Items where the Publication is BMC genomics
Number of items: 36.
2019
Correction to: Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture. (2019)
Nimmo, Camus; Shaw, Liam P; Doyle, Ronan; Williams, Rachel; Brien, Kayleen; Burgess, Carrie; Breuer, Judith; Balloux, Francois; Pym, Alexander S
Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance. (2019)
Oppong, Yaa EA; Phelan, Jody; Perdigão, João; Machado, Diana; Miranda, Anabela; Portugal, Isabel; Viveiros, Miguel; Clark, Taane G; Hibberd, Martin L
2018
Changes in H3K27ac following lipopolysaccharide stimulation of nasopharyngeal epithelial cells. (2018)
Borghini, Lisa; Hibberd, Martin; Davila, Sonia
Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data. (2018)
Sobkowiak, Benjamin; Glynn, Judith R; Houben, Rein MGJ; Mallard, Kim; Phelan, Jody E; Guerra-Assunção, José Afonso; Banda, Louis; Mzembe, Themba; Viveiros, Miguel; McNerney, Ruth; Parkhill, Julian; Crampin, Amelia C; Clark, Taane G
2017
Hierarchical genomic analysis of carried and invasive serogroup A Neisseria meningitidis during the 2011 epidemic in Chad. (2017)
Diallo, Kanny; Gamougam, Kadija; Daugla, Doumagoum M; Harrison, Odile B; Bray, James E; Caugant, Dominique A; Lucidarme, Jay; Trotter, Caroline L; Hassan-King, Musa; Stuart, James M; Manigart, Olivier; Greenwood, Brian M; Maiden, Martin CJ
A universal genome sequencing method for rotavirus A from human fecal samples which identifies segment reassortment and multi-genotype mixed infection. (2017)
Dung, Tran Thi Ngoc; Duy, Pham Thanh; Sessions, October M; Sangumathi, Uma K; Phat, Voong Vinh; Tam, Pham Thi Thanh; To, Nguyen Thi Nguyen; Phuc, Tran My; Hong Chau, Tran Thi; Chau, Nguyen Ngoc Minh; Minh, Ngoc Nguyen; Thwaites, Guy E; Rabaa, Maia A; Baker, Stephen
Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure. (2017)
Fookes, Maria C; Hadfield, James; Harris, Simon; Parmar, Surendra; Unemo, Magnus; Jensen, Jørgen S; Thomson, Nicholas R
Evolution of mobile genetic element composition in an epidemic methicillin-resistant Staphylococcus aureus: temporal changes correlated with frequent loss and gain events. (2017)
Jamrozy, Dorota; Coll, Francesc; Mather, Alison E; Harris, Simon R; Harrison, Ewan M; MacGowan, Alasdair; Karas, Andreas; Elston, Tony; Estée Török, M; Parkhill, Julian; Peacock, Sharon J
A multiple genome analysis of Mycobacterium tuberculosis reveals specific novel genes and mutations associated with pyrazinamide resistance. (2017)
Sheen, Patricia; Requena, David; Gushiken, Eduardo; Gilman, Robert H; Antiparra, Ricardo; Lucero, Bryan; Lizárraga, Pilar; Cieza, Basilio; Roncal, Elisa; Grandjean, Louis; Pain, Arnab; McNerney, Ruth; Clark, Taane G; Moore, David; Zimic, Mirko
Single-virion sequencing of lamivudine-treated HBV populations reveal population evolution dynamics and demographic history. (2017)
Zhu, Yuan O; Aw, Pauline PK; de Sessions, Paola Florez; Hong, Shuzhen; See, Lee Xian; Hong, Lewis Z; Wilm, Andreas; Li, Chen Hao; Hue, Stephane; Lim, Seng Gee; Nagarajan, Niranjan; Burkholder, William F; Hibberd, Martin
2016
Genome-wide association study using family-based cohorts identifies the WLS and CCDC170/ESR1 loci as associated with bone mineral density. (2016)
Mullin, Benjamin H; Walsh, John P; Zheng, Hou-Feng; Brown, Suzanne J; Surdulescu, Gabriela L; Curtis, Charles; Breen, Gerome; Dudbridge, Frank; Richards, J Brent; Spector, Tim D; Wilson, Scott G
Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages. (2016)
Phelan, Jody E; Coll, Francesc; Bergval, Indra; Anthony, Richard M; Warren, Rob; Sampson, Samantha L; Gey van Pittius, Nicolaas C; Glynn, Judith R; Crampin, Amelia C; Alves, Adriana; Bessa, Theolis Barbosa; Campino, Susana; Dheda, Keertan; Grandjean, Louis; Hasan, Rumina; Hasan, Zahra; Miranda, Anabela; Moore, David; Panaiotov, Stefan; Perdigao, Joao; Portugal, Isabel; Sheen, Patricia; de Oliveira Sousa, Erivelton; Streicher, Elizabeth M; van Helden, Paul D; Viveiros, Miguel; Hibberd, Martin L; Pain, Arnab; McNerney, Ruth; Clark, Taane G
2015
Comparison of genomic signatures of selection on Plasmodium falciparum between different regions of a country with high malaria endemicity. (2015)
Duffy, Craig W; Assefa, Samuel A; Abugri, James; Amoako, Nicholas; Owusu-Agyei, Seth; Anyorigiya, Thomas; MacInnis, Bronwyn; Kwiatkowski, Dominic P; Conway, David J; Awandare, Gordon A
2014
Unraveling Mycobacterium tuberculosis genomic diversity and evolution in Lisbon, Portugal, a highly drug resistant setting. (2014)
Perdigão, João; Silva, Hugo; Machado, Diana; Macedo, Rita; Maltez, Fernando; Silva, Carla; Jordao, Luisa; Couto, Isabel; Mallard, Kim; Coll, Francesc; Hill-Cawthorne, Grant A; McNerney, Ruth; Pain, Arnab; Clark, Taane G; Viveiros, Miguel; Portugal, Isabel
2013
Transcriptional adaptation of pneumococci and human pharyngeal cells in the presence of a virus infection. (2013)
Kimaro Mlacha, Sheila Z; Peret, Teresa CT; Kumar, Nikhil; Romero-Steiner, Sandra; Dunning Hotopp, Julie C; Ishmael, Nadeeza; Grinblat-Huse, Valerie; Riley, David R; Erdman, Dean D; Carlone, George M; Sampson, Jacquelyn; Scott, J Anthony G; Tettelin, Hervé
Phenotypic, genomic, and transcriptional characterization of Streptococcus pneumoniae interacting with human pharyngeal cells. (2013)
Kimaro Mlacha, Sheila Z; Romero-Steiner, Sandra; Hotopp, Julie C Dunning; Kumar, Nikhil; Ishmael, Nadeeza; Riley, David R; Farooq, Umar; Creasy, Todd H; Tallon, Luke J; Liu, Xinyue; Goldsmith, Cynthia S; Sampson, Jacquelyn; Carlone, George M; Hollingshead, Susan K; Scott, J Anthony G; Tettelin, Hervé
Genomic distribution of SINEs in Entamoeba histolytica strains: implication for genotyping. (2013)
Kumari, Vandana; Iyer, Lakshmi Rani; Roy, Riti; Bhargava, Varsha; Panda, Suchita; Paul, Jaishree; Verweij, Jaco J; Clark, C Graham; Bhattacharya, Alok; Bhattacharya, Sudha
A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data. (2013)
Sepúlveda, Nuno; Campino, Susana G; Assefa, Samuel A; Sutherland, Colin J; Pain, Arnab; Clark, Taane G
2012
Comparative phylogenomics of Streptococcus pneumoniae isolated from invasive disease and nasopharyngeal carriage from West Africans. (2012)
Donkor, Eric S; Stabler, Richard A; Hinds, Jason; Adegbola, Richard A; Antonio, Martin; Wren, Brendan W
Centromere-associated repeat arrays on Trypanosoma brucei chromosomes are much more extensive than predicted. (2012)
Echeverry, Maria C; Bot, Christopher; Obado, Samson O; Taylor, Martin C; Kelly, John M
Comparative genomic analysis of human infective Trypanosoma cruzi lineages with the bat-restricted subspecies T. cruzi marinkellei. (2012)
Franzén, Oscar; Talavera-López, Carlos; Ochaya, Stephen; Butler, Claire E; Messenger, Louisa A; Lewis, Michael D; Llewellyn, Martin S; Marinkelle, Cornelis J; Tyler, Kevin M; Miles, Michael A; Andersson, Björn
2010
Bioinformatic analysis of Entamoeba histolytica SINE1 elements. (2010)
Huntley, Derek M; Pandis, Ioannis; Butcher, Sarah A; Ackers, John P
Simple sequence repeats in Helicobacter canadensis and their role in phase variable expression and C-terminal sequence switching. (2010)
Snyder, Lori AS; Loman, Nicholas J; Linton, James D; Langdon, Rebecca R; Weinstock, George M; Wren, Brendan W; Pallen, Mark J
2009
Gene copy number variation throughout the Plasmodium falciparum genome. (2009)
Cheeseman, Ian H; Gomez-Escobar, Natalia; Carret, Celine K; Ivens, Alasdair; Stewart, Lindsay B; Tetteh, Kevin KA; Conway, David J
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Horizontal gene transfer between Wolbachia and the mosquito Aedes aegypti. (2009)
Klasson, Lisa; Kambris, Zakaria; Cook, Peter E; Walker, Thomas; Sinkins, Steven P
Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain. (2009)
Seth-Smith, Helena MB; Harris, Simon R; Persson, Kenneth; Marsh, Pete; Barron, Andrew; Bignell, Alexandra; Bjartling, Carina; Clark, Louise; Cutcliffe, Lesley T; Lambden, Paul R; Lennard, Nicola; Lockey, Sarah J; Quail, Michael A; Salim, Omar; Skilton, Rachel J; Wang, Yibing; Holland, Martin J; Parkhill, Julian; Thomson, Nicholas R; Clarke, Ian N
Putative DNA G-quadruplex formation within the promoters of Plasmodium falciparum var genes. (2009)
Smargiasso, Nicolas; Gabelica, Valérie; Damblon, Christian; Rosu, Frédéric; De Pauw, Edwin; Teulade-Fichou, Marie-Paule; Rowe, J Alexandra; Claessens, Antoine
Steps toward broad-spectrum therapeutics: discovering virulence-associated genes present in diverse human pathogens. (2009)
Stubben, Chris J; Duffield, Melanie L; Cooper, Ian A; Ford, Donna C; Gans, Jason D; Karlyshev, Andrey V; Lingard, Bryan; Oyston, Petra CF; de Rochefort, Anna; Song, Jian; Wren, Brendan W; Titball, Rick W; Wolinsky, Murray
2007
Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets. (2007)
Chelala, Claude; Hahn, Stephan A; Whiteman, Hannah J; Barry, Sayka; Hariharan, Deepak; Radon, Tomasz P; Lemoine, Nicholas R; Crnogorac-Jurcevic, Tatjana
Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence. (2007)
Gundogdu, Ozan; Bentley, Stephen D; Holden, Matt T; Parkhill, Julian; Dorrell, Nick; Wren, Brendan W
ATP-binding cassette systems in Burkholderia pseudomallei and Burkholderia mallei. (2007)
Harland, David N; Dassa, Elie; Titball, Richard W; Brown, Katherine A; Atkins, Helen S
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