW; Etyang, AO; Mugo, D; Gitonga, J; Karanja, H; Nyagwange, J; Adetifa, IMO; Agweyu, A; Nokes, DJ; Warimwe, GM; Scott, JAG

A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa. (2021) Wilkinson, Eduan; Giovanetti, Marta; Tegally, Houriiyah; San, James E; Lessells, Richard; Cuadros, Diego; Martin, Darren P; Rasmussen, David A; Zekri, Abdel-Rahman N; Sangare, Abdoul K; Ouedraogo, Abdoul-Salam; Sesay, Abdul K; Priscilla, Abechi; Kemi, Adedotun-Sulaiman; Olubusuyi, Adewunmi M; Oluwapelumi, Adeyemi OO; Hammami, Adnène; Amuri, Adrienne A; Sayed, Ahmad; Ouma, Ahmed EO; Elargoubi, Aida; Ajayi, Nnennaya A; Victoria, Ajogbasile F; Kazeem, Akano; George, Akpede; Trotter, Alexander J; Yahaya, Ali A; Keita, Alpha K; Diallo, Amadou; Kone, Amadou; Souissi, Amal; Chtourou, Amel; Gutierrez, Ana V; Page, Andrew J; Vinze, Anika; Iranzadeh, Arash; Lambisia, Arnold; Ismail, Arshad; Rosemary, Audu; Sylverken, Augustina; Femi, Ayoade; Ibrahimi, Azeddine; Marycelin, Baba; Oderinde, Bamidele S; Bolajoko, Bankole; Dhaala, Beatrice; Herring, Belinda L; Njanpop-Lafourcade, Berthe-Marie; Kleinhans, Bronwyn; McInnis, Bronwyn; Tegomoh, Bryan; Brook, Cara; Pratt, Catherine B; Scheepers, Cathrine; Akoua-Koffi, Chantal G; Agoti, Charles N; Peyrefitte, Christophe; Daubenberger, Claudia; Morang'a, Collins M; Nokes, D James; Amoako, Daniel G; Bugembe, Daniel L; Park, Danny; Baker, David; Doolabh, Deelan; Ssemwanga, Deogratius; Tshiabuila, Derek; Bassirou, Diarra; Amuzu, Dominic SY; Goedhals, Dominique; Omuoyo, Donwilliams O; Maruapula, Dorcas; Foster-Nyarko, Ebenezer; Lusamaki, Eddy K; Simulundu, Edgar; Ong'era, Edidah M; Ngabana, Edith N; Shumba, Edwin; El Fahime, Elmostafa; Lokilo, Emmanuel; Mukantwari, Enatha; Philomena, Eromon; Belarbi, Essia; Simon-Loriere, Etienne; Anoh, Etilé A; Leendertz, Fabian; Ajili, Faida; Enoch, Fakayode O; Wasfi, Fares; Abdelmoula, Fatma; Mosha, Fausta S; Takawira, Faustinos T; Derrar, Fawzi; Bouzid, Feriel; Onikepe, Folarin; Adeola, Fowotade; Muyembe, Francisca M; Tanser, Frank; Dratibi, Fred A; Mbunsu, Gabriel K; Thilliez, Gaetan; Kay, Gemma L; Githinji, George; van Zyl, Gert; Awandare, Gordon A; Schubert, Grit; Maphalala, Gugu P; Ranaivoson, Hafaliana C; Lemriss, Hajar; Anise, Happi; Abe, Haruka; Karray, Hela H; Nansumba, Hellen; Elgahzaly, Hesham A; Gumbo, Hlanai; Smeti, Ibtihel; Ayed, Ikhlas B; Odia, Ikponmwosa; Ben Boubaker, Ilhem Boutiba; Gaaloul, Imed; Gazy, Inbal; Mudau, Innocent; Ssewanyana, Isaac; Konstantinus, Iyaloo; Lekana-Douk, Jean B; Makangara, Jean-Claude C; Tamfum, Jean-Jacques M; Heraud, Jean-Michel; Shaffer, Jeffrey G; Giandhari, Jennifer; Li, Jingjing; Yasuda, Jiro; Mends, Joana Q; Kiconco, Jocelyn; Morobe, John M; Gyapong, John O; Okolie, Johnson C; Kayiwa, John T; Edwards, Johnathan A; Gyamfi, Jones; Farah, Jouali; Nakaseegu, Joweria; Ngoi, Joyce M; Namulondo, Joyce; Andeko, Julia C; Lutwama, Julius J; O'Grady, Justin; Siddle, Katherine; Adeyemi, Kayode T; Tumedi, Kefentse A; Said, Khadija M; Hae-Young, Kim; Duedu, Kwabena O; Belyamani, Lahcen; Fki-Berrajah, Lamia; Singh, Lavanya; Martins, Leonardo de O; Tyers, Lynn; Ramuth, Magalutcheemee; Mastouri, Maha; Aouni, Mahjoub; El Hefnawi, Mahmoud; Matsheka, Maitshwarelo I; Kebabonye, Malebogo; Diop, Mamadou; Turki, Manel; Paye, Marietou; Nyaga, Martin M; Mareka, Mathabo; Damaris, Matoke-Muhia; Mburu, Maureen W; Mpina, Maximillian; Nwando, Mba; Owusu, Michael; Wiley, Michael R; Youtchou, Mirabeau T; Ayekaba, Mitoha O; Abouelhoda, Mohamed; Seadawy, Mohamed G; Khalifa, Mohamed K; Sekhele, Mooko; Ouadghiri, Mouna; Diagne, Moussa M; Mwenda, Mulenga; Allam, Mushal; Phan, My VT; Abid, Nabil; Touil, Nadia; Rujeni, Nadine; Kharrat, Najla; Ismael, Nalia; Dia, Ndongo; Mabunda, Nedio; Hsiao, Nei-Yuan; Silochi, Nelson B; Nsenga, Ngoy; Gumede, Nicksy; Mulder, Nicola; Ndodo, Nnaemeka; Razanajatovo, Norosoa H; Iguosadolo, Nosamiefan; Judith, Oguzie; Kingsley, Ojide C; Sylvanus, Okogbenin; Peter, Okokhere; Femi, Oladiji; Idowu, Olawoye; Testimony, Olumade; Chukwuma, Omoruyi E; Ogah, Onwe E; Onwuamah, Chika K; Cyril, Oshomah; Faye, Ousmane; Tomori, Oyewale; Ondoa, Pascale; Combe, Patrice; Semanda, Patrick; Oluniyi, Paul E; Arnaldo, Paulo; Quashie, Peter K; Dussart, Philippe; Bester, Phillip A; Mbala, Placide K; Ayivor-Djanie, Reuben; Njouom, Richard; Phillips, Richard O; Gorman, Richmond; Kingsley, Robert A; Carr, Rosina AA; El Kabbaj, Saâd; Gargouri, Saba; Masmoudi, Saber; Sankhe, Safietou; Lawal, Salako B; Kassim, Samar; Trabelsi, Sameh; Metha, Samar; Kammoun, Sami; Lemriss, Sanaâ; Agwa, Sara HA; Calvignac-Spencer, Sébastien; Schaffner, Stephen F; Doumbia, Seydou; Mandanda, Sheila M; Aryeetey, Sherihane; Ahmed, Shymaa S; Elhamoumi, Siham; Andriamandimby, Soafy; Tope, Sobajo; Lekana-Douki, Sonia; Prosolek, Sophie; Ouangraoua, Soumeya; Mundeke, Steve A; Rudder, Steven; Panji, Sumir; Pillay, Sureshnee; Engelbrecht, Susan; Nabadda, Susan; Behillil, Sylvie; Budiaki, Sylvie L; van der Werf, Sylvie; Mashe, Tapfumanei; Aanniz, Tarik; Mohale, Thabo; Le-Viet, Thanh; Schindler, Tobias; Anyaneji, Ugochukwu J; Chinedu, Ugwu; Ramphal, Upasana; Jessica, Uwanibe; George, Uwem; Fonseca, Vagner; Enouf, Vincent; Gorova, Vivianne; Roshdy, Wael H; Ampofo, William K; Preiser, Wolfgang; Choga, Wonderful T; Bediako, Yaw; Naidoo, Yeshnee; Butera, Yvan; de Laurent, Zaydah R; Sall, Amadou A; Rebai, Ahmed; von Gottberg, Anne; Kouriba, Bourema; Williamson, Carolyn; Bridges, Daniel J; Chikwe, Ihekweazu; Bhiman, Jinal N; Mine, Madisa; Cotten, Matthew; Moyo, Sikhulile; Gaseitsiwe, Simani; Saasa, Ngonda; Sabeti, Pardis C; Kaleebu, Pontiano; Tebeje, Yenew K; Tessema, Sofonias K; Happi, Christian; Nkengasong, John; de Oliveira, Tulio

Sharing, synthesis and sustainability of data analysis for epidemic preparedness in Europe. (2021) Kucharski, Adam J; Hodcroft, Emma B; Kraemer, Moritz UG

MdaB and NfrA, Two Novel Reductases Important in the Survival and Persistence of the Major Enteropathogen Campylobacter jejuni. (2021) Nasher, Fauzy; Taylor, Aidan J; Elmi, Abdi; Lehri, Burhan; Ijaz, Umer Z; Baker, Dave; Goram, Richard; Lynham, Steven; Singh, Dipali; Stabler, Richard; Kelly, David J; Gundogdu, Ozan; Wren, Brendan W

COVID-19 vaccination in Sindh Province, Pakistan: A modelling study of health impact and cost-effectiveness. (2021) Pearson, Carl AB; Bozzani, Fiammetta; Procter, Simon R; Davies, Nicholas G; Huda, Maryam; Jensen, Henning Tarp; Keogh-Brown, Marcus; Khalid, Muhammad; Sweeney, Sedona; Torres-Rueda, Sergio; CHiL COVID-19 Working Group; CMMID COVID-19 Working Group; Eggo, Rosalind M; Vassall, Anna; Jit, Mark

Gross motor function in children with Congenital Zika Syndrome from Rio de Janeiro, Brazil. (2021) Ribeiro, Carla Trevisan M; Hamanaka, Tatiana; Pone, Sheila; Aibe, Mitsue Senra; Gomes, Saint Clair; Nielsen-Saines, Karin; Brickley, Elizabeth B; Moreira, Maria Elisabeth; Pone, Marcos

September 2021

Estimating the annual dengue force of infection from the age of reporting primary infections across urban centres in endemic countries. (2021) Biggs, Joseph R; Sy, Ava Kristy; Sherratt, Katharine; Brady, Oliver J; Kucharski, Adam J; Funk, Sebastian; Reyes, Mary Anne Joy; Quinones, Mary Ann; Jones-Warner, William; Avelino, Ferchito L; Sucaldito, Nemia L; Tandoc, Amado O; la Paz, Eva Cutiongco-de; Capeding, Maria Rosario Z; Padilla, Carmencita D; Hafalla, Julius Clemence R; Hibberd, Martin L

Modelling the persistence and control of Rift Valley fever virus in a spatially heterogeneous landscape. (2021) Tennant, Warren SD; Cardinale, Eric; Cêtre-Sossah, Catherine; Moutroifi, Youssouf; Le Godais, Gilles; Colombi, Davide; Spencer, Simon EF; Tildesley, Mike J; Keeling, Matt J; Charafouddine, Onzade; Colizza, Vittoria; Edmunds, W John; Métras, Raphaëlle

Shining the light on congenital syphilis: from TORCH to SCORTCH. (2021) Fifer, Helen; Hughes, Gwenda; Ladhani, Shamez

Evaluation of the performance of 25 SARS-CoV-2 serological rapid diagnostic tests using a reference panel of plasma specimens at the Uganda Virus Research Institute. (2021) Lutalo, Tom; Nalumansi, Aminah; Olara, Denis; Kayiwa, John; Ogwang, Bernard; Odwilo, Emmanuel; Watera, Christine; Balinandi, Stephen; Kiconco, Jocelyn; Nakaseegu, Joweria; Serwanga, Jennifer; Kikaire, Bernard; Ssemwanga, Deogratius; Abiko, Brendah; Nsereko, Christopher; Cotten, Matthew; Buule, Joshua; Lutwama, Julius; Downing, Robert; Kaleebu, Pontiano

Safety and immunogenicity of the two-dose heterologous Ad26.ZEBOV and MVA-BN-Filo Ebola vaccine regimen in children in Sierra Leone: a randomised, double-blind, controlled trial. (2021) Afolabi, Muhammed Olanrewaju; Ishola, David; Manno, Daniela; Keshinro, Babajide; Bokstal, Viki; Rogers, Baimba; Owusu-Kyei, Kwabena; Serry-Bangura, Alimamy; Swaray, Bob; Lowe, Brett; Kowuor, Dickens; Baiden, Frank; Mooney, Thomas; Smout, Elizabeth; Kohn, Brian; Otieno, Godfrey; Jusu, Morrison; Foster, Julie; Samai, Mohammed; Deen, Gibrilla-Fadlu; Larson, Heidi; Lees, Shelley; Goldstein, Nein; Gallagher, Katherine; Gaddah, Augustie; Heerwegh, Dirk; Callendret, Benoit; Luhn, Kerstin; Robinson, Cynthia; Greenwood, Brian; Leyssen, Maarten; Douoguih, Macaya; Leigh, Bailah; Watson-Jones, Deborah

Safety and long-term immunogenicity of the two-dose heterologous Ad26.ZEBOV and MVA-BN-Filo Ebola vaccine regimen in adults in Sierra Leone: a combined open-label, non-randomised stage 1, and a randomised, double-blind, controlled stage 2 trial. (2021) Ishola, David; Manno, Daniela; Afolabi, Muhammed O; Keshinro, Babajide; Bockstal, Viki; Rogers, Baimba; Owusu-Kyei, Kwabena; Serry-Bangura, Alimamy; Swaray, Ibrahim; Lowe, Brett; Kowuor, Dickens; Baiden, Frank; Mooney, Thomas; Smout, Elizabeth; Köhn, Brian; Otieno, Godfrey T; Jusu, Morrison; Foster, Julie; Samai, Mohamed; Deen, Gibrilla Fadlu; Larson, Heidi; Lees, Shelley; Goldstein, Neil; Gallagher, Katherine E; Gaddah, Auguste; Heerwegh, Dirk; Callendret, Benoit; Luhn, Kerstin; Robinson, Cynthia; Leyssen, Maarten; Greenwood, Brian; Douoguih, Macaya; Leigh, Bailah; Watson-Jones, Deborah; EBL3001 study group

Serial intervals in SARS-CoV-2 B.1.617.2 variant cases. (2021) Pung, Rachael; Mak, Tze Minn; CMMID COVID-19 working group; Kucharski, Adam J; Lee, Vernon J

Cost-effectiveness of a Community-based Hypertension Improvement Project (ComHIP) in Ghana: results from a modelling study. (2021) Pozo-Martin, Francisco; Akazili, James; Der, Reina; Laar, Amos; Adler, Alma J; Lamptey, Peter; Griffiths, Ulla K; Vassall, Anna

The Etiology of Childhood Pneumonia in The Gambia: Findings From the Pneumonia Etiology Research for Child Health (PERCH) Study. (2021) Howie, Stephen RC; Ebruke, Bernard E; McLellan, Jessica L; Deloria Knoll, Maria; Dione, Michel M; Feikin, Daniel R; Haddix, Meredith; Hammitt, Laura L; Machuka, Eunice M; Murdoch, David R; O'Brien, Katherine L; Ofordile, Ogochukwu; Olutunde, Oluyinka E; Parker, David; Prosperi, Christine; Salaudeen, Rasheed A; Shamsul, Arifin; Mackenzie, Grant; Antonio, Martin; Zaman, Syed MA

Toward Establishing Integrated, Comprehensive, and Sustainable Meningitis Surveillance in Africa to Better Inform Vaccination Strategies. (2021) Kwambana-Adams, Brenda Anna; Cohen, Adam L; Hampton, Lee; Nhantumbo, Aquino Albino; Heyderman, Robert S; Antonio, Martin; Bita, Andre; Mwenda, Jason Mathiu

August 2021

Origin of imported SARS-CoV-2 strains in The Gambia identified from whole genome sequences. (2021) Kanteh, Abdoulie; Manneh, Jarra; Jabang, Sona; Kujabi, Mariama A; Sanyang, Bakary; Oboh, Mary A; Bojang, Abdoulie; Jallow, Haruna S; Nwakanma, Davis; Secka, Ousman; Roca, Anna; Amambua-Ngwa, Alfred; Antonio, Martin; Baldeh, Ignatius; Forrest, Karen; Samateh, Ahmadou Lamin; D'Alessandro, Umberto; Sesay, Abdul Karim

The COVID-OUT study protocol: COVID-19 outbreak investigation to understand workplace SARS-CoV-2 transmission in the United Kingdom. (2021) Chen, Yiqun; Atchison, Christina; Atkinson, Barry; Barber, Chris; Bennett, Allan; Brickley, Elizabeth; Cooke, Joan; Dabrera, Gavin; Fishwick, David; Fletcher, Tony; Graham, Alice; Higgins, Hannah; Keen, Chris; Morgan, Derek; Noakes, Catherine; Pearce, Neil; Raja, Amber; Sandys, Vince; Stocks, Jill; van Tongeren, Martie; van Veldhoven, Karin; Verma, Arpana; Curran, Andrew

Delivering routine immunisations in London during the COVID-19 pandemic: lessons for future vaccine delivery. A mixed-methods study. (2021) Skirrow, Helen; Flynn, Charlotte; Heller, Abigail; Heffernan, Catherine; Mounier-Jack, Sandra; Chantler, Tracey

Unique protein features of SARS-CoV-2 relative to other Sarbecoviruses. (2021) Cotten, Matthew; Robertson, David L; Phan, My VT

Salivary DNA loads for human herpes viruses 6 and 7 are correlated with disease phenotype in Myalgic Encephalomyelitis/ Chronic Fatigue Syndrome. (2021) Lee, Ji-Sook; Lacerda, Eliana M; Nacul, Luis; Kingdon, Caroline C; Norris, Jasmin; O’Boyle, Shennae; Roberts, Chrissy H; Palla, Luigi; Riley, Eleanor M; Cliff, Jacqueline M

Emergence and spread of a SARS-CoV-2 lineage A variant (A.23.1) with altered spike protein in Uganda. (2021) Bugembe, Daniel Lule; Phan, My VT; Ssewanyana, Isaac; Semanda, Patrick; Nansumba, Hellen; Dhaala, Beatrice; Nabadda, Susan; O'Toole, Áine Niamh; Rambaut, Andrew; Kaleebu, Pontiano; Cotten, Matthew

July 2021

Epidemiological characteristics and temporal trends of new leprosy cases in Brazil: 2006 to 2017. (2021) Pescarini, Júlia Moreira; Teixeira, Camila Silveira Silva; Silva, Nívea Bispo da; Sanchez, Mauro Niskier; Natividade, Marcio Santos da; Rodrigues, Laura Cunha; Penna, Maria Lúcia Fernandes; Barreto, Maurício Lima; Brickley, Elizabeth B; Penna, Gerson Oliveira; Nery, Joilda Silva

Serological Evidence of Widespread Zika Transmission across the Philippines. (2021) Biggs, Joseph R; Sy, Ava Kristy; Brady, Oliver J; Kucharski, Adam J; Funk, Sebastian; Tu, Yun-Hung; Reyes, Mary Anne Joy; Quinones, Mary Ann; Jones-Warner, William; Ashall, James; Avelino, Ferchito L; Sucaldito, Nemia L; Tandoc, Amado O; Cutiongco-de la Paz, Eva; Capeding, Maria Rosario Z; Padilla, Carmencita D; Hibberd, Martin L; Hafalla, Julius Clemence R

Waiting times, patient flow, and occupancy density in South African primary health care clinics: implications for infection prevention and control. (2021) Karat, Aaron S; McCreesh, Nicky; Baisley, Kathy; Govender, Indira; Kallon, Idriss I; Kielmann, Karina; MacGregor, Hayley; Vassall, Anna; Yates, Tom A; Grant, Alison D

Impact of the introduction of pneumococcal conjugate vaccination on invasive pneumococcal disease and pneumonia in The Gambia: 10 years of population-based surveillance. (2021) Gambia Pneumococcal Surveillance Group; Mackenzie, Grant A; Hill, Philip C; Jeffries, David J; Ndiaye, Malick; Sahito, Shah M; Hossain, Ilias; Uchendu, Uchendu; Ameh, David; Adeyemi, Oyedeji; Pathirana, Jayani; Olatunji, Yekini; Abatan, Baderinwa; Muhammad, Bilquees S; Ahameefula, Ebirim; Fombah, Augustin E; Adeshola, Banjo; Lobga, Babila G; Saha, Debasish; Mackenzie, Roslyn; Odutola, Aderonke; Plumb, Ian D; Akano, Aliu; Ebruke, Bernard E; Ideh, Readon C; Kuti, Bankole; Githua, Peter; Olutunde, Emmanuel; Ofordile, Ogochukwu; Green, Edward; Usuf, Effua; Badji, Henry; Ikumapayi, Usman Na; Manjang, Ahmed; Salaudeen, Rasheed; Nsekpong, E David; Jarju, Sheikh; Antonio, Martin; Sambou, Sana; Ceesay, Lamin; Lowe-Jallow, Yamundow; Fofana, Sidat; Jasseh, Momodou; Mulholland, Kim; Knoll, Maria; Levine, Orin S; Howie, Stephen R; Adegbola, Richard A; Greenwood, Brian M; Corrah, Tumani

Detecting behavioural changes in human movement to inform the spatial scale of interventions against COVID-19. (2021) Gibbs, Hamish; Nightingale, Emily; Liu, Yang; Cheshire, James; Danon, Leon; Smeeth, Liam; Pearson, Carl AB; Grundy, Chris; LSHTM CMMID COVID-19 working group; Kucharski, Adam J; Eggo, Rosalind M

Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv. (2021) Sanoussi, C N'Dira; Coscolla, Mireia; Ofori-Anyinam, Boatema; Otchere, Isaac Darko; Antonio, Martin; Niemann, Stefan; Parkhill, Julian; Harris, Simon; Yeboah-Manu, Dorothy; Gagneux, Sebastien; Rigouts, Leen; Affolabi, Dissou; de Jong, Bouke C; Meehan, Conor J

Transmission modelling of environmentally persistent zoonotic diseases: a systematic review. (2021) Rees, Eleanor M; Minter, Amanda; Edmunds, W John; Lau, Colleen L; Kucharski, Adam J; Lowe, Rachel

June 2021

Epidemiology of the Rhinovirus (RV) in African and Southeast Asian Children: A Case-Control Pneumonia Etiology Study. (2021) Baillie, Vicky L; Moore, David P; Mathunjwa, Azwifarwi; Baggett, Henry C; Brooks, Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; Knoll, Maria Deloria; Kotloff, Karen L; Levine, Orin S; O'Brien, Katherine L; Scott, Anthony G; Thea, Donald M; Antonio, Martin; Awori, Juliet O; Driscoll, Amanda J; Fancourt, Nicholas SS; Higdon, Melissa M; Karron, Ruth A; Morpeth, Susan C; Mulindwa, Justin M; Murdoch, David R; Park, Daniel E; Prosperi, Christine; Rahman, Mohammed Ziaur; Rahman, Mustafizur; Salaudeen, Rasheed A; Sawatwong, Pongpun; Somwe, Somwe Wa; Sow, Samba O; Tapia, Milagritos D; Simões, Eric AF; Madhi, Shabir A

Temporal trends of SARS-CoV-2 seroprevalence during the first wave of the COVID-19 epidemic in Kenya. (2021) Adetifa, Ifedayo MO; Uyoga, Sophie; Gitonga, John N; Mugo, Daisy; Otiende, Mark; Nyagwange, James; Karanja, Henry K; Tuju, James; Wanjiku, Perpetual; Aman, Rashid; Mwangangi, Mercy; Amoth, Patrick; Kasera, Kadondi; Ng'ang'a, Wangari; Rombo, Charles; Yegon, Christine; Kithi, Khamisi; Odhiambo, Elizabeth; Rotich, Thomas; Orgut, Irene; Kihara, Sammy; Bottomley, Christian; Kagucia, Eunice W; Gallagher, Katherine E; Etyang, Anthony; Voller, Shirine; Lambe, Teresa; Wright, Daniel; Barasa, Edwine; Tsofa, Benjamin; Bejon, Philip; Ochola-Oyier, Lynette I; Agweyu, Ambrose; Scott, J Anthony G; Warimwe, George M

Intense and Mild First Epidemic Wave of Coronavirus Disease, The Gambia. (2021) Abatan, Baderinwa; Agboghoroma, Orighomisan; Akemoke, Fatai; Antonio, Martin; Awokola, Babatunde; Bittaye, Mustapha; Bojang, Abdoulie; Bojang, Kalifa; Brotherton, Helen; Cerami, Carla; Clarke, Ed; D'Alessandro, Umberto; de Silva, Thushan; Drammeh, Mariama; Forrest, Karen; Hofmann, Natalie; Jagne, Sherifo; Jah, Hawanatu; Jarju, Sheikh; Jaye, Assan; Jobe, Modou; Kampmann, Beate; Manjang, Buba; Martinez-Alvarez, Melisa; Mohammed, Nuredin; Nadjm, Behzad; Ndiath, Mamadou Ousmane; Nkereuwem, Esin; Nwakanma, Davis; Oko, Francis; Okoh, Emmanuel; Okomo, Uduak; Olatunji, Yekini; Oriero, Eniyou; Prentice, Andrew M; Roberts, Charles; Roca, Anna; Sabally, Babanding; Sambou, Sana; Samateh, Ahmadou; Secka, Ousman; Sesay, Abdul Karim; Singhateh, Yankuba; Susso, Bubacarr; Usuf, Effua; Vilane, Aminata; Wariri, Oghenebrume

Acceptability and feasibility of strategies to shield the vulnerable during the COVID-19 outbreak: a qualitative study in six Sudanese communities. (2021) Abdelmagid, Nada; Ahmed, Salma AE; Nurelhuda, Nazik; Zainalabdeen, Israa; Ahmed, Aljaile; Fadlallah, Mahmoud Ali; Dahab, Maysoon

Epidemic preparedness: Prenatal Zika virus screening during the next epidemic. (2021) Qiao, Luxi; Martelli, Celina M Turchi; Raja, Amber I; Sanchez Clemente, Nuria; de Araùjo, Thalia Velho Barreto; Ximenes, Ricardo Arraes de Alencar; Miranda-Filho, Demócrito de Barros; Ramond, Anna; Brickley, Elizabeth B

Building resource constraints and feasibility considerations in mathematical models for infectious disease: A systematic literature review. (2021) Bozzani, Fiammetta M; Vassall, Anna; Gomez, Gabriela B

Oropharyngeal Neisseria gonorrhoeae infections: should women be routinely tested? (2021) Fifer, Helen; Hughes, Gwenda

May 2021

Dynamics of SARS-CoV-2 with waning immunity in the UK population. (2021) Crellen, Thomas; Pi, Li; Davis, Emma L; Pollington, Timothy M; Lucas, Tim CD; Ayabina, Diepreye; Borlase, Anna; Toor, Jaspreet; Prem, Kiesha; Medley, Graham F; Klepac, Petra; Déirdre Hollingsworth, T

Strategies and action points to ensure equitable uptake of COVID-19 vaccinations: A national qualitative interview study to explore the views of undocumented migrants, asylum seekers, and refugees. (2021) Deal, Anna; Hayward, Sally E; Huda, Mashal; Knights, Felicity; Crawshaw, Alison F; Carter, Jessica; Hassan, Osama B; Farah, Yasmin; Ciftci, Yusuf; Rowland-Pomp, May; Rustage, Kieran; Goldsmith, Lucy; Hartmann, Monika; Mounier-Jack, Sandra; Burns, Rachel; Miller, Anna; Wurie, Fatima; Campos-Matos, Ines; Majeed, Azeem; Hargreaves, Sally; ESCMID Study Group for Infections in Travellers and Migrants (ES

Count the cost of disability caused by COVID-19. (2021) Briggs, Andrew; Vassall, Anna

The potential for vaccination-induced herd immunity against the SARS-CoV-2 B.1.1.7 variant. (2021) Hodgson, David; Flasche, Stefan; Jit, Mark; Kucharski, Adam J; CMMID COVID-19 Working Group; Centre for Mathematical Modelling of Infectious Disease (CMMID)

Quarantine and testing strategies in contact tracing for SARS-CoV-2: a modelling study. (2021) Quilty, Billy J; Clifford, Samuel; Hellewell, Joel; Russell, Timothy W; Kucharski, Adam J; Flasche, Stefan; Edmunds, W John; Centre for the Mathematical Modelling of Infectious Diseases COV

Automated download and clean-up of family-specific databases for kmer-based virus identification. (2021) Allesøe, Rosa L; Lemvigh, Camilla K; Phan, My VT; Clausen, Philip TLC; Florensa, Alfred F; Koopmans, Marion PG; Lund, Ole; Cotten, Matthew

Towards Evidence-based Control of Opisthorchis viverrini. (2021) Crellen, Thomas; Sithithaworn, Paiboon; Pitaksakulrat, Opal; Khuntikeo, Narong; Medley, Graham F; Hollingsworth, T Déirdre

April 2021

Estimating the effectiveness of routine asymptomatic PCR testing at different frequencies for the detection of SARS-CoV-2 infections. (2021) Hellewell, Joel; Russell, Timothy W; SAFER Investigators and Field Study Team; Crick COVID-19 Consortium; CMMID COVID-19 working group; Beale, Rupert; Kelly, Gavin; Houlihan, Catherine; Nastouli, Eleni; Kucharski, Adam J

Seroprevalence of Antibodies to Severe Acute Respiratory Syndrome Coronavirus 2 Among Healthcare Workers in Kenya. (2021) Etyang, Anthony O; Lucinde, Ruth; Karanja, Henry; Kalu, Catherine; Mugo, Daisy; Nyagwange, James; Gitonga, John; Tuju, James; Wanjiku, Perpetual; Karani, Angela; Mutua, Shadrack; Maroko, Hosea; Nzomo, Eddy; Maitha, Eric; Kamuri, Evanson; Kaugiria, Thuranira; Weru, Justus; Ochola, Lucy B; Kilimo, Nelson; Charo, Sande; Emukule, Namdala; Moracha, Wycliffe; Mukabi, David; Okuku, Rosemary; Ogutu, Monicah; Angujo, Barrack; Otiende, Mark; Bottomley, Christian; Otieno, Edward; Ndwiga, Leonard; Nyaguara, Amek; Voller, Shirine; Agoti, Charles N; Nokes, David James; Ochola-Oyier, Lynette Isabella; Aman, Rashid; Amoth, Patrick; Mwangangi, Mercy; Kasera, Kadondi; Ng'ang'a, Wangari; Adetifa, Ifedayo MO; Wangeci Kagucia, E; Gallagher, Katherine; Uyoga, Sophie; Tsofa, Benjamin; Barasa, Edwine; Bejon, Philip; Scott, J Anthony G; Agweyu, Ambrose; Warimwe, George M

Upper Respiratory Tract Co-detection of Human Endemic Coronaviruses and High-density Pneumococcus Associated With Increased Severity Among HIV-Uninfected Children Under 5 Years Old in the PERCH Study. (2021) Park, Daniel E; Higdon, Melissa M; Prosperi, Christine; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Steve RC; Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; Murdoch, David R; O'Brien, Katherine L; Scott, J Anthony G; Thea, Donald M; Antonio, Martin; Awori, Juliet O; Baillie, Vicky L; Bunthi, Charatdao; Kwenda, Geoffrey; Mackenzie, Grant A; Moore, David P; Morpeth, Susan C; Mwananyanda, Lawrence; Paveenkittiporn, Wantana; Ziaur Rahman, Mohammed; Rahman, Mustafizur; Rhodes, Julia; Sow, Samba O; Tapia, Milagritos D; Deloria Knoll, Maria

Zika Brazilian Cohorts (ZBC) Consortium: Protocol for an Individual Participant Data Meta-Analysis of Congenital Zika Syndrome after Maternal Exposure during Pregnancy. (2021) Alecrim, Maria das Graças Costa; Amorim, Melania Maria Ramos de; Araújo, Thalia Velho Barreto de; Brasil, Patrícia; Brickley, Elizabeth B; Castilho, Marcia da Costa; Coelho, Bernadete Perez; Cunha, Antônio José Ledo Alves da; Duarte, Geraldo; Estofolete, Cássia Fernanda; Gurgel, Ricardo Queiroz; Herrero-Silva, Juliana; Hofer, Cristina Barroso; Lopes, Aline Siqueira Alves; Martelli, Celina Maria Turchi; Melo, Adriana Suely de Oliveira; Miranda-Filho, Demócrito de Barros; Montarroyos, Ulisses Ramos; Moreira, Maria Elisabeth; Mussi-Pinhata, Marisa Marcia; Oliveira, Consuelo Silva de; Passos, Saulo Duarte; Prata-Barbosa, Arnaldo; Santos, Darci Neves Dos; Schuler-Faccini, Lavínia; Silva, Antônio Augusto Moura da; Siqueira, Isadora Cristina de; Sousa, Patrícia da Silva; Turchi, Marília Dalva; Ximenes, Ricardo Arraes de Alencar; Zara, Ana Laura de Sene Amâncio; Zika Brazilian Cohorts Consortium Zbc-Consortium

Near-Complete Genome Sequences of Eight Human Astroviruses Recovered from Diarrheal Stool Samples of Hospitalized Children in Coastal Kenya in 2019. (2021) Lambisia, Arnold W; Phan, My VT; de Laurent, Zaydah R; Cotten, Matthew; Nokes, D James; Agoti, Charles N

Cultural and linguistic adaptation of the multi-dimensional OXCAP-MH for outcome measurement of mental health among people living with HIV/AIDS in Uganda: the Luganda version. (2021) Katumba, Kenneth R; Laurence, Yoko V; Tenywa, Patrick; Ssebunnya, Joshua; Laszewska, Agata; Simon, Judit; Vassall, Anna; Kinyanda, Eugene; Greco, Giulia

March 2021

The impact of COVID-19 on TB: a review of the data. (2021) McQuaid, CF; Vassall, A; Cohen, T; Fiekert, K; White, RG

Interactions between timing and transmissibility explain diverse flavivirus dynamics in Fiji. (2021) Henderson, Alasdair D; Kama, Mike; Aubry, Maite; Hue, Stephane; Teissier, Anita; Naivalu, Taina; Bechu, Vinaisi D; Kailawadoko, Jimaima; Rabukawaqa, Isireli; Sahukhan, Aalisha; Hibberd, Martin L; Nilles, Eric J; Funk, Sebastian; Whitworth, Jimmy; Watson, Conall H; Lau, Colleen L; Edmunds, W John; Cao-Lormeau, Van-Mai; Kucharski, Adam J

Molecular diagnostic assays for the detection of common bacterial meningitis pathogens: A narrative review. (2021) Diallo, Kanny; Feteh, Vitalis F; Ibe, Lilian; Antonio, Martin; Caugant, Dominique A; du Plessis, Mignon; Deghmane, Ala-Eddine; Feavers, Ian M; Fernandez, Katya; Fox, LeAnne M; Rodrigues, Charlene MC; Ronveaux, Olivier; Taha, Muhamed-Kheir; Wang, Xin; Brueggemann, Angela B; Maiden, Martin CJ; Harrison, Odile B

UK prevalence of underlying conditions which increase the risk of severe COVID-19 disease: a point prevalence study using electronic health records. (2021) Walker, Jemma L; Grint, Daniel J; Strongman, Helen; Eggo, Rosalind M; Peppa, Maria; Minassian, Caroline; Mansfield, Kathryn E; Rentsch, Christopher T; Douglas, Ian J; Mathur, Rohini; Wong, Angel YS; Quint, Jennifer K; Andrews, Nick; Bernal, Jamie Lopez; Scott, J Anthony; Ramsay, Mary; Smeeth, Liam; McDonald, Helen I

Political economy analysis of the performance-based financing programme in Afghanistan. (2021) Salehi, Ahmad Shah; Blanchet, Karl; Vassall, Anna; Borghi, Josephine

Estimating the impact of reopening schools on the reproduction number of SARS-CoV-2 in England, using weekly contact survey data. (2021) Munday, James D; I Jarvis, Christopher; Gimma, Amy; Wong, Kerry LM; Zandvoort, Kevin van; Funk, Sebastian; Edmunds, W John

Zika-related adverse outcomes in a cohort of pregnant women with rash in Pernambuco, Brazil. (2021) Ximenes, Ricardo Arraes de Alencar; Miranda-Filho, Demócrito de Barros; Montarroyos, Ulisses Ramos; Martelli, Celina Maria Turchi; Araújo, Thalia Velho Barreto de; Brickley, Elizabeth; Albuquerque, Maria de Fátima Pessoa Militão de; Souza, Wayner Vieira; Ventura, Liana O; Ventura, Camila V; Gois, Adriana L; Leal, Mariana C; Oliveira, Danielle Maria da Silva; Eickmann, Sophie Helena; Carvalho, Maria Durce CG; Silva, Paula FS da; Rocha, Maria Angela Wanderley; Ramos, Regina Coeli Ferreira; Brandão-Filho, Sinval Pinto; Cordeiro, Marli Tenorio; Bezerra, Luciana Caroline Albuquerque; Dimech, George; Valongueiro, Sandra; Pires, Pedro; Castanha, Priscila Mayrelle da Silva; Dhalia, Rafael; Marques-Júnior, Ernesto Torres Azevedo; Rodrigues, Laura C; Microcephaly Epidemic Research Group (MERG)

Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. (2021) Davies, Nicholas G; Abbott, Sam; Barnard, Rosanna C; Jarvis, Christopher I; Kucharski, Adam J; Munday, James D; Pearson, Carl AB; Russell, Timothy W; Tully, Damien C; Washburne, Alex D; Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D; CMMID COVID-19 Working Group; COVID-19 Genomics UK (COG-UK) Consortium; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M; Funk, Sebastian; Jit, Mark; Atkins, Katherine E; Edmunds, W John

Cohort Profile: Centro de Integração de Dados e Conhecimentos para Saúde (CIDACS) Birth Cohort. (2021) Paixao, Enny S; Cardim, Luciana L; Falcao, Ila Rocha; Ortelan, Naiá; Silva, Natanael de Jesus; Rocha, Aline Dos Santos; Sena, Samila; Almeida, Daniela; Ramos, Dandara Oliveira; Alves, Flávia Jôse Oliveira; Bispo, Nívea; Ali, Sanni; Fiaccone, Rosemeire; Rodrigues, Moreno; Smeeth, Liam; Brickley, Elizabeth B; Cabral, Liliana; Teles, Carlos; Costa, Maria Conceição N; Ichihara, Maria Yury; Barreto, Mauricio L; Silva, Rita de Cássia Ribeiro; Teixeira, Maria Gloria

February 2021

The impact of local and national restrictions in response to COVID-19 on social contacts in England: a longitudinal natural experiment. (2021) Jarvis, Christopher I; Gimma, Amy; van Zandvoort, Kevin; Wong, Kerry LM; CMMID COVID-19 working group; Edmunds, W John

Trust and transparency in times of crisis: Results from an online survey during the first wave (April 2020) of the COVID-19 epidemic in the UK. (2021) Enria, Luisa; Waterlow, Naomi; Rogers, Nina Trivedy; Brindle, Hannah; Lal, Sham; Eggo, Rosalind M; Lees, Shelley; Roberts, Chrissy H

Infection patterns of endemic human coronaviruses in rural households in coastal Kenya. (2021) Nyaguthii, Dickson Machira; Otieno, Grieven P; Kombe, Ivy K; Koech, Dorothy; Mutunga, Martin; Medley, Graham F; Nokes, D James; Munywoki, Patrick K

Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history. (2021) Coscolla, Mireia; Gagneux, Sebastien; Menardo, Fabrizio; Loiseau, Chloé; Ruiz-Rodriguez, Paula; Borrell, Sonia; Otchere, Isaac Darko; Asante-Poku, Adwoa; Asare, Prince; Sánchez-Busó, Leonor; Gehre, Florian; Sanoussi, C N'Dira; Antonio, Martin; Affolabi, Dissou; Fyfe, Janet; Beckert, Patrick; Niemann, Stefan; Alabi, Abraham S; Grobusch, Martin P; Kobbe, Robin; Parkhill, Julian; Beisel, Christian; Fenner, Lukas; Böttger, Erik C; Meehan, Conor J; Harris, Simon R; de Jong, Bouke C; Yeboah-Manu, Dorothy; Brites, Daniela

Extracellular DNA, cell surface proteins and c-di-GMP promote biofilm formation in Clostridioides difficile. (2021) Dawson, Lisa F; Peltier, Johann; Hall, Catherine L; Harrison, Mark A; Derakhshan, Maria; Shaw, Helen A; Fairweather, Neil F; Wren, Brendan W

Alternate primers for whole-genome SARS-CoV-2 sequencing. (2021) Cotten, Matthew; Lule Bugembe, Dan; Kaleebu, Pontiano; V T Phan, My

SCHISTOX: An individual based model for the epidemiology and control of schistosomiasis. (2021) Graham, Matthew; Ayabina, Diepreye; Lucas, Tim Cd; Collyer, Benjamin S; Medley, Graham F; Hollingsworth, T Deirdre; Toor, Jaspreet

Molecular Epidemiology of Group A Streptococcus Infections in The Gambia. (2021) Jabang, Sona; Erhart, Annette; Darboe, Saffiatou; Baldeh, Aru-Kumba; Delforge, Valerie; Watson, Gabriella; Foster-Nyarko, Ebenezer; Salaudeen, Rasheed; Lawal, Bolarinde; Mackenzie, Grant; Botteaux, Anne; Antonio, Martin; Smeesters, Pierre R; On Behalf Of The Mrcg StrepA Study Group

Costs and outcomes of active and passive case detection for visceral leishmaniasis (Kala-Azar) to inform elimination strategies in Bihar, India. (2021) Dial, Natalie J; Medley, Graham F; Croft, Simon L; Mahapatra, Tanmay; Priyamvada, Khushbu; Sinha, Bikas; Palmer, Lucy; Terris-Prestholt, Fern

Revisiting Campylobacter jejuni Virulence and Fitness Factors: Role in Sensing, Adapting, and Competing. (2021) Elmi, Abdi; Nasher, Fauzy; Dorrell, Nick; Wren, Brendan; Gundogdu, Ozan

Extremely high SARS-CoV-2 seroprevalence in a strictly-Orthodox Jewish community in the UK. (2021) Gaskell, Katherine M; Johnson, Marina; Gould, Victoria; Hunt, Adam; Stone, Neil RH; Waites, William; Kasstan, Ben; Chantler, Tracey; Lal, Sham; Roberts, Chrissy H; Goldblatt, David; Eggo, Rosalind M; Marks, Michael

Transmission of COVID-19 in 282 clusters in Catalonia, Spain: a cohort study. (2021) Marks, Michael; Millat-Martinez, Pere; Ouchi, Dan; Roberts, Chrissy H; Alemany, Andrea; Corbacho-Monné, Marc; Ubals, Maria; Tobias, Aurelio; Tebé, Cristian; Ballana, Ester; Bassat, Quique; Baro, Bàrbara; Vall-Mayans, Martí; G-Beiras, Camila; Prat, Nuria; Ara, Jordi; Clotet, Bonaventura; Mitjà, Oriol

What next after GDP-based cost-effectiveness thresholds? (2021) Chi, Y-Ling; Blecher, Mark; Chalkidou, Kalipso; Culyer, Anthony; Claxton, Karl; Edoka, Ijeoma; Glassman, Amanda; Kreif, Noemi; Jones, Iain; Mirelman, Andrew J; Nadjib, Mardiati; Morton, Alec; Norheim, Ole Frithjof; Ochalek, Jessica; Prinja, Shankar; Ruiz, Francis; Teerawattananon, Yot; Vassall, Anna; Winch, Alexander

January 2021

Improving our understanding of the disproportionate incidence of STIs in heterosexual-identifying people of black Caribbean heritage: findings from a longitudinal study of sexual health clinic attendees in England. (2021) Bardsley, Megan; Wayal, Sonali; Blomquist, Paula; Mohammed, Hamish; Mercer, Catherine H; Hughes, Gwenda

Characteristics of Salmonella Recovered From Stools of Children Enrolled in the Global Enteric Multicenter Study. (2021) Kasumba, Irene N; Pulford, Caisey V; Perez-Sepulveda, Blanca M; Sen, Sunil; Sayed, Nurulla; Permala-Booth, Jasnehta; Livio, Sofie; Heavens, Darren; Low, Ross; Hall, Neil; Roose, Anna; Powell, Helen; Farag, Tamer; Panchalingham, Sandra; Berkeley, Lynette; Nasrin, Dilruba; Blackwelder, William C; Wu, Yukun; Tamboura, Boubou; Sanogo, Doh; Onwuchekwa, Uma; Sow, Samba O; Ochieng, John B; Omore, Richard; Oundo, Joseph O; Breiman, Robert F; Mintz, Eric D; O'Reilly, Ciara E; Antonio, Martin; Saha, Debasish; Hossain, M Jahangir; Mandomando, Inacio; Bassat, Quique; Alonso, Pedro L; Ramamurthy, T; Sur, Dipika; Qureshi, Shahida; Zaidi, Anita KM; Hossain, Anowar; Faruque, Abu SG; Nataro, James P; Kotloff, Karen L; Levine, Myron M; Hinton, Jay CD; Tennant, Sharon M

Use of non-steroidal anti-inflammatory drugs and risk of death from COVID-19: an OpenSAFELY cohort analysis based on two cohorts. (2021) Wong, Angel Ys; MacKenna, Brian; Morton, Caroline E; Schultze, Anna; Walker, Alex J; Bhaskaran, Krishnan; Brown, Jeremy P; Rentsch, Christopher T; Williamson, Elizabeth; Drysdale, Henry; Croker, Richard; Bacon, Seb; Hulme, William; Bates, Chris; Curtis, Helen J; Mehrkar, Amir; Evans, David; Inglesby, Peter; Cockburn, Jonathan; McDonald, Helen I; Tomlinson, Laurie; Mathur, Rohini; Wing, Kevin; Forbes, Harriet; Eggo, Rosalind M; Parry, John; Hester, Frank; Harper, Sam; Evans, Stephen Jw; Smeeth, Liam; Douglas, Ian J; Goldacre, Ben; OpenSAFELY Collaborative

Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks. (2021) Endo, Akira; Centre for the Mathematical Modelling of Infectious Diseases COV; Leclerc, Quentin J; Knight, Gwenan M; Medley, Graham F; Atkins, Katherine E; Funk, Sebastian; Kucharski, Adam J

o2geosocial: Reconstructing who-infected-whom from routinely collected surveillance data. (2021) Robert, Alexis; Funk, Sebastian; Kucharski, Adam J

The importance of local context in COVID-19 models. (2021) Eggo, Rosalind M; Dawa, Jeanette; Kucharski, Adam J; Cucunuba, Zulma M

Integrating epidemiological and genetic data with different sampling intensities into a dynamic model of respiratory syncytial virus transmission. (2021) Kombe, Ivy K; Agoti, Charles N; Munywoki, Patrick K; Baguelin, Marc; Nokes, D James; Medley, Graham F

Carriage Dynamics of Pneumococcal Serotypes in Naturally Colonized Infants in a Rural African Setting During the First Year of Life. (2021) Chaguza, Chrispin; Senghore, Madikay; Bojang, Ebrima; Lo, Stephanie W; Ebruke, Chinelo; Gladstone, Rebecca A; Tientcheu, Peggy-Estelle; Bancroft, Rowan E; Worwui, Archibald; Foster-Nyarko, Ebenezer; Ceesay, Fatima; Okoi, Catherine; McGee, Lesley; Klugman, Keith P; Breiman, Robert F; Barer, Michael R; Adegbola, Richard A; Antonio, Martin; Bentley, Stephen D; Kwambana-Adams, Brenda A

Genomic diversity of Escherichia coli from healthy children in rural Gambia. (2021) Foster-Nyarko, Ebenezer; Alikhan, Nabil-Fareed; Ikumapayi, Usman N; Sarwar, Golam; Okoi, Catherine; Tientcheu, Peggy-Estelle Maguiagueu; Defernez, Marianne; O'Grady, Justin; Antonio, Martin; Pallen, Mark J

The Prevalence of Adenoid Hypertrophy among Children with Zika Related Microcephaly. (2021) Leal, Mariana C; Seabra Ramos, Danielle; Pinto Bezerra, Thiago; Vilela, Ana Elizabeth SC; Maciel, Rebeka Jacques de F; Rodrigues, Mirella; Lira, Mariana; Cavalcanti, Karen Pena de Souza; Van der Linden, Vanessa; Cordeiro, Marli T; Miranda, Demócrito; Ximenes, Ricardo; Brickley, Elizabeth B; Caldas, Silvio S

Adverse fetal and neonatal outcomes in pregnancies with confirmed Zika Virus infection in Rio de Janeiro, Brazil: A cohort study. (2021) Souza, Juliana P; Méio, Maria Dalva BB; de Andrade, Laura Medeiros; Figueiredo, Mirza R; Gomes Junior, Saint Clair; Pereira Junior, Jose Paulo; Brickley, Elizabeth; Lopes Moreira, Maria Elisabeth

HIV infection and COVID-19 death: a population-based cohort analysis of UK primary care data and linked national death registrations within the OpenSAFELY platform. (2021) Bhaskaran, Krishnan; Rentsch, Christopher T; MacKenna, Brian; Schultze, Anna; Mehrkar, Amir; Bates, Chris J; Eggo, Rosalind M; Morton, Caroline E; Bacon, Sebastian CJ; Inglesby, Peter; Doughlas, Ian J; Walker, Alex J; McDonald, Helen; Cockburn, Jonathan; Williamson, Elizabeth J; Evans, David; Forbes, Harriet J; Curtis, Helen J; Hulme, William J; Parry, John; Hester, Frank; Harper, Sam; Evans, Stephen JW; Smeeth, Liam; Goldacre, Ben

Profiling of Haemophilus influenzae strain R2866 with carbohydrate-based covalent probes. (2021) Metier, Camille; Dow, Jennifer; Wootton, Hayley; Lynham, Steven; Wren, Brendan; Wagner, Gerd K

Effect of internationally imported cases on internal spread of COVID-19: a mathematical modelling study. (2021) Russell, Timothy W; Wu, Joseph T; Clifford, Sam; Edmunds, W John; Kucharski, Adam J; Jit, Mark; Centre for the Mathematical Modelling of Infectious Diseases COV

A Randomized Phase 4 Study of Immunogenicity and Safety After Monovalent Oral Type 2 Sabin Poliovirus Vaccine Challenge in Children Vaccinated with Inactivated Poliovirus Vaccine in Lithuania. (2021) Bandyopadhyay, Ananda S; Gast, Chris; Brickley, Elizabeth B; Rüttimann, Ricardo; Clemens, Ralf; Oberste, M Steven; Weldon, William C; Ackerman, Margaret E; Connor, Ruth I; Wieland-Alter, Wendy F; Wright, Peter; Usonis, Vytautas

Use of Precision-Cut Tissue Slices as a Translational Model to Study Host-Pathogen Interaction. (2021) Majorova, Dominika; Atkins, Elizabeth; Martineau, Henny; Vokral, Ivan; Oosterhuis, Dorenda; Olinga, Peter; Wren, Brendan; Cuccui, Jon; Werling, Dirk