Items where the Publication is MICROBIAL GENOMICS

Year Authors/Creators Item Type Full Text

Article

An outbreak of a rare Shiga-toxin-producing Escherichia coli serotype (O117:H7) among men who have sex with men. (2018) Baker, Kate S; Dallman, Timothy J; Thomson, Nicholas R; Jenkins, Claire

70th Anniversary Collection for the Microbiology Society: Microbial Genomics. (2015) Bentley, Stephen; Thomson, Nicholas

Phylogenetic structure of European Salmonella Enteritidis outbreak correlates with national and international egg distribution network. (2016) Dallman, Tim; Inns, Thomas; Jombart, Thibaut; Ashton, Philip; Loman, Nicolas; Chatt, Carol; Messelhaeusser, Ute; Rabsch, Wolfgang; Simon, Sandra; Nikisins, Sergejs; Bernard, Helen; le Hello, Simon; Jourdan da-Silva, Nathalie; Kornschober, Christian; Mossong, Joel; Hawkey, Peter; de Pinna, Elizabeth; Grant, Kathie; Cleary, Paul

Genomic diversity and antimicrobial resistance among non-typhoidal Salmonella associated with human disease in The Gambia. (2022) Darboe, Saffiatou; Bradbury, Richard S; Phelan, Jody; Kanteh, Abdoulie; Muhammad, Abdul-Khalie; Worwui, Archibald; Yang, Shangxin; Nwakanma, Davis; Perez-Sepulveda, Blanca; Kariuki, Samuel; Kwambana-Adams, Brenda; Antonio, Martin

Genome-scale rates of evolutionary change in bacteria. (2016) Duchêne, Sebastian; Holt, Kathryn E; Weill, François-Xavier; Le Hello, Simon; Hawkey, Jane; Edwards, David J; Fourment, Mathieu; Holmes, Edward C

Evolution of carbapenem resistance in Acinetobacter baumannii during a prolonged infection. (2018) Hawkey, Jane; Ascher, David B; Judd, Louise M; Wick, Ryan R; Kostoulias, Xenia; Cleland, Heather; Spelman, Denis W; Padiglione, Alex; Peleg, Anton Y; Holt, Kathryn E

Caribbean multi-centre study of Klebsiella pneumoniae: whole-genome sequencing, antimicrobial resistance and virulence factors. (2019) Heinz, Eva; Brindle, Richard; Morgan-McCalla, Andrina; Peters, Keisha; Thomson, Nicholas R

Five decades of genome evolution in the globally distributed, extensively antibiotic-resistant Acinetobacter baumannii global clone 1. (2016) Holt, Kathryn; Kenyon, Johanna J; Hamidian, Mohammad; Schultz, Mark B; Pickard, Derek J; Dougan, Gordon; Hall, Ruth

An untypeable enterotoxigenic Escherichia coli represents one of the dominant types causing human disease. (2017) Iguchi, Atsushi; von Mentzer, Astrid; Kikuchi, Taisei; Thomson, Nicholas R

In silico serotyping of E. coli from short read data identifies limited novel O-loci but extensive diversity of O:H serotype combinations within and between pathogenic lineages. (2016) Ingle, Danielle J; Valcanis, Mary; Kuzevski, Alex; Tauschek, Marija; Inouye, Michael; Stinear, Tim; Levine, Myron M; Robins-Browne, Roy M; Holt, Kathryn E

Invasive atypical non-typhoidal Salmonella serovars in The Gambia. (2021) Kanteh, Abdoulie; Sesay, Abdul Karim; Alikhan, Nabil-Fareed; Ikumapayi, Usman Nurudeen; Salaudeen, Rasheed; Manneh, Jarra; Olatunji, Yekini; Page, Andrew J; Mackenzie, Grant

Genetic diversity, mobilisation and spread of the yersiniabactin-encoding mobile element ICEKp in Klebsiella pneumoniae populations. (2018) Lam, Margaret MC; Wick, Ryan R; Wyres, Kelly L; Gorrie, Claire L; Judd, Louise M; Jenney, Adam WJ; Brisse, Sylvain; Holt, Kathryn E

PlasmidTron: assembling the cause of phenotypes and genotypes from NGS data. (2018) Page, Andrew J; Wailan, Alexander; Shao, Yan; Judge, Kim; Dougan, Gordon; Klemm, Elizabeth J; Thomson, Nicholas R; Keane, Jacqueline A

Domestication of Campylobacter jejuni NCTC 11168. (2019) Pascoe, Ben; Williams, Lisa K; Calland, Jessica K; Meric, Guillaume; Hitchings, Matthew D; Dyer, Myles; Ryder, Joseph; Shaw, Sophie; Lopes, Bruno S; Chintoan-Uta, Cosmin; Allan, Elaine; Vidal, Ana; Fearnley, Catherine; Everest, Paul; Pachebat, Justin A; Cogan, Tristan A; Stevens, Mark P; Humphrey, Thomas J; Wilkinson, Thomas S; Cody, Alison J; Colles, Frances M; Jolley, Keith A; Maiden, Martin CJ; Strachan, Norval; Pearson, Bruce M; Linton, Dennis; Wren, Brendan W; Parkhill, Julian; Kelly, David J; van Vliet, Arnoud HM; Forbes, Ken J; Sheppard, Samuel K

Defining metrics for whole-genome sequence analysis of MRSA in clinical practice. (2020) Raven, Kathy E; Blane, Beth; Kumar, Narender; Leek, Danielle; Bragin, Eugene; Coll, Francesc; Parkhill, Julian; Peacock, Sharon J

Are commercial providers a viable option for clinical bacterial sequencing? (2018) Raven, Kathy; Blane, Beth; Churcher, Carol; Parkhill, Julian; Peacock, Sharon J

Whole-genome sequencing revealed concurrent outbreaks of shigellosis in the English Orthodox Jewish Community caused by multiple importations of Shigella sonnei from Israel. (2018) Rew, Vanessa; Mook, Piers; Trienekens, Suzan; Baker, Kate S; Dallman, Timothy J; Jenkins, Claire; Crook, Paul D; Thomson, Nicholas R

Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward. (2016) Schultz, Mark B; Pham Thanh, Duy; Tran Do Hoan, Nhu; Wick, Ryan R; Ingle, Danielle J; Hawkey, Jane; Edwards, David J; Kenyon, Johanna J; Phu Huong Lan, Nguyen; Campbell, James I; Thwaites, Guy; Thi Khanh Nhu, Nguyen; Hall, Ruth M; Fournier-Level, Alexandre; Baker, Stephen; Holt, Kathryn E

Bayesian reconstruction of Mycobacterium tuberculosis transmission networks in a high incidence area over two decades in Malawi reveals associated risk factors and genomic variants. (2020) Sobkowiak, Benjamin; Banda, Louis; Mzembe, Themba; Crampin, Amelia C; Glynn, Judith R; Clark, Taane G

Completing bacterial genome assemblies with multiplex MinION sequencing. (2017) Wick, Ryan R; Judd, Louise M; Gorrie, Claire L; Holt, Kathryn E

Identification of Acinetobacter baumannii loci for capsular polysaccharide (KL) and lipooligosaccharide outer core (OCL) synthesis in genome assemblies using curated reference databases compatible with Kaptive. (2020) Wyres, Kelly L; Cahill, Sarah M; Holt, Kathryn E; Hall, Ruth M; Kenyon, Johanna J