Year Authors/Creators Item Type Full Text

Article

Dynamic network approach for the modelling of genomic sub-complexes in multi-segmented viruses. (2018) AlShaikhahmed, Kinda; Leonov, German; Sung, Po-Yu; Bingham, Richard J; Twarock, Reidun; Roy, Polly

Cell-cycle-regulated control of VSG expression site silencing by histones and histone chaperones ASF1A and CAF-1b in Trypanosoma brucei. (2012) Alsford, Sam; Horn, David

cnvCapSeq: detecting copy number variation in long-range targeted resequencing data. (2014) Bellos, Evangelos; Kumar, Vikrant; Lin, Clarabelle; Maggi, Jordi; Phua, Zai Yang; Cheng, Ching-Yu; Cheung, Chui Ming Gemmy; Hibberd, Martin L; Wong, Tien Yin; Coin, Lachlan JM; Davila, Sonia

SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks. (2021) Csabai, Luca; Fazekas, Dávid; Kadlecsik, Tamás; Szalay-Bekő, Máté; Bohár, Balázs; Madgwick, Matthew; Módos, Dezső; Ölbei, Márton; Gul, Lejla; Sudhakar, Padhmanand; Kubisch, János; Oyeyemi, Oyebode James; Liska, Orsolya; Ari, Eszter; Hotzi, Bernadette; Billes, Viktor A; Molnár, Eszter; Földvári-Nagy, László; Csályi, Kitti; Demeter, Amanda; Pápai, Nóra; Koltai, Mihály; Varga, Máté; Lenti, Katalin; Farkas, Illés J; Türei, Dénes; Csermely, Péter; Vellai, Tibor; Korcsmáros, Tamás

Extending CATH: increasing coverage of the protein structure universe and linking structure with function. (2010) Cuff, Alison L; Sillitoe, Ian; Lewis, Tony; Clegg, Andrew B; Rentzsch, Robert; Furnham, Nicholas; Pellegrini-Calace, Marialuisa; Jones, David; Thornton, Janet; Orengo, Christine A

The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes. (2013) Furnham, Nicholas; Holliday, Gemma L; de Beer, Tjaart AP; Jacobsen, Julius OB; Pearson, William R; Thornton, Janet M

FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies. (2011) Furnham, Nicholas; Sillitoe, Ian; Holliday, Gemma L; Cuff, Alison L; Rahman, Syed A; Laskowski, Roman A; Orengo, Christine A; Thornton, Janet M

Deletion of a trypanosome telomere leads to loss of silencing and progressive loss of terminal DNA in the absence of cell cycle arrest. (2007) Glover, Lucy; Alsford, Sam; Beattie, Caroline; Horn, David

Microhomology-mediated deletion and gene conversion in African trypanosomes. (2010) Glover, Lucy; Jun, Junho; Horn, David

Sequence homology and microhomology dominate chromosomal double-strand break repair in African trypanosomes. (2008) Glover, Lucy; McCulloch, Richard; Horn, David

Extreme mutation bias and high AT content in Plasmodium falciparum. (2016) Hamilton, William L; Claessens, Antoine; Otto, Thomas D; Kekre, Mihir; Fairhurst, Rick M; Rayner, Julian C; Kwiatkowski, Dominic

SLING: a tool to search for linked genes in bacterial datasets. (2018) Horesh, Gal; Harms, Alexander; Fino, Cinzia; Parts, Leopold; Gerdes, Kenn; Heinz, Eva; Thomson, Nicholas Robert

Genomic mapping of cAMP receptor protein (CRPMt) in Mycobacterium tuberculosis: relation to transcriptional start sites and the role of CRPMt as a transcription factor. (2014) Kahramanoglou, C; Cortes, T; Matange, N; Hunt, DM; Visweswariah, SS; Young, DB; Buxton, RS

Large-scale evolutionary surveillance of the 2009 H1N1 influenza A virus using resequencing arrays. (2010) Lee, Charlie Wah Heng; Koh, Chee Wee; Chan, Yang Sun; Aw, Pauline Poh Kim; Loh, Kuan Hon; Han, Bing Ling; Thien, Pei Ling; Nai, Geraldine Yi Wen; Hibberd, Martin L; Wong, Christopher W; Sung, Wing-Kin

Co-dependence between trypanosome nuclear lamina components in nuclear stability and control of gene expression. (2016) Maishman, Luke; Obado, Samson O; Alsford, Sam; Bart, Jean-Mathieu; Chen, Wei-Ming; Ratushny, Alexander V; Navarro, Miguel; Horn, David; Aitchison, John D; Chait, Brian T; Rout, Michael P; Field, Mark C

Centromere-associated topoisomerase activity in bloodstream form Trypanosoma brucei. (2011) Obado, Samson O; Bot, Christopher; Echeverry, Maria C; Bayona, Julio C; Alvarez, Vanina E; Taylor, Martin C; Kelly, John M

Wellington: a novel method for the accurate identification of digital genomic footprints from DNase-seq data. (2013) Piper, Jason; Elze, Markus C; Cauchy, Pierre; Cockerill, Peter N; Bonifer, Constanze; Ott, Sascha

FLASH: a next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences. (2019) Quan, Jenai; Langelier, Charles; Kuchta, Alison; Batson, Joshua; Teyssier, Noam; Lyden, Amy; Caldera, Saharai; McGeever, Aaron; Dimitrov, Boris; King, Ryan; Wilheim, Jordan; Murphy, Maxwell; Ares, Lara Pesce; Travisano, Katherine A; Sit, Rene; Amato, Roberto; Mumbengegwi, Davis R; Smith, Jennifer L; Bennett, Adam; Gosling, Roly; Mourani, Peter M; Calfee, Carolyn S; Neff, Norma F; Chow, Eric D; Kim, Peter S; Greenhouse, Bryan; DeRisi, Joseph L; Crawford, Emily D

Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites. (2017) Ribeiro, António JM; Holliday, Gemma L; Furnham, Nicholas; Tyzack, Jonathan D; Ferris, Katherine; Thornton, Janet M

Translational regulation in mycobacteria and its implications for pathogenicity. (2018) Sawyer, Elizabeth B; Grabowska, Anna D; Cortes, Teresa

TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei. (2014) Shameer, Sanu; Logan-Klumpler, Flora J; Vinson, Florence; Cottret, Ludovic; Merlet, Benjamin; Achcar, Fiona; Boshart, Michael; Berriman, Matthew; Breitling, Rainer; Bringaud, Frédéric; Bütikofer, Peter; Cattanach, Amy M; Bannerman-Chukualim, Bridget; Creek, Darren J; Crouch, Kathryn; de Koning, Harry P; Denise, Hubert; Ebikeme, Charles; Fairlamb, Alan H; Ferguson, Michael AJ; Ginger, Michael L; Hertz-Fowler, Christiane; Kerkhoven, Eduard J; Mäser, Pascal; Michels, Paul AM; Nayak, Archana; Nes, David W; Nolan, Derek P; Olsen, Christian; Silva-Franco, Fatima; Smith, Terry K; Taylor, Martin C; Tielens, Aloysius GM; Urbaniak, Michael D; van Hellemond, Jaap J; Vincent, Isabel M; Wilkinson, Shane R; Wyllie, Susan; Opperdoes, Fred R; Barrett, Michael P; Jourdan, Fabien

New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures. (2012) Sillitoe, Ian; Cuff, Alison L; Dessailly, Benoit H; Dawson, Natalie L; Furnham, Nicholas; Lee, David; Lees, Jonathan G; Lewis, Tony E; Studer, Romain A; Rentzsch, Robert; Yeats, Corin; Thornton, Janet M; Orengo, Christine A

FunTree: advances in a resource for exploring and contextualising protein function evolution. (2015) Sillitoe, Ian; Furnham, Nicholas

CATH: comprehensive structural and functional annotations for genome sequences. (2014) Sillitoe, Ian; Lewis, Tony E; Cuff, Alison; Das, Sayoni; Ashford, Paul; Dawson, Natalie L; Furnham, Nicholas; Laskowski, Roman A; Lee, David; Lees, Jonathan G; Lehtinen, Sonja; Studer, Romain A; Thornton, Janet; Orengo, Christine A

Sequential packaging of RNA genomic segments during the assembly of Bluetongue virus. (2014) Sung, Po-Yu; Roy, Polly

A multidisciplinary approach to the identification of the protein-RNA connectome in double-stranded RNA virus capsids. (2023) Sung, Po-Yu; Zhou, Yiyang; Kao, C Cheng; Aburigh, Ali A; Routh, Andrew; Roy, Polly

MMBGX: a method for estimating expression at the isoform level and detecting differential splicing using whole-transcript Affymetrix arrays. (2009) Turro, Ernest; Lewin, Alex; Rose, Anna; Dallman, Margaret J; Richardson, Sylvia

LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets. (2012) Wilm, Andreas; Aw, Pauline Poh Kim; Bertrand, Denis; Yeo, Grace Hui Ting; Ong, Swee Hoe; Wong, Chang Hua; Khor, Chiea Chuen; Petric, Rosemary; Hibberd, Martin Lloyd; Nagarajan, Niranjan

BμG@Sbase--a microbial gene expression and comparative genomic database. (2011) Witney, Adam A; Waldron, Denise E; Brooks, Lucy A; Tyler, Richard H; Withers, Michael; Stoker, Neil G; Wren, Brendan W; Butcher, Philip D; Hinds, Jason