Items where Research Centre is "Centre for Epidemic Preparedness and Response"

Research Centres (23573)

Centre for Epidemic Preparedness and Response (305) Month Authors/Creators Item Type Full Text

December 2020

Individual and community-level benefits of PrEP in western Kenya and South Africa: Implications for population prioritization of PrEP provision. (2020) Mudimu, Edinah; Peebles, Kathryn; Mukandavire, Zindoga; Nightingale, Emily; Sharma, Monisha; Medley, Graham F; Klein, Daniel J; Kripke, Katharine; Bershteyn, Anna

Parents' and guardians' views and experiences of accessing routine childhood vaccinations during the coronavirus (COVID-19) pandemic: A mixed methods study in England. (2020) Bell, Sadie; Clarke, Richard; Paterson, Pauline; Mounier-Jack, Sandra

Parents’ and guardians’ views and experiences of accessing routine childhood vaccinations during the coronavirus (COVID-19) pandemic: A mixed-methods study in England. (2020) Bell, Sadie; Clarke, Richard; Paterson, Pauline; Mounier-Jack, Sandra

Intestinal Antibody Responses to 2 Novel Live Attenuated Type 2 Oral Poliovirus Vaccines in Healthy Adults in Belgium. (2020) Brickley, Elizabeth B; Connor, Ruth I; Wieland-Alter, Wendy; Weiner, Joshua A; Ackerman, Margaret E; Arita, Minetaro; Gast, Chris; De Coster, Ilse; Van Damme, Pierre; Bandyopadhyay, Ananda S; Wright, Peter F picture_as_pdf

Association of tiered restrictions and a second lockdown with COVID-19 deaths and hospital admissions in England: a modelling study. (2020) Davies, Nicholas G; Barnard, Rosanna C; Jarvis, Christopher I; Russell, Timothy W; Semple, Malcolm G; Jit, Mark; Edmunds, W John; Centre for Mathematical Modelling of Infectious Diseases COVID-1; ISARIC4C investigators

Transmission of COVID-19 in 282 clusters in Catalonia, Spain: a cohort study. (2020) Marks, Michael; Millat-Martinez, Pere; Ouchi, Dan; Roberts, Chrissy H; Alemany, Andrea; Corbacho-Monné, Marc; Ubals, Maria; Tobias, Aurelio; Tebé, Cristian; Ballana, Ester; Vall-Mayans, Martí; G-Beiras, Camila; Prat, Nuria; Ara, Jordi; Clotet, Bonaventura; Mitjà, Oriol

Surgical findings in cryptorchidism in children with Zika-related microcephaly: a case series. (2020) de Vasconcelos, Rômulo AL; Ximenes, Ricardo AA; Calado, Adriano A; Martelli, Celina MT; Gonçalves, Andreia V; Brickley, Elizabeth B; de Araújo, Thalia VB; Rocha, Maria AW; Miranda-Filho, Demócrito de B

Endocrine Dysfunction in Children with Zika-Related Microcephaly Who Were Born during the 2015 Epidemic in the State of Pernambuco, Brazil. (2020) Veras Gonçalves, Andréia; Miranda-Filho, Demócrito de B; Rocha Vilela, Líbia Cristina; Ramos, Regina Coeli Ferreira; de Araújo, Thalia VB; de Vasconcelos, Rômulo AL; Wanderley Rocha, Maria Angela; Eickmann, Sophie Helena; Cordeiro, Marli Tenório; de Oliveira Ventura, Maria Liana Vieira; Montarroyos, Ulisses Ramos; Mertens Brainer, Alessandra; Costa Gomes, Maria Durce; da Silva, Paula Fabiana Sobral; Martelli, Celina MT; Brickley, Elizabeth B; Ximenes, Ricardo AA

Time use and social mixing during and around festive periods: Potential changes in the age distribution of COVID-19 cases from increased intergenerational interactions. (2020) van Leeuwen, Edwin; Sandmann, Frank G; Eggo, Rosalind M; White, Peter J

The Antimicrobial Peptide, Bactenecin 5, Supports Cell-Mediated but Not Humoral Immunity in the Context of a Mycobacterial Antigen Vaccine Model. (2020) Munshi, Tulika; Sparrow, Adam; Wren, Brendan W; Reljic, Rajko; Willcocks, Samuel J

Zika virus infection in pregnancy: a protocol for the joint analysis of the prospective cohort studies of the ZIKAlliance, ZikaPLAN and ZIKAction consortia. (2020) Ades, AE; Brickley, Elizabeth B; Alexander, Neal; Brown, David; Jaenisch, Thomas; Miranda-Filho, Demócrito de Barros; Pohl, Moritz; Rosenberger, Kerstin D; Soriano-Arandes, Antoni; Thorne, Claire; Ximenes, Ricardo Arraes de Alencar; de Araújo, Thalia Velho Barreto; Avelino-Silva, Vivian I; Bethencourt Castillo, Sarah Esperanza; Borja Aburto, Victor Hugo; Brasil, Patrícia; Christie, Celia DC; de Souza, Wayner Vieira; Gotuzzo H, Jose Eduardo; Hoen, Bruno; Koopmans, Marion; Martelli, Celina Maria Turchi; Martins Teixeira, Mauro; Marques, Ernesto TA; Miranda, Maria Consuelo; Montarroyos, Ulisses Ramos; Moreira, Maria Elisabeth; Morris, J Glenn; Rockx, Barry; Saba Villarroel, Paola Mariela; Soria Segarra, Carmen; Tami, Adriana; Turchi, Marília Dalva; Giaquinto, Carlo; de Lamballerie, Xavier; Wilder-Smith, Annelies; EC Zika Consortia Vertical Transmission Study Group

Early detection of cholera epidemics to support control in fragile states: estimation of delays and potential epidemic sizes. (2020) Ratnayake, Ruwan; Finger, Flavio; Edmunds, W John; Checchi, Francesco

CoMix: comparing mixing patterns in the Belgian population during and after lockdown. (2020) Coletti, Pietro; Wambua, James; Gimma, Amy; Willem, Lander; Vercruysse, Sarah; Vanhoutte, Bieke; Jarvis, Christopher I; Van Zandvoort, Kevin; Edmunds, John; Beutels, Philippe; Hens, Niel

Urgent actions and policies needed to address COVID-19 among UK ethnic minorities. (2020) Mathur, Rohini; Bear, Laura; Khunti, Kamlesh; Eggo, Rosalind M

CSF Levels of Elongation Factor Tu Is Associated With Increased Mortality in Malawian Adults With Streptococcus pneumoniae Meningitis. (2020) Wall, Emma C; Brownridge, Philip; Laing, Gavin; Terra, Vanessa S; Mlozowa, Veronica; Denis, Brigitte; Nyirenda, Mulinda; Allain, Theresa; Ramos-Sevillano, Elisa; Carrol, Enitan; Collins, Andrea; Gordon, Stephen B; Lalloo, David G; Wren, Brendan; Beynon, Robert; Heyderman, Robert S; Brown, Jeremy S

Estimating the time-varying reproduction number of SARS-CoV-2 using national and subnational case counts. (2020) Abbott, Sam; Hellewell, Joel; Thompson, Robin N; Sherratt, Katharine; Gibbs, Hamish P; Bosse, Nikos I; Munday, James D; Meakin, Sophie; Doughty, Emma L; Chun, June Young; Chan, Yung-Wai Desmond; Finger, Flavio; Campbell, Paul; Endo, Akira; Pearson, Carl AB; Gimma, Amy; Russell, Tim; Flasche, Stefan; Kucharski, Adam J; Eggo, Rosalind M; Funk, Sebastian

Estimating the time-varying reproduction number of SARS-CoV-2 using national and subnational case counts. (2020) Abbott, Sam; Hellewell, Joel; Thompson, Robin N; Sherratt, Katharine; Gibbs, Hamish P; Bosse, Nikos I; Munday, James D; Meakin, Sophie; Doughty, Emma L; Chun, June Young; Chan, Yung-Wai Desmond; Finger, Flavio; Campbell, Paul; Endo, Akira; Pearson, Carl AB; Gimma, Amy; Russell, Tim; Flasche, Stefan; Kucharski, Adam J; Eggo, Rosalind M; Funk, Sebastian

Short-term forecasts to inform the response to the Covid-19 epidemic in the UK. (2020) Funk, S; Abbott, S; Atkins, BD; Baguelin, M; Baillie, JK; Birrell, P; Blake, J; Bosse, NI; Burton, J; Carruthers, J; Davies, NG; De Angelis, D; Dyson, L; Edmunds, WJ; Eggo, RM; Ferguson, NM; Gaythorpe, K; Gorsich, E; Guyver-Fletcher, G; Hellewell, J; Hill, EM; Holmes, A; House, TA; Jewell, C; Jit, M; Jombart, T; Joshi, I; Keeling, MJ; Kendall, E; Knock, ES; Kucharski, AJ; Lythgoe, KA; Meakin, SR; Munday, JD; Openshaw, PJM; Overton, CE; Pagani, F; Pearson, J; Perez-Guzman, PN; Pellis, L; Scarabel, F; Semple, MG; Sherratt, K; Tang, M; Tildesley, MJ; Van Leeuwen, E; Whittles, LK

Vaccine strategies to reduce the burden of pneumococcal disease in HIV-infected adults in Africa. (2020) Thindwa, Deus; Pinsent, Amy; Ojal, John; Gallagher, Katherine E; French, Neil; Flasche, Stefan

Serovar-dependent differences in Hfq-regulated phenotypes in Actinobacillus pleuropneumoniae. (2020) Crispim, Josicelli Souza; da Silva, Thyara Ferreira; Sanches, Newton Moreno; da Silva, Giarlã Cunha; Pereira, Monalessa Fábia; Rossi, Ciro César; Li, Yanwen; Terra, Vanessa Sofia; Vohra, Prerna; Wren, Brendan W; Langford, Paul R; Bossé, Janine T; Bazzolli, Denise Mara Soares

Effect of repeated epilation for minor trachomatous trichiasis on lash burden, phenotype and surgical management willingness: A cohort study. (2020) Habtamu, Esmael; Wondie, Tariku; Gobezie, Wubshet; Tadesse, Zerihun; Gashaw, Bizuayehu; Gebeyehu, Abebaw; Roberts, Chrissy H; Callahan, E Kelly; Macleod, David; Burton, Matthew J

Conditional Cash Transfer Program and Leprosy Incidence: Analysis of 12.9 Million Families From the 100 Million Brazilian Cohort. (2020) Pescarini, Julia M; Williamson, Elizabeth; Ichihara, Maria Y; Fiaccone, Rosemeire L; Forastiere, Laura; Ramond, Anna; Nery, Joilda Silva; Penna, Maria Lucia F; Strina, Agostino; Reis, Sandra; Smeeth, Liam; Rodrigues, Laura C; Brickley, Elizabeth B; Penna, Gerson O; Barreto, Mauricio L

Impact of industrial production system parameters on chicken microbiomes: mechanisms to improve performance and reduce Campylobacter. (2020) McKenna, Aaron; Ijaz, Umer Zeeshan; Kelly, Carmel; Linton, Mark; Sloan, William T; Green, Brian D; Lavery, Ursula; Dorrell, Nick; Wren, Brendan W; Richmond, Anne; Corcionivoschi, Nicolae; Gundogdu, Ozan

November 2020

Genomic diversity of Escherichia coli isolates from backyard chickens and guinea fowl in the Gambia. (2020) Foster-Nyarko, Ebenezer; Alikhan, Nabil-Fareed; Ravi, Anuradha; Thomson, Nicholas M; Jarju, Sheikh; Kwambana-Adams, Brenda A; Secka, Arss; O'Grady, Justin; Antonio, Martin; Pallen, Mark John

A serological framework to investigate acute primary and post-primary dengue cases reporting across the Philippines. (2020) Biggs, Joseph R; Sy, Ava Kristy; Brady, Oliver J; Kucharski, Adam J; Funk, Sebastian; Reyes, Mary Anne Joy; Quinones, Mary Ann; Jones-Warner, William; Tu, Yun-Hung; Avelino, Ferchito L; Sucaldito, Nemia L; Mai, Huynh Kim; Lien, Le Thuy; Do Thai, Hung; Nguyen, Hien Anh Thi; Anh, Dang Duc; Iwasaki, Chihiro; Kitamura, Noriko; Yoshida, Lay-Myint; Tandoc, Amado O; la Paz, Eva Cutiongco-de; Capeding, Maria Rosario Z; Padilla, Carmencita D; Hafalla, Julius Clemence R; Hibberd, Martin L

Estimating the effectiveness of routine asymptomatic PCR testing at different frequencies for the detection of SARS-CoV-2 infections. (2020) Hellewell, Joel; Russell, Timothy W; Beale, Rupert; Kelly, Gavin; Houlihan, Catherine; Nastouli, Eleni; Kucharski, Adam J

Integrating economic and health evidence to inform Covid-19 policy in low- and middle- income countries. (2020) Vassall, Anna; Sweeney, Sedona; Barasa, Edwine; Prinja, Shankar; Keogh-Brown, Marcus R; Tarp Jensen, Henning; Smith, Richard; Baltussen, Rob; M Eggo, Rosalind; Jit, Mark

Characterization of Posttranslationally Modified Multidrug Efflux Pumps Reveals an Unexpected Link between Glycosylation and Antimicrobial Resistance. (2020) Abouelhadid, Sherif; Raynes, John; Bui, Tam; Cuccui, Jon; Wren, Brendan W

Time to Scale Up Preexposure Prophylaxis Beyond the Highest-Risk Populations? Modeling Insights From High-Risk Women in Sub-Saharan Africa. (2020) Grant, Hannah; Gomez, Gabriela B; Kripke, Katharine; Barnabas, Ruanne V; Watts, Charlotte; Medley, Graham F; Mukandavire, Zindoga description

Seroprevalence of anti-SARS-CoV-2 IgG antibodies in Kenyan blood donors. (2020) Uyoga, Sophie; Adetifa, Ifedayo MO; Karanja, Henry K; Nyagwange, James; Tuju, James; Wanjiku, Perpetual; Aman, Rashid; Mwangangi, Mercy; Amoth, Patrick; Kasera, Kadondi; Ng'ang'a, Wangari; Rombo, Charles; Yegon, Christine; Kithi, Khamisi; Odhiambo, Elizabeth; Rotich, Thomas; Orgut, Irene; Kihara, Sammy; Otiende, Mark; Bottomley, Christian; Mupe, Zonia N; Kagucia, Eunice W; Gallagher, Katherine E; Etyang, Anthony; Voller, Shirine; Gitonga, John N; Mugo, Daisy; Agoti, Charles N; Otieno, Edward; Ndwiga, Leonard; Lambe, Teresa; Wright, Daniel; Barasa, Edwine; Tsofa, Benjamin; Bejon, Philip; Ochola-Oyier, Lynette I; Agweyu, Ambrose; Scott, J Anthony G; Warimwe, George M

Implementation research in LMICs-evolution through innovation. (2020) Sheikh, Kabir; Hargreaves, James; Khan, Mishal; Mounier-Jack, Sandra

Co-production of an educational package for the universal human papillomavirus (HPV) vaccination programme tailored for schools with low uptake: a participatory study protocol. (2020) Fisher, Harriet; Audrey, Suzanne; Chantler, Tracey; Finn, Adam; Letley, Louise; Mounier-Jack, Sandra; Thomas, Clare; Yates, Julie; Hickman, Matthew

Does electronic consent improve the logistics and uptake of HPV vaccination in adolescent girls? A mixed-methods theory informed evaluation of a pilot intervention. (2020) Chantler, Tracey; Pringle, Ellen; Bell, Sadie; Cooper, Rosie; Edmundson, Emily; Nielsen, Heidi; Roberts, Sheila; Edelstein, Michael; Mounier-Jack, Sandra

Examining the Association of Socioeconomic Position with Microcephaly and Delayed Childhood Neurodevelopment among Children with Prenatal Zika Virus Exposure. (2020) Power, Grace M; Francis, Suzanna C; Sanchez Clemente, Nuria; Vasconcelos, Zilton; Brasil, Patricia; Nielsen-Saines, Karin; Brickley, Elizabeth B; Moreira, Maria E

Can Zika Virus Infection in High Risk Pregnant Women Be Differentiated on the Basis of Symptoms? (2020) Sanchez Clemente, Nuria; Brickley, Elizabeth B; Furquim de Almeida, Marcia; Witkin, Steven S; Duarte Passos, Saulo; Jundiai Zika Cohort Group, The

A Test-Negative Design with Additional Population Controls Can Be Used to Rapidly Study Causes of the SARS-CoV-2 Epidemic. (2020) Vandenbroucke, Jan P; Brickley, Elizabeth B; Vandenbroucke-Grauls, Christina MJE; Pearce, Neil

October 2020

Health service needs and perspectives of remote forest communities in Papua New Guinea: study protocol for combined clinical and rapid anthropological assessments with parallel treatment of urgent cases. (2020) Middleton, Jo; Abdad, Mohammad Yazid; Beauchamp, Emilie; Colthart, Gavin; Cooper, Maxwell JF; Dem, Francesca; Fairhead, James; Grundy, Caroline L; Head, Michael G; Inacio, Joao; Jimbudo, Mavis; Jones, Christopher Iain; Konecna, Martina; Laman, Moses; MacGregor, Hayley; Novotny, Vojtech; Peck, Mika; Paliau, Jason; Philip, Jonah; Pomat, Willie; Roberts, Chrissy H; Sui, Shen; Stewart, Alan J; Walker, Stephen L; Cassell, Jackie A

Field evaluation of the performance of a SARS-CoV-2 antigen rapid diagnostic test in Uganda using nasopharyngeal samples. (2020) Nalumansi, Aminah; Lutalo, Tom; Kayiwa, John; Watera, Christine; Balinandi, Stephen; Kiconco, Jocelyn; Nakaseegu, Joweria; Olara, Denis; Odwilo, Emmanuel; Serwanga, Jennifer; Kikaire, Bernard; Ssemwanga, Deogratius; Nabadda, Susan; Ssewanyana, Isaac; Atwine, Diane; Mwebesa, Henry; Bosa, Henry Kyobe; Nsereko, Christopher; Cotten, Matthew; Downing, Robert; Lutwama, Julius; Kaleebu, Pontiano

Detecting behavioural changes in human movement to inform the spatial scale of interventions against COVID-19. (2020) Gibbs, Hamish; Nightingale, Emily; Liu, Yang; Cheshire, James; Danon, Leon; Smeeth, Liam; Pearson, Carl AB; Grundy, Chris; Kucharski, Adam J; Eggo, Rosalind M

Towards a unified generic framework to define and observe contacts between livestock and wildlife: a systematic review. (2020) Bacigalupo, Sonny A; Dixon, Linda K; Gubbins, Simon; Kucharski, Adam J; Drewe, Julian A

Reconstructing the early global dynamics of under-ascertained COVID-19 cases and infections. (2020) Russell, Timothy W; Golding, Nick; Hellewell, Joel; Abbott, Sam; Wright, Lawrence; Pearson, Carl AB; van Zandvoort, Kevin; Jarvis, Christopher I; Gibbs, Hamish; Liu, Yang; Eggo, Rosalind M; Edmunds, W John; Kucharski, Adam J; CMMID COVID-19 working group

Factors associated with reporting antibiotic use as STI prophylaxis among HIV PrEP users: findings from a cross-sectional online community survey, May-July 2019, UK. (2020) O'Halloran, Charlotte; Croxford, Sara; Mohammed, Hamish; Gill, Owen Noel; Hughes, Gwenda; Fifer, Helen; Allen, Hester; Owen, Greg; Nutland, Will; Delpech, Valerie; Saunders, John Michael

Highly targeted spatiotemporal interventions against cholera epidemics, 2000-19: a scoping review. (2020) Ratnayake, Ruwan; Finger, Flavio; Azman, Andrew S; Lantagne, Daniele; Funk, Sebastian; Edmunds, W John; Checchi, Francesco

Parents' and guardians' views on the acceptability of a future COVID-19 vaccine: A multi-methods study in England. (2020) Bell, Sadie; Clarke, Richard; Mounier-Jack, Sandra; Walker, Jemma L; Paterson, Pauline

Study protocol: Comparison of different risk prediction modelling approaches for COVID-19 related death using the OpenSAFELY platform. (2020) Williamson, Elizabeth J; Tazare, John; Bhaskaran, Krishnan; Walker, Alex J; McDonald, Helen I; Tomlinson, Laurie; Bacon, Sebastian; Bates, Chris; Curtis, Helen J; Forbes, Harriet; Minassian, Caroline; Morton, Caroline E; Nightingale, Emily; Mehrkar, Amir; Evans, Dave; Nicholson, Brian D; Leon, David; Inglesby, Peter; MacKenna, Brian; Cockburn, Jonathan; Davies, Nicholas G; Hulme, William; Morley, Jessica; Douglas, Ian J; Rentsch, Christopher T; Mathur, Rohini; Wong, Angel; Schultze, Anna; Croker, Richard; Parry, John; Hester, Frank; Harper, Sam; Perera, Rafael; Grieve, Richard; Harrison, David; Steyerberg, Ewout; Eggo, Rosalind M; Diaz-Ordaz, Karla; Keogh, Ruth; Evans, Stephen JW; Smeeth, Liam; Goldacre, Ben

The impact of Covid-19, associated behaviours and policies on the UK economy: A computable general equilibrium model. (2020) Keogh-Brown, Marcus R; Jensen, Henning Tarp; Edmunds, W John; Smith, Richard D

Response strategies for COVID-19 epidemics in African settings: a mathematical modelling study. (2020) van Zandvoort, Kevin; Jarvis, Christopher I; Pearson, Carl AB; Davies, Nicholas G; CMMID COVID-19 working group; Ratnayake, Ruwan; Russell, Timothy W; Kucharski, Adam J; Jit, Mark; Flasche, Stefan; Eggo, Rosalind M; Checchi, Francesco

An Empirical Analysis of Synergies and Tradeoffs between Sustainable Development Goals. (2020) Ament, Judith M; Freeman, Robin; Carbone, Chris; Vassall, Anna; Watts, Charlotte

Does being on HIV antiretroviral therapy increase the risk of syphilis? An analysis of a large national cohort of MSM living with HIV in England 2009-2016. (2020) Allen, Hester; Kirwan, Peter; Brown, Alison E; Mohammed, Hamish; Hughes, Gwenda; Marks, Michael; Delpech, Valerie description

Pediatric neurodevelopment by prenatal Zika virus exposure: a cross-sectional study of the Microcephaly Epidemic Research Group Cohort. (2020) Sobral da Silva, Paula Fabiana; Eickmann, Sophie Helena; Arraes de Alencar Ximenes, Ricardo; Ramos Montarroyos, Ulisses; de Carvalho Lima, Marilia; Turchi Martelli, Celina M; Velho Barreto de Araújo, Thalia; Brickley, Elizabeth B; Cunha Rodrigues, Laura; Lima da Silva Pastich Gonçalves, Fabiana Cristina; Costa Gomes Carvalho, Maria Durce; Vieira de Souza, Wayner; de Barros Miranda-Filho, Demócrito

Estimating Cost Functions for Resource Allocation Using Transmission Models: A Case Study of Tuberculosis Case Finding in South Africa. (2020) Gomez, Gabriela B; Mudzengi, Don L; Bozzani, Fiammetta; Menzies, Nicholas A; Vassall, Anna

Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism. (2020) Chaguza, Chrispin; Yang, Marie; Cornick, Jennifer E; du Plessis, Mignon; Gladstone, Rebecca A; Kwambana-Adams, Brenda A; Lo, Stephanie W; Ebruke, Chinelo; Tonkin-Hill, Gerry; Peno, Chikondi; Senghore, Madikay; Obaro, Stephen K; Ousmane, Sani; Pluschke, Gerd; Collard, Jean-Marc; Sigaùque, Betuel; French, Neil; Klugman, Keith P; Heyderman, Robert S; McGee, Lesley; Antonio, Martin; Breiman, Robert F; von Gottberg, Anne; Everett, Dean B; Kadioglu, Aras; Bentley, Stephen D

Changing travel patterns in China during the early stages of the COVID-19 pandemic. (2020) Gibbs, Hamish; Liu, Yang; Pearson, Carl AB; Jarvis, Christopher I; Grundy, Chris; Quilty, Billy J; Diamond, Charlie; LSHTM CMMID COVID-19 working group; Eggo, Rosalind M

The impact of COVID-19 control measures on social contacts and transmission in Kenyan informal settlements. (2020) Quaife, Matthew; van Zandvoort, Kevin; Gimma, Amy; Shah, Kashvi; McCreesh, Nicky; Prem, Kiesha; Barasa, Edwine; Mwanga, Daniel; Kangwana, Beth; Pinchoff, Jessie; CMMID COVID-19 Working Group; Edmunds, W John; Jarvis, Christopher I; Austrian, Karen

The impact of COVID-19 control measures on social contacts and transmission in Kenyan informal settlements. (2020) Quaife, Matthew; van Zandvoort, Kevin; Gimma, Amy; Shah, Kashvi; McCreesh, Nicky; Prem, Kiesha; Barasa, Edwine; Mwanga, Daniel; Kangwana, Beth; Pinchoff, Jessie; Edmunds, W John; Jarvis, Christopher I; Austrian, Karen

Main Routes of Entry and Genomic Diversity of SARS-CoV-2, Uganda. (2020) Bugembe, Daniel Lule; Kayiwa, John; Phan, My VT; Tushabe, Phiona; Balinandi, Stephen; Dhaala, Beatrice; Lexow, Jonas; Mwebesa, Henry; Aceng, Jane; Kyobe, Henry; Ssemwanga, Deogratius; Lutwama, Julius; Kaleebu, Pontiano; Cotten, Matthew

The COVID-19 response illustrates that traditional academic reward structures and metrics do not reflect crucial contributions to modern science. (2020) Kucharski, Adam J; Funk, Sebastian; Eggo, Rosalind M

Effectiveness of isolation, testing, contact tracing, and physical distancing on reducing transmission of SARS-CoV-2 in different settings: a mathematical modelling study. (2020) Kucharski, Adam J; Klepac, Petra; Conlan, Andrew JK; Kissler, Stephen M; Tang, Maria L; Fry, Hannah; Gog, Julia R; Edmunds, W John; CMMID COVID-19 working group

Postnatal symptomatic Zika virus infections in children and adolescents: A systematic review. (2020) Ramond, Anna; Lobkowicz, Ludmila; Clemente, Nuria Sanchez; Vaughan, Aisling; Turchi, Marília Dalva; Wilder-Smith, Annelies; Brickley, Elizabeth B picture_as_pdf

September 2020

Behavioral Change Towards Reduced Intensity Physical Activity Is Disproportionately Prevalent Among Adults With Serious Health Issues or Self-Perception of High Risk During the UK COVID-19 Lockdown. (2020) Rogers, Nina Trivedy; Waterlow, Naomi R; Brindle, Hannah; Enria, Luisa; Eggo, Rosalind M; Lees, Shelley; Roberts, Chrissy H

Behavioural change towards reduced intensity physical activity is disproportionately prevalent among adults with serious health issues or self-perception of high risk during the UK COVID-19 lockdown. (2020) Rogers, Nina Trivedy; Waterlow, Naomi; Brindle, Hannah; Enria, Luisa; Eggo, Rosalind M; Lees, Shelley; Roberts, Chrissy H

Estimation of Rift Valley fever virus spillover to humans during the Mayotte 2018-2019 epidemic. (2020) Métras, Raphaëlle; Edmunds, W John; Youssouffi, Chouanibou; Dommergues, Laure; Fournié, Guillaume; Camacho, Anton; Funk, Sebastian; Cardinale, Eric; Le Godais, Gilles; Combo, Soihibou; Filleul, Laurent; Youssouf, Hassani; Subiros, Marion

The potential health and economic value of SARS-CoV-2 vaccination alongside physical distancing in the UK: a transmission model-based future scenario analysis and economic evaluation. (2020) Sandmann, Frank G; Davies, Nicholas G; Vassall, Anna; Edmunds, W John; Jit, Mark; Centre for the Mathematical Modelling of Infectious Diseases COV picture_as_pdf

Susceptibility to SARS-CoV-2 Infection Among Children and Adolescents Compared With Adults: A Systematic Review and Meta-analysis. (2020) Viner, Russell M; Mytton, Oliver T; Bonell, Chris; Melendez-Torres, GJ; Ward, Joseph; Hudson, Lee; Waddington, Claire; Thomas, James; Russell, Simon; van der Klis, Fiona; Koirala, Archana; Ladhani, Shamez; Panovska-Griffiths, Jasmina; Davies, Nicholas G; Booy, Robert; Eggo, Rosalind M

Inferring transmission trees to guide targeting of interventions against visceral leishmaniasis and post-kala-azar dermal leishmaniasis. (2020) Chapman, Lloyd AC; Spencer, Simon EF; Pollington, Timothy M; Jewell, Chris P; Mondal, Dinesh; Alvar, Jorge; Hollingsworth, T Déirdre; Cameron, Mary M; Bern, Caryn; Medley, Graham F

Informing Balanced Investment in Services and Health Systems: A Case Study of Priority Setting for Tuberculosis Interventions in South Africa. (2020) Bozzani, Fiammetta M; Sumner, Tom; Mudzengi, Don; Gomez, Gabriela B; White, Richard; Vassall, Anna

Poor self-reported adherence to COVID-19-related quarantine/isolation requests, Norway, April to July 2020. (2020) Steens, Anneke; Freiesleben de Blasio, Birgitte; Veneti, Lamprini; Gimma, Amy; Edmunds, W John; Van Zandvoort, Kevin; Jarvis, Christopher I; Forland, Frode; Robberstad, Bjarne

Entamoeba and Giardia parasites implicated as hosts of CRESS viruses. (2020) Kinsella, Cormac M; Bart, Aldert; Deijs, Martin; Broekhuizen, Patricia; Kaczorowska, Joanna; Jebbink, Maarten F; van Gool, Tom; Cotten, Matthew; van der Hoek, Lia

Genomic diversity of Escherichia coli isolates from non-human primates in the Gambia. (2020) Foster-Nyarko, Ebenezer; Alikhan, Nabil-Fareed; Ravi, Anuradha; Thilliez, Gaëtan; Thomson, Nicholas M; Baker, David; Kay, Gemma; Cramer, Jennifer D; O'Grady, Justin; Antonio, Martin; Pallen, Mark J

The effectiveness of social bubbles as part of a Covid-19 lockdown exit strategy, a modelling study. (2020) Leng, Trystan; White, Connor; Hilton, Joe; Kucharski, Adam; Pellis, Lorenzo; Stage, Helena; Davies, Nicholas G; Centre for Mathematical Modelling of Infectious Disease 2019 nCo; Keeling, Matt J; Flasche, Stefan

Impact of industrial production system parameters on chicken microbiomes: mechanisms to improve performance and reduce <i>Campylobacter</i>. (2020) McKenna, Aaron; Ijaz, Umer Zeeshan; Kelly, Carmel; Linton, Mark; Sloan, William; Green, Brian; Lavery, Ursula; Dorrell, Nick; Wren, Brendan; Richmond, Anne; Corcionivoschi, Nicolae; Gundogdu, Ozan

Bias correction methods for test-negative designs in the presence of misclassification. (2020) Endo, A; Funk, S; Kucharski, AJ

Comparison of Oropharyngeal Dysphagia in Brazilian Children with Prenatal Exposure to Zika Virus, With and Without Microcephaly. (2020) Oliveira, Danielle Maria da Silva; Miranda-Filho, Demócrito de Barros; Ximenes, Ricardo Arraes de Alencar; Montarroyos, Ulisses Ramos; Martelli, Celina Maria Turchi; Brickley, Elizabeth B; Gouveia, Mariana de Carvalho Leal; Ramos, Regina Coeli; Rocha, Maria Ângela Wanderley; Araujo, Thalia Velho Barreto de; Eickmann, Sophie Helena; Rodrigues, Laura Cunha; Bernardes, Jeyse Polliane de Oliveira Soares; Pinto, Maria Helena Teixeira; Soares, Karina Polo Norte Danda; Araújo, Claudia Marina Tavares de; Militão-Albuquerque, Maria de Fátima Pessoa; Santos, Ana Célia Oliveira Dos

Trust and Transparency in times of Crisis: Results from an Online Survey During the First Wave (April 2020) of the COVID-19 Epidemic in the UK. (2020) Enria, Luisa; Waterlow, Naomi; Rogers, Nina T; Brindle, Hannah; Lal, Sham; Eggo, Rosalind M; Lees, Shelley; Roberts, Chrissy H

Clostridioides difficile para-Cresol Production Is Induced by the Precursor para-Hydroxyphenylacetate. (2020) Harrison, Mark A; Faulds-Pain, Alexandra; Kaur, Harparkash; Dupuy, Bruno; Henriques, Adriano O; Martin-Verstraete, Isabelle; Wren, Brendan W; Dawson, Lisa F

The cost-effectiveness of using performance-based financing to deliver the basic package of health services in Afghanistan. (2020) Salehi, Ahmad S; Borghi, Josephine; Blanchet, Karl; Vassall, Anna

Constructing Mutants in Serotype 1 Streptococcus pneumoniae strain 519/43. (2020) Terra, Vanessa S; Plumptre, Charles D; Wall, Emma C; Brown, Jeremy S; Wren, Brendan W picture_as_pdf

Evaluation of Glycosylated FlpA and SodB as Subunit Vaccines Against Campylobacter jejuni Colonisation in Chickens. (2020) Vohra, Prerna; Chintoan-Uta, Cosmin; Terra, Vanessa S; Bremner, Abi; Cuccui, Jon; Wren, Brendan W; Vervelde, Lonneke; Stevens, Mark P

Correction: Geographic and socioeconomic factors associated with leprosy treatment default: An analysis from the 100 Million Brazilian Cohort. (2020) de Andrade, Kaio Vinicius Freitas; Nery, Joilda Silva; Pescarini, Julia Moreira; Ramond, Anna; Carlos Antônio de Souza Teles Santos; Ichihara, Maria Yury; Fernandes Penna, Maria Lucia; Brickley, Elizabeth B; Rodrigues, Laura C; Smeeth, Liam; Barreto, Mauricio L; Pereira, Susan Martins; Penna, Gerson Oliveira

August 2020

Clostridioides difficile para-Cresol Production Is Induced by the Precursor para-Hydroxyphenylacetate. (2020) Harrison, Mark A; Faulds-Pain, Alexandra; Kaur, Harparkash; Dupuy, Bruno; Henriques, Adriano O; Martin-Verstraete, Isabelle; Wren, Brendan W; Dawson, Lisa F

The health sector cost of different policy responses to COVID-19 in low- and middle- income countries. (2020) Torres Rueda, Sergio; Sweeney, Sedona; Bozzani, Fiammetta; Vassall, Anna

The contribution of asymptomatic SARS-CoV-2 infections to transmission on the Diamond Princess cruise ship. (2020) Emery, Jon C; Russell, Timothy W; Liu, Yang; Hellewell, Joel; Pearson, Carl Ab; CMMID COVID-19 Working Group; Knight, Gwenan M; Eggo, Rosalind M; Kucharski, Adam J; Funk, Sebastian; Flasche, Stefan; Houben, Rein Mgj

An imperfect tool: contact tracing could provide valuable reductions in COVID-19 transmission if good adherence can be achieved and maintained. (2020) Davis, Emma L; Lucas, Tim CD; Borlase, Anna; Pollington, Timothy M; Abbott, Sam; Ayabina, Diepreye; Crellen, Thomas; Hellewell, Joel; Pi, Li; Medley, Graham F; Hollingsworth, T Déirdre; Klepac, Petra

Seasonal influenza vaccination in Kenya: an economic evaluation using dynamic transmission modelling. (2020) Dawa, Jeanette; Emukule, Gideon O; Barasa, Edwine; Widdowson, Marc Alain; Anzala, Omu; van Leeuwen, Edwin; Baguelin, Marc; Chaves, Sandra S; Eggo, Rosalind M

The effect of travel restrictions on the geographical spread of COVID-19 between large cities in China: a modelling study. (2020) Quilty, Billy J; Diamond, Charlie; Liu, Yang; Gibbs, Hamish; Russell, Timothy W; Jarvis, Christopher I; Prem, Kiesha; Pearson, Carl AB; Clifford, Samuel; Flasche, Stefan; CMMID COVID-19 working group; Klepac, Petra; Eggo, Rosalind M; Jit, Mark

Setting a baseline for global urban virome surveillance in sewage. (2020) Nieuwenhuijse, David F; Oude Munnink, Bas B; Phan, My VT; Global Sewage Surveillance project consortium; Munk, Patrick; Venkatakrishnan, Shweta; Aarestrup, Frank M; Cotten, Matthew; Koopmans, Marion PG

An e-registry for household contacts exposed to multidrug resistant TB in Mongolia. (2020) Naker, Kush; Gaskell, Katherine M; Dorjravdan, Munhjargal; Dambaa, Naranzul; Roberts, Chrissy H; Moore, David AJ

Key questions for modelling COVID-19 exit strategies. (2020) Thompson, Robin N; Hollingsworth, T Déirdre; Isham, Valerie; Arribas-Bel, Daniel; Ashby, Ben; Britton, Tom; Challenor, Peter; Chappell, Lauren HK; Clapham, Hannah; Cunniffe, Nik J; Dawid, A Philip; Donnelly, Christl A; Eggo, Rosalind M; Funk, Sebastian; Gilbert, Nigel; Glendinning, Paul; Gog, Julia R; Hart, William S; Heesterbeek, Hans; House, Thomas; Keeling, Matt; Kiss, István Z; Kretzschmar, Mirjam E; Lloyd, Alun L; McBryde, Emma S; McCaw, James M; McKinley, Trevelyan J; Miller, Joel C; Morris, Martina; O'Neill, Philip D; Parag, Kris V; Pearson, Carl AB; Pellis, Lorenzo; Pulliam, Juliet RC; Ross, Joshua V; Tomba, Gianpaolo Scalia; Silverman, Bernard W; Struchiner, Claudio J; Tildesley, Michael J; Trapman, Pieter; Webb, Cerian R; Mollison, Denis; Restif, Olivier

Conjunctival Scarring, Corneal Pannus, and Herbert's Pits in Adolescent Children in Trachoma-endemic Populations of the Solomon Islands and Vanuatu. (2020) Butcher, Robert; Tagabasoe, Junely; Manemaka, Joseph; Bong, Annie; Garae, Mackline; Daniel, Lui; Roberts, Chrissy; Handley, Becca L; Hu, Victor H; Harding-Esch, Emma M; Bakhtiari, Ana; Willis, Rebecca; Müller, Andreas; Kaldor, John; Le Mesurier, Richard; Mabey, David; Cama, Anasaini; Sokana, Oliver; Taleo, Fasihah; Taylor, Hugh R; Solomon, Anthony W description

Investigating the decline in Lymphogranuloma venereum diagnoses in men who have sex with men in the United Kingdom since 2016: an analysis of surveillance data. (2020) Allen, Hester; Pitt, Rachel; Bardsley, Megan; Smolarchuk, Christa; Sullivan, Ann; Mohammed, Hamish; Cole, Michelle; Fifer, Helen; Wallace, Lesley; Thomas, Daniel; Irvine, Neil; Templeton, Kate; Hughes, Gwenda; Simms, Ian

Using a real-world network to model localized COVID-19 control strategies. (2020) Firth, Josh A; Hellewell, Joel; Klepac, Petra; Kissler, Stephen; CMMID COVID-19 Working Group; Kucharski, Adam J; Spurgin, Lewis G

A comprehensive framework for considering additional unintended consequences in economic evaluation. (2020) Nymark, Liv; Vassall, Anna

Correction to: A Systematic Review of Methodological Variation in Healthcare Provider Perspective Tuberculosis Costing Papers Conducted in Low- and Middle-Income Settings, Using An Intervention-Standardised Unit Cost Typology. (2020) Cunnama, Lucy; Gomez, Gabriela B; Siapka, Mariana; Herzel, Ben; Hill, Jeremy; Kairu, Angela; Levin, Carol; Okello, Dickson; DeCormier Plosky, Willyanne; Garcia Baena, Inés; Sweeney, Sedona; Vassall, Anna; Sinanovic, Edina

Cost of tuberculosis treatment in low- and middle-income countries: systematic review and meta-regression. (2020) Siapka, M; Vassall, A; Cunnama, L; Pineda, C; Cerecero, D; Sweeney, S; Bautista-Arredondo, S; Bollinger, L; Cameron, D; Levin, C; Gomez, GB

July 2020

COVID-19 control in low-income settings and displaced populations: what can realistically be done? (2020) Dahab, Maysoon; van Zandvoort, Kevin; Flasche, Stefan; Warsame, Abdihamid; Ratnayake, Ruwan; Favas, Caroline; Spiegel, Paul B; Waldman, Ronald J; Checchi, Francesco

Estimation of Seasonal Influenza Attack Rates and Antibody Dynamics in Children Using Cross-Sectional Serological Data. (2020) Minter, Amanda; Hoschler, Katja; Jagne, Ya Jankey; Sallah, Hadijatou; Armitage, Edwin; Lindsey, Benjamin; Hay, James A; Riley, Steven; de Silva, Thushan I; Kucharski, Adam J

Zika virus infection in pregnancy and adverse fetal outcomes in São Paulo State, Brazil: a prospective cohort study. (2020) Sanchez Clemente, Nuria; Brickley, Elizabeth B; Paixão, Enny S; De Almeida, Marcia F; Gazeta, Rosa E; Vedovello, Danila; Rodrigues, Laura C; Witkin, Steven S; Passos, Saulo D

The Etiology of Pneumonia From Analysis of Lung Aspirate and Pleural Fluid Samples: Findings From the Pneumonia Etiology Research for Child Health (PERCH) Study. (2020) Ebruke, Bernard E; Deloria Knoll, Maria; Haddix, Meredith; Zaman, Syed MA; Prosperi, Christine; Feikin, Daniel R; Hammitt, Laura L; Levine, Orin S; O'Brien, Katherine L; Murdoch, David R; Brooks, W Abdullah; Scott, J Anthony G; Kotloff, Karen L; Madhi, Shabir A; Thea, Donald M; Baillie, Vicky L; Chisti, Mohammod Jobayer; Dione, Michel; Driscoll, Amanda J; Fancourt, Nicholas; Karron, Ruth A; Le, Tham T; Mohamed, Shebe; Moore, David P; Morpeth, Susan C; Mwaba, John; Mwansa, James; Bin Shahid, Abu Sadat Mohammad Sayeem; Sow, Samba O; Tapia, Milagritos D; Antonio, Martin; Howie, Stephen RC description

Zika virus vertical transmission in children with confirmed antenatal exposure. (2020) Brasil, Patrícia; Vasconcelos, Zilton; Kerin, Tara; Gabaglia, Claudia Raja; Ribeiro, Ieda P; Bonaldo, Myrna C; Damasceno, Luana; Pone, Marcos V; Pone, Sheila; Zin, Andrea; Tsui, Irena; Adachi, Kristina; Pereira, Jose Paulo; Gaw, Stephanie L; Carvalho, Liege; Cunha, Denise C; Guida, Leticia; Rocha, Mirza; Cherry, James D; Wang, Lulan; Aliyari, Saba; Cheng, Genhong; Foo, Suan-Sin; Chen, Weiqiang; Jung, Jae; Brickley, Elizabeth; Moreira, Maria Elisabeth L; Nielsen-Saines, Karin

Human monkeypox - After 40 years, an unintended consequence of smallpox eradication. (2020) Simpson, Karl; Heymann, David; Brown, Colin S; Edmunds, W John; Elsgaard, Jesper; Fine, Paul; Hochrein, Hubertus; Hoff, Nicole A; Green, Andrew; Ihekweazu, Chikwe; Jones, Terry C; Lule, Swaib; Maclennan, Jane; McCollum, Andrea; Mühlemann, Barbara; Nightingale, Emily; Ogoina, Dimie; Ogunleye, Adesola; Petersen, Brett; Powell, Jacqueline; Quantick, Ollie; Rimoin, Anne W; Ulaeato, David; Wapling, Andy

Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation. (2020) Chaguza, Chrispin; Senghore, Madikay; Bojang, Ebrima; Gladstone, Rebecca A; Lo, Stephanie W; Tientcheu, Peggy-Estelle; Bancroft, Rowan E; Worwui, Archibald; Foster-Nyarko, Ebenezer; Ceesay, Fatima; Okoi, Catherine; McGee, Lesley; Klugman, Keith P; Breiman, Robert F; Barer, Michael R; Adegbola, Richard A; Antonio, Martin; Bentley, Stephen D; Kwambana-Adams, Brenda A

Estimating the overdispersion in COVID-19 transmission using outbreak sizes outside China. (2020) Endo, Akira; Centre for the Mathematical Modelling of Infectious Diseases COV; Abbott, Sam; Kucharski, Adam J; Funk, Sebastian

Reconstructing the early global dynamics of under-ascertained COVID-19 cases and infections. (2020) Russell, Timothy W; Golding, Nick; Hellewell, Joel; Abbott, Sam; Wright, Lawrence; Pearson, Carl AB; Zandvoort, Kevin van; Jarvis, Christopher I; Gibbs, Hamish; Liu, Yang; Eggo, Rosalind M; Edmunds, W John; Kucharski, Adam J

Estimating the infection and case fatality ratio for COVID-19 using age-adjusted data from the outbreak on the Diamond Princess cruise ship. (2020) Russell, Timothy W; Hellewell, Joel; Jarvis, Christopher I; Van Zandvoort, Kevin; Abbott, Sam; Ratnayake, Ruwan; Flasche, Stefan; Eggo, Rosalind M; Edmunds, W John; Kucharski, Adam J

Improving protein glycan coupling technology (PGCT) for glycoconjugate vaccine production. (2020) Dow, Jennifer Mhairi; Mauri, Marta; Scott, Timothy Alexander; Wren, Brendan William picture_as_pdf

A spatio-temporal approach to short-term prediction of visceral leishmaniasis diagnoses in India. (2020) Nightingale, Emily S; Chapman, Lloyd AC; Srikantiah, Sridhar; Subramanian, Swaminathan; Jambulingam, Purushothaman; Bracher, Johannes; Cameron, Mary M; Medley, Graham F

Revisiting aminocoumarins for the treatment of melioidosis. (2020) Willcocks, SJ; Cia, F; Francisco, AF; Wren, BW

Probabilistic reconstruction of measles transmission clusters from routinely collected surveillance data. (2020) Robert, Alexis; Kucharski, Adam J; Gastañaduy, Paul A; Paul, Prabasaj; Funk, Sebastian

June 2020

Comparisons between countries are essential for the control of COVID-19. (2020) Pearce, Neil; Lawlor, Deborah A; Brickley, Elizabeth B

Increased resolution of African swine fever virus genome patterns based on profile HMMs of protein domains. (2020) Masembe, Charles; Phan, My VT; Robertson, David L; Cotten, Matthew

What will it cost to prevent violence against women and girls in low- and middle-income countries? Evidence from Ghana, Kenya, Pakistan, Rwanda, South Africa and Zambia. (2020) Torres-Rueda, Sergio; Ferrari, Giulia; Orangi, Stacey; Hitimana, Regis; Daviaud, Emmanuelle; Tawiah, Theresa; Prah, Rebecca Kyerewaa Dwommoh; Karmaliani, Rozina; Kapapa, Eleonah; Barasa, Edwine; Jewkes, Rachel; Vassall, Anna

Global, regional, and national estimates of the population at increased risk of severe COVID-19 due to underlying health conditions in 2020: a modelling study. (2020) Clark, Andrew; Jit, Mark; Warren-Gash, Charlotte; Guthrie, Bruce; Wang, Harry HX; Mercer, Stewart W; Sanderson, Colin; McKee, Martin; Troeger, Christopher; Ong, Kanyin L; Checchi, Francesco; Perel, Pablo; Joseph, Sarah; Gibbs, Hamish P; Banerjee, Amitava; Eggo, Rosalind M; Centre for the Mathematical Modelling of Infectious Diseases COV

Effects of non-pharmaceutical interventions on COVID-19 cases, deaths, and demand for hospital services in the UK: a modelling study. (2020) Davies, Nicholas G; Kucharski, Adam J; Eggo, Rosalind M; Gimma, Amy; Edmunds, W John; Centre for the Mathematical Modelling of Infectious Diseases COV

Investing in the health of girls and women: a best buy for sustainable development. (2020) Remme, Michelle; Vassall, Anna; Fernando, Gabriela; Bloom, David E

On the fallibility of simulation models in informing pandemic responses - Authors' reply. (2020) Hellewell, Joel; Funk, Sebastian; Eggo, Rosalind M

Incidence of and Factors Associated With Leprosy Among Household Contacts of Patients With Leprosy in Brazil. (2020) Teixeira, Camila Silveira Silva; Pescarini, Júlia Moreira; Alves, Flávia Jôse Oliveira; Nery, Joilda Silva; Sanchez, Mauro Niskier; Teles, Carlos; Ichihara, Maria Yury Travassos; Ramond, Anna; Smeeth, Liam; Fernandes Penna, Maria Lucia; Rodrigues, Laura Cunha; Brickley, Elizabeth B; Penna, Gerson Oliveira; Barreto, Maurício Lima; Silva, Rita de Cássia Ribeiro

Feasibility of controlling COVID-19 - Authors' reply. (2020) Eggo, Rosalind M; Hellewell, Joel; Funk, Sebastian

When, Who, and How to Sample: Designing Practical Surveillance for 7 Neglected Tropical Diseases as We Approach Elimination. (2020) Toor, Jaspreet; Coffeng, Luc E; Hamley, Jonathan ID; Fronterre, Claudio; Prada, Joaquin M; Castaño, M Soledad; Davis, Emma L; Godwin, William; Vasconcelos, Andreia; Medley, Graham F; Hollingsworth, T Déirdre

Impact of routine vaccination against Haemophilus influenzae type b in The Gambia: 20 years after its introduction. (2020) Zaman, Syed Ma; Howie, Stephen Rc; Ochoge, Magnus; Secka, Ousman; Bah, Alasana; Baldeh, Ignatius; Sanneh, Bakary; Darboe, Saffiatou; Ceesay, Buntung; Camara, Haddy Bah; Mawas, Fatme; Ndiaye, Malick; Hossain, Ilias; Salaudeen, Rasheed; Bojang, Kalifa; Ceesay, Samba; Sowe, Dawda; Hossain, M Jahangir; Mulholland, Kim; Kwambana-Adams, Brenda A; Okoi, Catherine; Badjie, Siaka; Ceesay, Lamin; Mwenda, Jason M; Cohen, Adam L; Agocs, Mary; Mihigo, Richard; Bottomley, Christian; Antonio, Martin; Mackenzie, Grant A

May 2020

Is flu vaccination opt-out feasible? Evidence from vaccination programme implementers and managers in the English National Health Service. (2020) Bell, Sadie; Chantler, Tracey; Paterson, Pauline; Mounier-Jack, Sandra

Evaluation of the recombinant proteins RlpB and VacJ as a vaccine for protection against Glaesserella parasuis in pigs. (2020) Hau, Samantha J; Luan, Shi-Lu; Loving, Crystal L; Nicholson, Tracy L; Wang, Jinhong; Peters, Sarah E; Seilly, David; Weinert, Lucy A; Langford, Paul R; Rycroft, Andrew N; Wren, Brendan W; Maskell, Duncan J; Tucker, Alexander W; Brockmeier, Susan L; BRaDP1T Consortium

Etiology of Pediatric Meningitis in West Africa Using Molecular Methods in the Era of Conjugate Vaccines against Pneumococcus, Meningococcus, and Haemophilus influenzae Type b. (2020) Kwambana-Adams, Brenda A; Liu, Jie; Okoi, Catherine; Mwenda, Jason M; Mohammed, Nuredin I; Tsolenyanu, Enyonam; Renner, Lorna Awo; Ansong, Daniel; Tagbo, Beckie N; Bashir, Muhammad F; Hama, Mamadou Kourna; Sonko, Mouhamadou A; Gratz, Jean; Worwui, Archibald; Ndow, Peter; Cohen, Adam L; Serhan, Fatima; Mihigo, Richard; Antonio, Martin; Houpt, Eric; Paediatric Bacterial Meningitis Surveillance Network in West Afr

Tuberculosis infection prevention and control: why we need a whole systems approach. (2020) Kielmann, Karina; Karat, Aaron S; Zwama, Gimenne; Colvin, Christopher; Swartz, Alison; Voce, Anna S; Yates, Tom A; MacGregor, Hayley; McCreesh, Nicky; Kallon, Idriss; Vassall, Anna; Govender, Indira; Seeley, Janet; Grant, Alison D

Spatiotemporal and Socioeconomic Risk Factors for Dengue at the Province Level in Vietnam, 2013-2015: Clustering Analysis and Regression Model. (2020) Ashmore, Polly; Lindahl, Johanna F; Colón-González, Felipe J; Sinh Nam, Vu; Quang Tan, Dang; Medley, Graham F

The impact of Coronavirus disease 2019 (COVID-19) on health systems and household resources in Africa and South Asia. (2020) Davies, Nicholas; Sweeney, Sedona; Torres-Rueda, Sergio; Bozzani, Fiammetta; Kitson, Nichola; Barasa, Edwine; Procter, Simon R; Quaife, Matthew; Eggo, Rosalind M; Vassall, Anna; Jit, Mark

An open source tool to infer epidemiological and immunological dynamics from serological data: serosolver. (2020) Hay, James A; Minter, Amanda; Ainslie, Kylie EC; Lessler, Justin; Yang, Bingyi; Cummings, Derek AT; Kucharski, Adam J; Riley, Steven

Effect of a conditional cash transfer programme on leprosy treatment adherence and cure in patients from the nationwide 100 Million Brazilian Cohort: a quasi-experimental study. (2020) Pescarini, Julia M; Williamson, Elizabeth; Nery, Joilda S; Ramond, Anna; Ichihara, Maria Yury; Fiaccone, Rosemeire L; Penna, Maria Lucia F; Smeeth, Liam; Rodrigues, Laura C; Penna, Gerson O; Brickley, Elizabeth B; Barreto, Mauricio L

Cryptorchidism in Children with Zika-Related Microcephaly. (2020) de Vasconcelos, Rômulo AL; Ximenes, Ricardo AA; Calado, Adriano A; Martelli, Celina MT; Gonçalves, Andreia V; Brickley, Elizabeth B; de Araújo, Thalia VB; Wanderley Rocha, Maria Angela; Miranda-Filho, Demócrito de B

The frequency and clinical presentation of Zika virus coinfections: a systematic review. (2020) Lobkowicz, Ludmila; Ramond, Anna; Sanchez Clemente, Nuria; Ximenes, Ricardo Arraes de Alencar; Miranda-Filho, Demócrito de Barros; Montarroyos, Ulisses Ramos; Martelli, Celina Maria Turchi; de Araújo, Thalia Velho Barreto; Brickley, Elizabeth B

April 2020

Responding to measles outbreaks in underserved Roma and Romanian populations in England: the critical role of community understanding and engagement. (2020) Bell, Sadie; Saliba, Vanessa; Evans, Gail; Flanagan, Stephen; Ghebrehewet, Sam; McAuslane, Helen; Sibal, Bharat; Mounier-Jack, Sandra

Inferring the number of COVID-19 cases from recently reported deaths. (2020) Jombart, Thibaut; van Zandvoort, Kevin; Russell, Timothy W; Jarvis, Christopher I; Gimma, Amy; Abbott, Sam; Clifford, Sam; Funk, Sebastian; Gibbs, Hamish; Liu, Yang; Pearson, Carl AB; Bosse, Nikos I; Centre for the Mathematical Modelling of Infectious Diseases COV; Eggo, Rosalind M; Kucharski, Adam J; Edmunds, W John

Invisible spread of SARS-CoV-2 - Authors' reply. (2020) Kucharski, Adam J; Eggo, Rosalind M

COVID-19 pandemic in west Africa. (2020) Martinez-Alvarez, Melisa; Jarde, Alexander; Usuf, Effua; Brotherton, Helen; Bittaye, Mustapha; Samateh, Ahmadou L; Antonio, Martin; Vives-Tomas, Joan; D'Alessandro, Umberto; Roca, Anna

March 2020

The effect of control strategies to reduce social mixing on outcomes of the COVID-19 epidemic in Wuhan, China: a modelling study. (2020) Prem, Kiesha; Liu, Yang; Russell, Timothy W; Kucharski, Adam J; Eggo, Rosalind M; Davies, Nicholas; Centre for the Mathematical Modelling of Infectious Diseases COV; Jit, Mark; Klepac, Petra

What have we learnt from measles outbreaks in 3 English cities? A qualitative exploration of factors influencing vaccination uptake in Romanian and Roma Romanian communities. (2020) Bell, Sadie; Saliba, Vanessa; Ramsay, Mary; Mounier-Jack, Sandra

Early dynamics of transmission and control of COVID-19: a mathematical modelling study. (2020) Kucharski, Adam J; Russell, Timothy W; Diamond, Charlie; Liu, Yang; Edmunds, John; Funk, Sebastian; Eggo, Rosalind M; Centre for Mathematical Modelling of Infectious Diseases COVID-1

Genomic diversity of <i>Escherichia coli</i> isolates from non-human primates in the Gambia. (2020) Foster-Nyarko, Ebenezer; Alikhan, Nabil-Fareed; Ravi, Anuradha; Thilliez, Gaëtan; Thomson, Nicholas; Baker, David; Kay, Gemma; Cramer, Jennifer D; O’Grady, Justin; Antonio, Martin; Pallen, Mark J

February 2020

Neurodevelopment of children exposed intra-uterus by Zika virus: A case series. (2020) Peçanha, Pedro Massaroni; Gomes Junior, Saint Clair; Pone, Sheila Moura; Pone, Marcos Vinicius da Silva; Vasconcelos, Zilton; Zin, Andrea; Vilibor, Renata Hydee Hasue; Costa, Roozemeria Pereira; Meio, Maria Dalva Barbosa Baker; Nielsen-Saines, Karin; Brasil, Patricia; Brickley, Elizabeth; Lopes Moreira, Maria Elisabeth

Estimated effectiveness of symptom and risk screening to prevent the spread of COVID-19. (2020) Gostic, Katelyn; Gomez, Ana Cr; Mummah, Riley O; Kucharski, Adam J; Lloyd-Smith, James O

Shedding of Yellow Fever Virus From an Imported Case in the Netherlands After Travel to Brazil. (2020) Phan, My VT; Mendonca Melo, Mariana; van Nood, Els; Aron, Georgina; Kreeft-Voermans, Jolanda JC; Koopmans, Marion PG; Reusken, Chantal; GeurtsvanKessel, Corine H; Cotten, Matthew

Early dynamics of transmission and control of COVID-19: a mathematical modelling study. (2020) Kucharski, Adam J; Russell, Timothy W; Diamond, Charlie; Liu, Yang; Edmunds, John; Funk, Sebastian; Eggo, Rosalind M

Diarrhoeal disease and subsequent risk of death in infants and children residing in low-income and middle-income countries: analysis of the GEMS case-control study and 12-month GEMS-1A follow-on study. (2020) Levine, Myron M; Nasrin, Dilruba; Acácio, Sozinho; Bassat, Quique; Powell, Helen; Tennant, Sharon M; Sow, Samba O; Sur, Dipika; Zaidi, Anita KM; Faruque, Abu SG; Hossain, M Jahangir; Alonso, Pedro L; Breiman, Robert F; O'Reilly, Ciara E; Mintz, Eric D; Omore, Richard; Ochieng, John B; Oundo, Joseph O; Tamboura, Boubou; Sanogo, Doh; Onwuchekwa, Uma; Manna, Byomkesh; Ramamurthy, Thandavarayan; Kanungo, Suman; Ahmed, Shahnawaz; Qureshi, Shahida; Quadri, Farheen; Hossain, Anowar; Das, Sumon K; Antonio, Martin; Saha, Debasish; Mandomando, Inacio; Blackwelder, William C; Farag, Tamer; Wu, Yukun; Houpt, Eric R; Verweiij, Jaco J; Sommerfelt, Halvor; Nataro, James P; Robins-Browne, Roy M; Kotloff, Karen L

January 2020

Zika seroprevalence declines and neutralizing antibodies wane in adults following outbreaks in French Polynesia and Fiji. (2020) Henderson, Alasdair D; Aubry, Maite; Kama, Mike; Vanhomwegen, Jessica; Teissier, Anita; Mariteragi-Helle, Teheipuaura; Paoaafaite, Tuterarii; Teissier, Yoann; Manuguerra, Jean-Claude; Edmunds, John; Whitworth, Jimmy; Watson, Conall H; Lau, Colleen L; Cao-Lormeau, Van-Mai; Kucharski, Adam J

Correction to: Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia. (2020) Kamau, Everlyn; Oketch, John W; de Laurent, Zaydah R; Phan, My VT; Agoti, Charles N; Nokes, D James; Cotten, Matthew

The cost of insecurity: from flare-up to control of a major Ebola virus disease hotspot during the outbreak in the Democratic Republic of the Congo, 2019. (2020) Jombart, Thibaut; Jarvis, Christopher I; Mesfin, Samuel; Tabal, Nabil; Mossoko, Mathias; Mpia, Luigino Minikulu; Abedi, Aaron Aruna; Chene, Sonia; Forbin, Ekokobe Elias; Belizaire, Marie Roseline D; de Radiguès, Xavier; Ngombo, Richy; Tutu, Yannick; Finger, Flavio; Crowe, Madeleine; Edmunds, W John; Nsio, Justus; Yam, Abdoulaye; Diallo, Boubacar; Gueye, Abdou Salam; Ahuka-Mundeke, Steve; Yao, Michel; Fall, Ibrahima Socé picture_as_pdf

Evolution of Mycobacterium tuberculosis complex lineages and their role in an emerging threat of multidrug resistant tuberculosis in Bamako, Mali. (2020) Senghore, Madikay; Diarra, Bassirou; Gehre, Florian; Otu, Jacob; Worwui, Archibald; Muhammad, Abdul Khalie; Kwambana-Adams, Brenda; Kay, Gemma L; Sanogo, Moumine; Baya, Bocar; Orsega, Susan; Doumbia, Seydou; Diallo, Souleymane; de Jong, Bouke C; Pallen, Mark J; Antonio, Martin

Comparative genomics shows differences in the electron transport and carbon metabolic pathways of Mycobacterium africanum relative to Mycobacterium tuberculosis and suggests an adaptation to low oxygen tension. (2020) Ofori-Anyinam, Boatema; Riley, Abi Janet; Jobarteh, Tijan; Gitteh, Ensa; Sarr, Binta; Faal-Jawara, Tutty Isatou; Rigouts, Leen; Senghore, Madikay; Kehinde, Aderemi; Onyejepu, Nneka; Antonio, Martin; de Jong, Bouke C; Gehre, Florian; Meehan, Conor J

Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia. (2020) Kamau, Everlyn; Oketch, John W; de Laurent, Zaydah R; Phan, My VT; Agoti, Charles N; Nokes, D James; Cotten, Matthew

Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with childhood pneumonia in Kilifi, Kenya. (2020) Otieno, Grieven P; Murunga, Nickson; Agoti, Charles N; Gallagher, Katherine E; Awori, Juliet O; Nokes, D James

Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with pneumonia in Kilifi, Kenya. (2020) Otieno, Grieven P; Murunga, Nickson; Agoti, Charles N; Gallagher, Katherine E; Awori, Juliet O; Nokes, D James

Re-sensitization of Mycobacterium smegmatis to Rifampicin Using CRISPR Interference Demonstrates Its Utility for the Study of Non-essential Drug Resistance Traits. (2020) Faulkner, Valwynne; Cox, Adrienne Adele; Goh, Shan; van Bohemen, Annelies; Gibson, Amanda J; Liebster, Oliver; Wren, Brendan W; Willcocks, Sam; Kendall, Sharon L