Year Authors/Creators Item Type Full Text

A

Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis. (2017) Agoti, Charles N; Munywoki, Patrick K; Phan, My VT; Otieno, James R; Kamau, Everlyn; Bett, Anne; Kombe, Ivy; Githinji, George; Medley, Graham F; Cane, Patricia A; Kellam, Paul; Cotten, Matthew; Nokes, D James

A26 Transmission patterns and evolution of RSV in a community outbreak identified by genomic analysis. (2017) Agoti, Charles N; Munywoki, Patrick K; Phan, My VT; Otieno, James R; Kamau, Everlyn; Bett, Anne; Kombe, Ivy; Githinji, George; Medley, Graham F; Cane, Patricia A; Kellam, Paul; Cotton, Matthew; Nokes, D James

A phylogenetic study of dengue virus in urban Vietnam shows long-term persistence of endemic strains. (2023) Ashall, James; Shah, Sonal; Biggs, Joseph R; Chang, Jui-Ning R; Jafari, Yalda; Brady, Oliver J; Mai, Huynh Kim; Lien, Le Thuy; Do Thai, Hung; Nguyen, Hien Anh Thi; Anh, Dang Duc; Iwasaki, Chihiro; Kitamura, Noriko; Van Loock, Marnix; Herrera-Taracena, Guillermo; Rasschaert, Freya; Van Wesenbeeck, Liesbeth; Yoshida, Lay-Myint; Hafalla, Julius Clemence R; Hue, Stephane; Hibberd, Martin L

C

Alternate primers for whole-genome SARS-CoV-2 sequencing. (2021) Cotten, Matthew; Lule Bugembe, Dan; Kaleebu, Pontiano; V T Phan, My

Unique protein features of SARS-CoV-2 relative to other Sarbecoviruses. (2021) Cotten, Matthew; Robertson, David L; Phan, My VT

D

Rising prevalence of non-B HIV-1 subtypes in North Carolina and evidence for local onward transmission. (2017) Dennis, Ann M; Hué, Stephane; Learner, Emily; Sebastian, Joseph; Miller, William C; Eron, Joseph J

G

Pervasive and non-random recombination in near full-length HIV genomes from Uganda. (2020) Grant, Heather E; Hodcroft, Emma B; Ssemwanga, Deogratius; Kitayimbwa, John M; Yebra, Gonzalo; Esquivel Gomez, Luis Roger; Frampton, Dan; Gall, Astrid; Kellam, Paul; de Oliveira, Tulio; Bbosa, Nicholas; Nsubuga, Rebecca N; Kibengo, Freddie; Kwan, Tsz Ho; Lycett, Samantha; Kao, Rowland; Robertson, David L; Ratmann, Oliver; Fraser, Christophe; Pillay, Deenan; Kaleebu, Pontiano; Leigh Brown, Andrew J

L

Evolution and phylogeographic dissemination of endemic porcine picornaviruses in Vietnam. (2016) Lu, Lu; Van Dung, Nguyen; Bryant, Juliet E; Carrique-Mas, Juan; Van Cuong, Nguyen; Anh, Pham Honh; Rabaa, Maia A; Baker, Stephen; Simmonds, Peter; Woolhouse, Mark E

M

Increased resolution of African swine fever virus genome patterns based on profile HMMs of protein domains. (2020) Masembe, Charles; Phan, My VT; Robertson, David L; Cotten, Matthew

O

A49 Molecular evolutionary dynamics of respiratory syncytial virus group A in recurrent epidemics in coastal Kenya. (2017) Otieno, James R; Agoti, Charles N; Gitahi, Caroline W; Bett, Ann; Ngama, Mwanajuma; Medley, Graham F; Cane, Patricia A; Nokes, D James

P

Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection. (2016) Phan, My VT; Anh, Pham Hong; Cuong, Nguyen Van; Munnink, Bas B Oude; van der Hoek, Lia; My, Phuc Tran; Tri, Tue Ngo; Bryant, Juliet E; Baker, Stephen; Thwaites, Guy; Woolhouse, Mark; Kellam, Paul; Rabaa, Maia A; Cotten, Matthew; VIZIONS Consortium

R

A39 Reconstruction of Ebola chains of transmission using sequence and epidemiological data. (2019) Robert, A; Edmunds, J; Eggo, R; Henao-Restrepo, A-M; Gsell, P-S; Watson, CH; Longini, IM; Rambaut, A; Camacho, A; Hué, S

Quantifying the value of viral genomics when inferring who infected whom in the 2014-16 Ebola virus outbreak in Guinea. (2023) Robert, Alexis; Tsui Lok Hei, Joseph; Watson, Conall H; Gsell, Pierre-Stéphane; Hall, Yper; Rambaut, Andrew; Longini, Ira M; Sakoba, Keïta; Kucharski, Adam J; Touré, Alhassane; Danmadji Nadlaou, Sévérine; Saidou Barry, Mamadou; Fofana, Thierno Oumar; Lansana Kaba, Ibrahima; Sylla, Lansana; Diaby, Mohamed Lamine; Soumah, Ousmane; Diallo, Abdourahime; Niare, Amadou; Diallo, Abdourahamane; Eggo, Rosalind M; Caroll, Miles W; Henao-Restrepo, Ana Maria; Edmunds, W John; Hué, Stéphane

V

HIV-2 diversity displays two clades within group A with distinct geographical distribution and evolution. (2021) Visseaux, Benoit; Bertine, Mélanie; Le Hingrat, Quentin; Ferré, Valentine; Charpentier, Charlotte; Collin, Fidéline; Damond, Florence; Matheron, Sophie; Hué, Stéphane; Descamps, Diane

W

Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiver. (2018) Wymant, Chris; Blanquart, François; Golubchik, Tanya; Gall, Astrid; Bakker, Margreet; Bezemer, Daniela; Croucher, Nicholas J; Hall, Matthew; Hillebregt, Mariska; Ong, Swee Hoe; Ratmann, Oliver; Albert, Jan; Bannert, Norbert; Fellay, Jacques; Fransen, Katrien; Gourlay, Annabelle; Grabowski, M Kate; Gunsenheimer-Bartmeyer, Barbara; Günthard, Huldrych F; Kivelä, Pia; Kouyos, Roger; Laeyendecker, Oliver; Liitsola, Kirsi; Meyer, Laurence; Porter, Kholoud; Ristola, Matti; van Sighem, Ard; Berkhout, Ben; Cornelissen, Marion; Kellam, Paul; Reiss, Peter; Fraser, Christophe; BEEHIVE Collaboration