Items where the Publication is Microbial Genomics

Number of items: 9.
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  • Mobility of antimicrobial resistance across serovars and disease presentations in non-typhoidal Salmonella from animals and humans in Vietnam. (2022) Bloomfield, Samuel; Duong, Vu Thuy; Tuyen, Ha Thanh; Campbell, James I; Thomson, Nicholas R; Parkhill, Julian; Le Phuc, Hoang; Chau, Tran Thi Hong; Maskell, Duncan J; Perron, Gabriel G; Ngoc, Nguyen Minh; Vi, Lu Lan; Adriaenssens, Evelien M; Baker, Stephen; Mather, Alison E
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  • Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: an inter-laboratory study. (2020) Doyle, Ronan M; O'Sullivan, Denise M; Aller, Sean D; Bruchmann, Sebastian; Clark, Taane; Coello Pelegrin, Andreu; Cormican, Martin; Diez Benavente, Ernest; Ellington, Matthew J; McGrath, Elaine; Motro, Yair; Phuong Thuy Nguyen, Thi; Phelan, Jody; Shaw, Liam P; Stabler, Richard A; van Belkum, Alex; van Dorp, Lucy; Woodford, Neil; Moran-Gilad, Jacob; Huggett, Jim F; Harris, Kathryn A
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  • Genomic diversity of Escherichia coli isolates from backyard chickens and guinea fowl in the Gambia. (2020) Foster-Nyarko, Ebenezer; Alikhan, Nabil-Fareed; Ravi, Anuradha; Thomson, Nicholas M; Jarju, Sheikh; Kwambana-Adams, Brenda A; Secka, Arss; O'Grady, Justin; Antonio, Martin; Pallen, Mark John
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  • Evolution of a clade of Acinetobacter baumannii global clone 1, lineage 1 via acquisition of carbapenem- and aminoglycoside-resistance genes and dispersion of ISAba1. (2019) Hamidian, Mohammad; Hawkey, Jane; Wick, Ryan; Holt, Kathryn E; Hall, Ruth M
  • Declaring a tuberculosis outbreak over with genomic epidemiology. (2016) Hatherell, Hollie-Ann; Didelot, Xavier; Pollock, Sue L; Tang, Patrick; Crisan, Anamaria; Johnston, James C; Colijn, Caroline; Gardy, Jennifer L
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  • Transmission, distribution and drug resistance-conferring mutations of extensively drug-resistant tuberculosis in the Western Cape Province, South Africa. (2022) Oostvogels, Selien; Ley, Serej D; Heupink, Tim H; Dippenaar, Anzaan; Streicher, Elizabeth M; De Vos, Elise; Meehan, Conor J; Dheda, Keertan; Warren, Rob; Van Rie, Annelies
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  • Genome-wide analysis provides a deeper understanding of the population structure of the Salmonella enterica serotype Paratyphi B complex in Bangladesh. (2021) Rahman, Sadia Isfat Ara; Taylor-Brown, Alyce; Khanam, Farhana; Khan, Ashraful Islam; Horesh, Gal; Dyson, Zoe A; Begum, Yasmin Ara; Chowdhury, Emran Kabir; Qadri, Firdausi; Dougan, Gordon; Thomson, Nicholas R
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  • SARS-CoV-2 variants of concern dominate in Lahore, Pakistan in April 2021. (2021) Sarwar, Muhammad Bilal; Yasir, Muhammad; Alikhan, Nabil-Fareed; Afzal, Nadeem; de Oliveira Martins, Leonardo; Le Viet, Thanh; Trotter, Alexander J; Prosolek, Sophie J; Kay, Gemma L; Foster-Nyarko, Ebenezer; Rudder, Steven; Baker, David J; Muntaha, Sidra Tul; Roman, Muhammad; Webber, Mark A; Shafiq, Almina; Shabbir, Bilquis; Akram, Javed; Page, Andrew J; Jahan, Shah
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  • Putative novel cps loci in a large global collection of pneumococci. (2019) van Tonder, Andries J; Gladstone, Rebecca A; Lo, Stephanie W; Nahm, Moon H; du Plessis, Mignon; Cornick, Jennifer; Kwambana-Adams, Brenda; Madhi, Shabir A; Hawkins, Paulina A; Benisty, Rachel; Dagan, Ron; Everett, Dean; Antonio, Martin; Klugman, Keith P; von Gottberg, Anne; Breiman, Robert F; McGee, Lesley; Bentley, Stephen D; The Global Pneumococcal Sequencing Consortium