Items where the Publication is Scientific Reports

Year Authors/Creators Item Type Full Text

2023

Reduced ability to neutralize the Omicron variant among adults after infection and complete vaccination with BNT162b2, ChAdOx1, or CoronaVac and heterologous boosting. (2023) Espíndola, Otávio Melo; Fuller, Trevon L; de Araújo, Mia Ferreira; Tort, Luis Fernando Lopez; Guaraldo, Lusiele; Calvet, Guilherme; Resende, Paola; Bonaldo, Myrna; Whitworth, Jimmy; Smith, Chris; Siqueira, Marilda; Brasil, Patrícia

Towards environmental detection, quantification, and molecular characterization of Anopheles stephensi and Aedes aegypti from experimental larval breeding sites. (2023) Kristan, Mojca; Acford-Palmer, Holly; Oliveira Campos, Monica; Collins, Emma L; Phelan, Jody; Portwood, Natalie M; Pelloquin, Bethanie; Clarke, Sian; Lines, Jo; Clark, Taane G; Walker, Thomas; Campino, Susana; Messenger, Louisa A

2022

Transmission of gram-negative antibiotic-resistant bacteria following differing exposure to antibiotic-resistance reservoirs in a rural community: a modelling study for bloodstream infections. (2022) Allel, Kasim; Goscé, Lara; Araos, Rafael; Toro, Daniel; Ferreccio, Catterina; Munita, Jose M; Undurraga, Eduardo A; Panovska-Griffiths, Jasmina

Systematic review and meta-analysis of cognitive impairment in myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS). (2022) Aoun Sebaiti, Mehdi; Hainselin, Mathieu; Gounden, Yannick; Sirbu, Carmen Adella; Sekulic, Slobodan; Lorusso, Lorenzo; Nacul, Luis; Authier, François Jérôme

Reliability, usability and identified need for home-based cardiometabolic health self-assessment during the COVID-19 pandemic in Soweto, South Africa. (2022) Calvert, Clara; Kolkenbeck-Ruh, Andrea; Crouch, Simone H; Soepnel, Larske M; Ware, Lisa J

High-throughput barcoding method for the genetic surveillance of insecticide resistance and species identification in Anopheles gambiae complex malaria vectors. (2022) Campos, Monica; Phelan, Jody; Spadar, Anton; Collins, Emma; Gonçalves, Adéritow; Pelloquin, Bethanie; Vaselli, Natasha Marcella; Meiwald, Anne; Clark, Emma; Stica, Caleb; Orsborne, James; Sylla, Moussa; Edi, Constant; Camara, Denka; Mohammed, Abdul Rahim; Afrane, Yaw Asare; Kristan, Mojca; Walker, Thomas; Gomez, Lara Ferrero; Messenger, Louisa A; Clark, Taane G; Campino, Susana

The control of malaria vectors in rice fields: a systematic review and meta-analysis. (2022) Chan, Kallista; Bottomley, Christian; Saito, Kazuki; Lines, Jo; Tusting, Lucy S

Risk factor targeting for vaccine prioritization during the COVID-19 pandemic. (2022) Chapman, Lloyd AC; Shukla, Poojan; Rodríguez-Barraquer, Isabel; Shete, Priya B; León, Tomás M; Bibbins-Domingo, Kirsten; Rutherford, George W; Schechter, Robert; Lo, Nathan C

Survival analysis of localized prostate cancer with deep learning. (2022) Dai, Xin; Park, Ji Hwan; Yoo, Shinjae; D'Imperio, Nicholas; McMahon, Benjamin H; Rentsch, Christopher T; Tate, Janet P; Justice, Amy C

Disruption of spatiotemporal clustering in dengue cases by wMel Wolbachia in Yogyakarta, Indonesia. (2022) Dufault, Suzanne M; Tanamas, Stephanie K; Indriani, Citra; Utarini, Adi; Ahmad, Riris Andono; Jewell, Nicholas P; Simmons, Cameron P; Anders, Katherine L

Geographic and temporal variation in racial and ethnic disparities in SARS-CoV-2 positivity between February 2020 and August 2021 in the United States. (2022) Ferguson, Jacqueline M; Justice, Amy C; Osborne, Thomas F; Magid, Hoda S Abdel; Purnell, Amanda L; Rentsch, Christopher T

Estimating female malaria mosquito age by quantifying Y-linked genes in stored male spermatozoa. (2022) Madan, Damian; Rivera, Rafael; Ortega, Corrie; Touchon, Justin C; Kimball, Corinna; van Gemert, Geert-Jan; Graumans, Wouter; Matsuura, Stephanie; Parghi, Sean S; Bell, David; Bousema, Teun; Drakeley, Chris; Collins, Katharine A; Burkot, Thomas R

No evidence of increased mutations in the germline of a group of British nuclear test veterans. (2022) Moorhouse, Alexander J; Scholze, Martin; Sylvius, Nicolas; Gillham, Clare; Rake, Christine; Peto, Julian; Anderson, Rhona; Dubrova, Yuri E

Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning. (2022) Nickbakhsh, Sema; Hughes, Joseph; Christofidis, Nicolaos; Griffiths, Emily; Shaaban, Sharif; Enright, Jessica; Smollett, Katherine; Nomikou, Kyriaki; Palmalux, Natasha; Tong, Lily; Carmichael, Stephen; Sreenu, Vattipally B; Orton, Richard; Goldstein, Emily J; Tomb, Rachael M; COVID-19 Genomics UK (COG-UK) Consortium; Templeton, Kate; Gunson, Rory N; da Silva Filipe, Ana; Milosevic, Catriona; Thomson, Emma; Robertson, David L; Holden, Matthew TG; Illingworth, Christopher JR; Smith-Palmer, Alison

Evaluation of age-specific causes of death in the context of the Italian longevity transition. (2022) Nigri, Andrea; Aburto, José Manuel; Basellini, Ugofilippo; Bonetti, Marco

British surname origins, population structure and health outcomes-an observational study of hospital admissions. (2022) Petersen, Jakob; Kandt, Jens; Longley, Paul A

Predicting the impacts of land management for sustainable development on depression risk in a Ugandan case study. (2022) Pienkowski, Thomas; Keane, Aidan; Kinyanda, Eugene; Asiimwe, Caroline; Milner-Gulland, EJ

Distribution of Burkholderia pseudomallei within a 300-cm deep soil profile: implications for environmental sampling. (2022) Pongmala, Khemngeun; Pierret, Alain; Oliva, Priscia; Pando, Anne; Davong, Viengmon; Rattanavong, Sayaphet; Silvera, Norbert; Luangraj, Manophab; Boithias, Laurie; Xayyathip, Khampaseuth; Menjot, Ludovic; Macouin, Melina; Rochelle-Newall, Emma; Robain, Henri; Vongvixay, Amphone; Simpson, Andrew JH; Dance, David AB; Ribolzi, Olivier

Multi-centre discriminating concentration determination of broflanilide and potential for cross-resistance to other public health insecticides in Anopheles vector populations. (2022) Portwood, Natalie M; Shayo, Magreth F; Tungu, Patrick K; Mbewe, Njelembo J; Mlay, George; Small, Graham; Snetselaar, Janneke; Kristan, Mojca; Levy, Prisca; Walker, Thomas; Kirby, Matthew J; Kisinza, William; Mosha, Franklin W; Rowland, Mark; Messenger, Louisa A

Genomic analysis of hypervirulent Klebsiella pneumoniae reveals potential genetic markers for differentiation from classical strains. (2022) Spadar, Anton; Perdigão, João; Campino, Susana; Clark, Taane G

Genomic epidemiological analysis of Klebsiella pneumoniae from Portuguese hospitals reveals insights into circulating antimicrobial resistance. (2022) Spadar, Anton; Phelan, Jody; Elias, Rita; Modesto, Ana; Caneiras, Cátia; Marques, Cátia; Lito, Luís; Pinto, Margarida; Cavaco-Silva, Patrícia; Ferreira, Helena; Pomba, Constança; Da Silva, Gabriela J; Saavedra, Maria José; Melo-Cristino, José; Duarte, Aida; Campino, Susana; Perdigão, João; Clark, Taane G

Pyrethroid-piperonyl butoxide (PBO) nets reduce the efficacy of indoor residual spraying with pirimiphos-methyl against pyrethroid-resistant malaria vectors. (2022) Syme, Thomas; Gbegbo, Martial; Obuobi, Dorothy; Fongnikin, Augustin; Agbevo, Abel; Todjinou, Damien; Ngufor, Corine

Transmission dynamics of SARS-CoV-2 in a strictly-Orthodox Jewish community in the UK. (2022) Waites, William; Pearson, Carl AB; Gaskell, Katherine M; House, Thomas; Pellis, Lorenzo; Johnson, Marina; Gould, Victoria; Hunt, Adam; Stone, Neil RH; Kasstan, Ben; Chantler, Tracey; Lal, Sham; Roberts, Chrissy H; Goldblatt, David; CMMID COVID-19 Working Group; Marks, Michael; Eggo, Rosalind M

The influence of risk perceptions on close contact frequency during the SARS-CoV-2 pandemic. (2022) Wambua, James; Hermans, Lisa; Coletti, Pietro; Verelst, Frederik; Willem, Lander; Jarvis, Christopher I; Gimma, Amy; Wong, Kerry LM; Lajot, Adrien; Demarest, Stefaan; Edmunds, W John; Faes, Christel; Beutels, Philippe; Hens, Niel

Geographic social inequalities in information-seeking response to the COVID-19 pandemic in China: longitudinal analysis of Baidu Index. (2022) Wang, Zhicheng; Xiao, Hong; Lin, Leesa; Tang, Kun; Unger, Joseph M

Sero-epidemiological study of arbovirus infection following the 2015-2016 Zika virus outbreak in Cabo Verde. (2022) Ward, Daniel; Gomes, Ana Rita; Tetteh, Kevin KA; Sepúlveda, Nuno; Gomez, Lara Ferrero; Campino, Susana; Clark, Taane G

The association between maternal characteristics and SARS-CoV-2 in pregnancy: a population-based registry study in Sweden and Norway. (2022) Örtqvist, Anne K; Magnus, Maria C; Söderling, Jonas; Oakley, Laura; Nybo Andersen, Anne-Marie; Håberg, Siri E; Stephansson, Olof

2021

The in vitro and in vivo anti-virulent effect of organic acid mixtures against Eimeria tenella and Eimeria bovis. (2021) Balta, Igori; Marcu, Adela; Linton, Mark; Kelly, Carmel; Stef, Lavinia; Pet, Ioan; Ward, Patrick; Pircalabioru, Gratiela Gradisteanu; Chifiriuc, Carmen; Gundogdu, Ozan; Callaway, Todd; Corcionivoschi, Nicolae

Comparison of microsatellite instability detection by immunohistochemistry and molecular techniques in colorectal and endometrial cancer. (2021) Dedeurwaerdere, Franceska; Claes, Kathleen Bm; Van Dorpe, Jo; Rottiers, Isabelle; Van der Meulen, Joni; Breyne, Joke; Swaerts, Koen; Martens, Geert

Comparison of platforms for testing antibodies to Chlamydia trachomatis antigens in the Democratic Republic of the Congo and Togo. (2021) Gwyn, Sarah; Awoussi, Marcel S; Bakhtiari, Ana; Bronzan, Rachel N; Crowley, Kathryn; Harding-Esch, Emma M; Kassankogno, Yao; Kilangalanga, Janvier N; Makangila, Felix; Mupoyi, Sylvain; Ngondi, Jeremiah; Ngoyi, Bonaventure; Palmer, Stephanie; Randall, Jessica M; Seim, Anders; Solomon, Anthony W; Stewart, Raymond; Togbey, Kwamy; Uvon, Pitchouna A; Martin, Diana L

Data-driven identification of ageing-related diseases from electronic health records. (2021) Kuan, Valerie; Fraser, Helen C; Hingorani, Melanie; Denaxas, Spiros; Gonzalez-Izquierdo, Arturo; Direk, Kenan; Nitsch, Dorothea; Mathur, Rohini; Parisinos, Constantinos A; Lumbers, R Thomas; Sofat, Reecha; Wong, Ian CK; Casas, Juan P; Thornton, Janet M; Hemingway, Harry; Partridge, Linda; Hingorani, Aroon D

Socioeconomic inequalities in treatment and relative survival among patients with diffuse large B-cell lymphoma: a Hong Kong population-based study. (2021) Lee, Shing Fung; Evens, Andrew M; Ng, Andrea K; Luque-Fernandez, Miguel-Angel

High prevalence of antibiotic resistance in commensal Escherichia coli from healthy human sources in community settings. (2021) Nji, Emmanuel; Kazibwe, Joseph; Hambridge, Thomas; Joko, Carolyn Alia; Larbi, Amma Aboagyewa; Damptey, Lois Afua Okyerewaa; Nkansa-Gyamfi, Nana Adoma; Stålsby Lundborg, Cecilia; Lien, La Thi Quynh

An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities. (2021) O'Sullivan, Denise M; Doyle, Ronan M; Temisak, Sasithon; Redshaw, Nicholas; Whale, Alexandra S; Logan, Grace; Huang, Jiabin; Fischer, Nicole; Amos, Gregory CA; Preston, Mark D; Marchesi, Julian R; Wagner, Josef; Parkhill, Julian; Motro, Yair; Denise, Hubert; Finn, Robert D; Harris, Kathryn A; Kay, Gemma L; O'Grady, Justin; Ransom-Jones, Emma; Wu, Huihai; Laing, Emma; Studholme, David J; Benavente, Ernest Diez; Phelan, Jody; Clark, Taane G; Moran-Gilad, Jacob; Huggett, Jim F

Characterizing the genomic variation and population dynamics of Plasmodium falciparum malaria parasites in and around Lake Victoria, Kenya. (2021) Osborne, Ashley; Manko, Emilia; Takeda, Mika; Kaneko, Akira; Kagaya, Wataru; Chan, Chim; Ngara, Mtakai; Kongere, James; Kita, Kiyoshi; Campino, Susana; Kaneko, Osamu; Gitaka, Jesse; Clark, Taane G

Classification algorithm for congenital Zika Syndrome: characterizations, diagnosis and validation. (2021) Veiga, Rafael V; Schuler-Faccini, Lavinia; França, Giovanny VA; Andrade, Roberto FS; Teixeira, Maria Glória; Costa, Larissa C; Paixão, Enny S; Costa, Maria da Conceição N; Barreto, Maurício L; Oliveira, Juliane F; Oliveira, Wanderson K; Cardim, Luciana L; Rodrigues, Moreno S

MYCN-induced nucleolar stress drives an early senescence-like transcriptional program in hTERT-immortalized RPE cells. (2021) Zanotti, Sofia; Vanhauwaert, Suzanne; Van Neste, Christophe; Olexiouk, Volodimir; Van Laere, Jolien; Verschuuren, Marlies; Van der Meulen, Joni; Mus, Liselot M; Durinck, Kaat; Tilleman, Laurentijn; Deforce, Dieter; Van Nieuwerburgh, Filip; Hogarty, Michael D; Decaesteker, Bieke; De Vos, Winnok H; Speleman, Frank

2020

Antiviral activity of a novel mixture of natural antimicrobials, in vitro, and in a chicken infection model in vivo. (2020) Balta, Igori; Stef, Lavinia; Pet, Ioan; Ward, Patrick; Callaway, Todd; Ricke, Steven C; Gundogdu, Ozan; Corcionivoschi, Nicolae

Distinct lung microbiota associate with HIV-associated chronic lung disease in children. (2020) Bhadriraju, Sudha; Fadrosh, Douglas W; Shenoy, Meera K; Lin, Din L; Lynch, Kole V; McCauley, Kathryn; Ferrand, Rashida A; Majonga, Edith D; McHugh, Grace; Huang, Laurence; Lynch, Susan V; Metcalfe, John Z

G-computation, propensity score-based methods, and targeted maximum likelihood estimator for causal inference with different covariates sets: a comparative simulation study. (2020) Chatton, Arthur; Le Borgne, Florent; Leyrat, Clémence; Gillaizeau, Florence; Rousseau, Chloé; Barbin, Laetitia; Laplaud, David; Léger, Maxime; Giraudeau, Bruno; Foucher, Yohann

Association between admission criteria and body composition among young children with moderate acute malnutrition, a cross-sectional study from Burkina Faso. (2020) Fabiansen, Christian; Cichon, Bernardette; Yaméogo, Charles W; Iuel-Brockdorf, Ann-Sophie; Phelan, Kevin PQ; Wells, Jonathan C; Ritz, Christian; Filteau, Suzanne; Briend, André; Christensen, Vibeke B; Ashorn, Per; Michaelsen, Kim F; Shepherd, Susan; Friis, Henrik

Evaluation of computer aided detection of tuberculosis on chest radiography among people with diabetes in Karachi Pakistan. (2020) Habib, Shifa Salman; Rafiq, Sana; Zaidi, Syed Mohammad Asad; Ferrand, Rashida Abbas; Creswell, Jacob; Van Ginneken, Bram; Jamal, Wafa Zehra; Azeemi, Kiran Sohail; Khowaja, Saira; Khan, Aamir

High prevalence of albuminuria amongst people who inject drugs: A cross-sectional study. (2020) McGowan, CR; Wright, T; Nitsch, D; Lewer, D; Brathwaite, R; Scott, J; Hope, V; Ciccarone, D; Dunn, J; Gillmore, J; Story, A; Harris, M

Efficacy of Royal Guard, a new alpha-cypermethrin and pyriproxyfen treated mosquito net, against pyrethroid-resistant malaria vectors. (2020) Ngufor, Corine; Agbevo, Abel; Fagbohoun, Josias; Fongnikin, Augustin; Rowland, Mark

Evidence of extrinsic factors dominating intrinsic blood host preferences of major African malaria vectors. (2020) Orsborne, James; Mohammed, Abdul Rahim; Jeffries, Claire L; Kristan, Mojca; Afrane, Yaw A; Walker, Thomas; Yakob, Laith

Adaption of the ex vivo mycobacterial growth inhibition assay for use with murine lung cells. (2020) Painter, Hannah; Prabowo, Satria A; Cia, Felipe; Stockdale, Lisa; Tanner, Rachel; Willcocks, Samuel; Reljic, Rajko; Fletcher, Helen A; Zelmer, Andrea

Pseudotyping of VSV with Ebola virus glycoprotein is superior to HIV-1 for the assessment of neutralising antibodies. (2020) Steeds, Kimberley; Hall, Yper; Slack, Gillian S; Longet, Stephanie; Strecker, Thomas; Fehling, Sarah Katharina; Wright, Edward; Bore, Joseph Akoi; Koundouno, Fara Raymond; Konde, Mandy Kader; Hewson, Roger; Hiscox, Julian A; Pollakis, Georgios; Carroll, Miles W

2019

Use of reliable contraceptives and its correlates among women participating in Simulated HIV vaccine efficacy trials in key-populations in Uganda. (2019) Abaasa, Andrew; Todd, Jim; Mayanja, Yunia; Price, Matt; Fast, Patricia E; Kaleebu, Pontiano; Nash, Stephen

High susceptibility, viral dynamics and persistence of South American Zika virus in New World monkey species. (2019) Berry, Neil; Ferguson, Deborah; Ham, Claire; Hall, Jo; Jenkins, Adrian; Giles, Elaine; Devshi, Dhruti; Kempster, Sarah; Rose, Nicola; Dowall, Stuart; Fritzsche, Martin; Bleazard, Thomas; Hewson, Roger; Almond, Neil

The relationship between insecticide resistance, mosquito age and malaria prevalence in Anopheles gambiae s.l. from Guinea. (2019) Collins, Emma; Vaselli, Natasha M; Sylla, Moussa; Beavogui, Abdoul H; Orsborne, James; Lawrence, Gena; Wiegand, Ryan E; Irish, Seth R; Walker, Thomas; Messenger, Louisa A

The risks of HCV infection among Brazilian crack cocaine users: incorporating diagnostic test uncertainty. (2019) Coutinho, Carolina; Bastos, Leonardo S; da Mota, Jurema Corrêa; Toledo, Lidiane; Costa, Katia; Bertoni, Neilane; Bastos, Francisco I

Acute LPS sensitization and continuous infusion exacerbates hypoxic brain injury in a piglet model of neonatal encephalopathy. (2019) Martinello, Kathryn A; Meehan, Christopher; Avdic-Belltheus, Adnan; Lingam, Ingran; Ragab, Sara; Hristova, Mariya; Tann, Cally J; Peebles, Donald; Hagberg, Henrik; Wolfs, Tim GAM; Klein, Nigel; Tachtsidis, Ilias; Golay, Xavier; Kramer, Boris W; Fleiss, Bobbi; Gressens, Pierre; Robertson, Nicola J

Microarray assessment of N-glycan-specific IgE and IgG profiles associated with Schistosoma mansoni infection in rural and urban Uganda. (2019) Nkurunungi, Gyaviira; van Diepen, Angela; Nassuuna, Jacent; Sanya, Richard E; Nampijja, Margaret; Nambuya, Irene; Kabagenyi, Joyce; Serna, Sonia; Reichardt, Niels-Christian; van Ree, Ronald; Webb, Emily L; Elliott, Alison M; Yazdanbakhsh, Maria; Hokke, Cornelis H

The risk of selenium deficiency in Malawi is large and varies over multiple spatial scales. (2019) Phiri, Felix P; Ander, E Louise; Bailey, Elizabeth H; Chilima, Benson; Chilimba, Allan DC; Gondwe, Jellita; Joy, Edward JM; Kalimbira, Alexander A; Kumssa, Diriba B; Lark, R Murray; Phuka, John C; Salter, Andrew; Suchdev, Parminder S; Watts, Michael J; Young, Scott D; Broadley, Martin R

Development and validation of a prediction model for active tuberculosis case finding among HIV-negative/unknown populations. (2019) Shih, Yun-Ju; Ayles, Helen; Lönnroth, Knut; Claassens, Mareli; Lin, Hsien-Ho

High rates of maternal depression amongst Syrian refugees in Lebanon - a pilot study. (2019) Stevenson, Kerrie; Alameddine, Reina; Rukbi, Ghaith; Chahrouri, Mario; Usta, Jinan; Saab, Bassem; Bennett, Phillip; Glover, Vivette; Reynolds, Rebecca M

Potential population level impact on tuberculosis incidence of using an mRNA expression signature correlate-of-risk test to target tuberculosis preventive therapy. (2019) Sumner, Tom; Scriba, Thomas J; Penn-Nicholson, Adam; Hatherill, Mark; White, Richard G

Space-time clustering of recently-diagnosed tuberculosis and impact of ART scale-up: Evidence from an HIV hyper-endemic rural South African population. (2019) Tomita, Andrew; Smith, Catherine M; Lessells, Richard J; Pym, Alexander; Grant, Alison D; de Oliveira, Tulio; Tanser, Frank

2018

Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches. (2018) Otchere, Isaac Darko; Coscollá, Mireia; Sánchez-Busó, Leonor; Asante-Poku, Adwoa; Brites, Daniela; Loiseau, Chloe; Meehan, Conor; Osei-Wusu, Stephen; Forson, Audrey; Laryea, Clement; Yahayah, Abdallah Iddrisu; Baddoo, Akosua; Ansa, Gloria Akosua; Aboagye, Samuel Yaw; Asare, Prince; Borrell, Sonia; Gehre, Florian; Beckert, Patrick; Kohl, Thomas A; N'dira, Sanoussi; Beisel, Christian; Antonio, Martin; Niemann, Stefan; de Jong, Bouke C; Parkhill, Julian; Harris, Simon R; Gagneux, Sebastien; Yeboah-Manu, Dorothy

Induction of Human T-cell and Cytokine Responses Following Vaccination with a Novel Influenza Vaccine. (2018) Skibinski, David AG; Jones, Leigh Ann; Zhu, Yuan O; Xue, Lin Wu; Au, Bijin; Lee, Bernett; Naim, Ahmad Nazri Mohamed; Lee, Audrey; Kaliaperumal, Nivashini; Low, Jenny GH; Lee, Lawrence S; Poidinger, Michael; Saudan, Philippe; Bachmann, Martin; Ooi, Eng Eong; Hanson, Brendon J; Novotny-Diermayr, Veronica; Matter, Alex; Fairhurst, Anna-Marie; Hibberd, Martin L; Connolly, John E