Year Authors/Creators Item Type Full Text

2021

Using machine learning and big data to explore the drug resistance landscape in HIV. (2021) Blassel, Luc; Tostevin, Anna; Villabona-Arenas, Christian Julian; Peeters, Martine; Hué, Stéphane; Gascuel, Olivier; UK HIV Drug Resistance Database

Estimating the contribution of HIV-infected adults to household pneumococcal transmission in South Africa, 2016-2018: A hidden Markov modelling study. (2021) Thindwa, Deus; Wolter, Nicole; Pinsent, Amy; Carrim, Maimuna; Ojal, John; Tempia, Stefano; Moyes, Jocelyn; McMorrow, Meredith; Kleynhans, Jackie; Gottberg, Anne von; French, Neil; PHIRST group; Cohen, Cheryl; Flasche, Stefan

2020

Practical considerations for measuring the effective reproductive number, Rt. (2020) Gostic, Katelyn M; McGough, Lauren; Baskerville, Edward B; Abbott, Sam; Joshi, Keya; Tedijanto, Christine; Kahn, Rebecca; Niehus, Rene; Hay, James A; De Salazar, Pablo M; Hellewell, Joel; Meakin, Sophie; Munday, James D; Bosse, Nikos I; Sherrat, Katharine; Thompson, Robin N; White, Laura F; Huisman, Jana S; Scire, Jérémie; Bonhoeffer, Sebastian; Stadler, Tanja; Wallinga, Jacco; Funk, Sebastian; Lipsitch, Marc; Cobey, Sarah

Robust detection of point mutations involved in multidrug-resistant Mycobacterium tuberculosis in the presence of co-occurrent resistance markers. (2020) Libiseller-Egger, Julian; Phelan, Jody; Campino, Susana; Mohareb, Fady; Clark, Taane G picture_as_pdf

2019

Bayesian inference of transmission chains using timing of symptoms, pathogen genomes and contact data. (2019) Campbell, Finlay; Cori, Anne; Ferguson, Neil; Jombart, Thibaut

Unsupervised extraction of epidemic syndromes from participatory influenza surveillance self-reported symptoms. (2019) Kalimeri, Kyriaki; Delfino, Matteo; Cattuto, Ciro; Perrotta, Daniela; Colizza, Vittoria; Guerrisi, Caroline; Turbelin, Clement; Duggan, Jim; Edmunds, John; Obi, Chinelo; Pebody, Richard; Franco, Ana O; Moreno, Yamir; Meloni, Sandro; Koppeschaar, Carl; Kjelsø, Charlotte; Mexia, Ricardo; Paolotti, Daniela

2018

A graph-based evidence synthesis approach to detecting outbreak clusters: An application to dog rabies. (2018) Cori, Anne; Nouvellet, Pierre; Garske, Tini; Bourhy, Hervé; Nakouné, Emmanuel; Jombart, Thibaut

2017

Quantifying the roles of host movement and vector dispersal in the transmission of vector-borne diseases of livestock. (2017) Sumner, Tom; Orton, Richard J; Green, Darren M; Kao, Rowland R; Gubbins, Simon

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads. (2017) Wick, Ryan R; Judd, Louise M; Gorrie, Claire L; Holt, Kathryn E

2014

Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data. (2014) Jombart, Thibaut; Cori, Anne; Didelot, Xavier; Cauchemez, Simon; Fraser, Christophe; Ferguson, Neil

Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling. (2014) Lindgreen, Stinus; Umu, Sinan Uğur; Lai, Alicia Sook-Wei; Eldai, Hisham; Liu, Wenting; McGimpsey, Stephanie; Wheeler, Nicole E; Biggs, Patrick J; Thomson, Nick R; Barquist, Lars; Poole, Anthony M; Gardner, Paul P