LSHTM Organisational Structure (57264)

Faculty of Infectious and Tropical Diseases (18516)

Department of Infection Biology (5552)

Dept of Immunology and Infection (-2019) (972)

Dept of Pathogen Molecular Biology (-2019) (1192) Month Authors/Creators Item Type Full Text

December 2022

Deep learning-derived cardiovascular age shares a genetic basis with other cardiac phenotypes. (2022) Libiseller-Egger, Julian; Phelan, Jody E; Attia, Zachi I; Benavente, Ernest Diez; Campino, Susana; Friedman, Paul A; Lopez-Jimenez, Francisco; Leon, David A; Clark, Taane G

TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis. (2022) Verboven, Lennert; Phelan, Jody; Heupink, Tim H; Van Rie, Annelies

Extracellular Vesicles from Campylobacter jejuni CDT-Treated Caco-2 Cells Inhibit Proliferation of Tumour Intestinal Caco-2 Cells and Myeloid U937 Cells: Detailing the Global Cell Response for Potential Application in Anti-Tumour Strategies. (2022) Montanari, Mariele; Guescini, Michele; Gundogdu, Ozan; Luchetti, Francesca; Lanuti, Paola; Ciacci, Caterina; Burattini, Sabrina; Campana, Raffaella; Ortolani, Claudio; Papa, Stefano; Canonico, Barbara

A choline-releasing glycerophosphodiesterase essential for phosphatidylcholine biosynthesis and blood stage development in the malaria parasite. (2022) Ramaprasad, Abhinay; Burda, Paul-Christian; Calvani, Enrica; Sait, Aaron J; Palma-Duran, Susana Alejandra; Withers-Martinez, Chrislaine; Hackett, Fiona; Macrae, James; Collinson, Lucy; Gilberger, Tim Wolf; Blackman, Michael J

Characteristics of Staphylococcus aureus Isolated from Patients in Busia County Referral Hospital, Kenya. (2022) Obanda, Benear Apollo; Cook, Elizabeth AJ; Fèvre, Eric M; Bebora, Lilly; Ogara, William; Wang, Shu-Hua; Gebreyes, Wondwossen; Ngetich, Ronald; Wandede, Dolphine; Muyodi, Johnstone; Blane, Beth; Coll, Francesc; Harrison, Ewan M; Peacock, Sharon J; Gitao, George C

Geographical classification of malaria parasites through applying machine learning to whole genome sequence data. (2022) Deelder, Wouter; Manko, Emilia; Phelan, Jody E; Campino, Susana; Palla, Luigi; Clark, Taane G

A next generation targeted amplicon sequencing method to screen for insecticide resistance mutations in Aedes aegypti populations reveals a rdl mutation in mosquitoes from Cabo Verde. (2022) Collins, Emma L; Phelan, Jody E; Hubner, Magdalena; Spadar, Anton; Campos, Monica; Ward, Daniel; Acford-Palmer, Holly; Gomes, Ana Rita; Silva, Keily; Ferrero Gomez, Lara; Clark, Taane G; Campino, Susana

Paratype: a genotyping tool for Salmonella Paratyphi A reveals its global genomic diversity. (2022) Tanmoy, Arif M; Hooda, Yogesh; Sajib, Mohammad SI; da Silva, Kesia E; Iqbal, Junaid; Qamar, Farah N; Luby, Stephen P; Dougan, Gordon; Dyson, Zoe A; Baker, Stephen; Garrett, Denise O; Andrews, Jason R; Saha, Samir K; Saha, Senjuti

November 2022

Plasmodium falciparum Sexual Commitment Rate Variation among Clinical Isolates and Diverse Laboratory-Adapted Lines. (2022) Stewart, Lindsay B; Freville, Aline; Voss, Till S; Baker, David A; Awandare, Gordon A; Conway, David J

Entomological impact of mass administration of ivermectin and dihydroartemisinin-piperaquine in The Gambia: a cluster-randomized controlled trial. (2022) Soumare, Harouna M; Dabira, Edgard Diniba; Camara, Muhammed M; Jadama, Lamin; Gaye, Pa Modou; Kanteh, Sainey; Jawara, Ebrima A; Njie, Amie Kolleh; Sanneh, Fatou; Ndiath, Mamadou Ousman; Lindsay, Steven W; Conteh, Bakary; Ceesay, Sainey; Mohammed, Nuredin; Ooko, Michael; Bradley, John; Drakeley, Chris; Erhart, Annette; Bousema, Teun; D'Alessandro, Umberto

Gravidity and malaria trends interact to modify P. falciparum densities and detectability in pregnancy: a 3-year prospective multi-site observational study. (2022) Matambisso, Glória; Brokhattingen, Nanna; Maculuve, Sónia; Cisteró, Pau; Mbeve, Henriques; Escoda, Anna; Miguel, Judice; Buetas, Elena; de Jong, Ianthe; Cuna, Boaventura; Melembe, Cardoso; Ndimande, Nelo; Porras, Gemma; Chen, Haily; Tetteh, Kevin KA; Drakeley, Chris; Gamain, Benoit; Chitnis, Chetan; Chauhan, Virander; Quintó, Llorenç; Galatas, Beatriz; Macete, Eusébio; Mayor, Alfredo

Non-lactose fermenting Escherichia coli: Following in the footsteps of lactose fermenting E. coli high-risk clones. (2022) Mazumder, Razib; Hussain, Arif; Phelan, Jody E; Campino, Susana; Haider, SM Arefeen; Mahmud, Araf; Ahmed, Dilruba; Asadulghani, Md; Clark, Taane G; Mondal, Dinesh

Characterizing the Impact of Primer-Template Mismatches on Recombinase Polymerase Amplification. (2022) Higgins, Matthew; Stringer, Oliver W; Ward, Daniel; Andrews, Jennifer M; Forrest, Matthew S; Campino, Susana; Clark, Taane G

Mechanochemical tuning of a kinesin motor essential for malaria parasite transmission. (2022) Liu, Tianyang; Shilliday, Fiona; Cook, Alexander D; Zeeshan, Mohammad; Brady, Declan; Tewari, Rita; Sutherland, Colin J; Roberts, Anthony J; Moores, Carolyn A

Parasite clearance dynamics in children hospitalised with severe malaria in the Ho Teaching Hospital, Volta Region, Ghana. (2022) Paris, Laura; Tackie, Richmond G; Beshir, Khalid B; Tampuori, John; Awandare, Gordon A; Binka, Fred N; Urban, Britta C; Dinko, Bismarck; Sutherland, Colin J

A Shigella sonnei clone with extensive drug resistance associated with waterborne outbreaks in China. (2022) Qiu, Shaofu; Liu, Kangkang; Yang, Chaojie; Xiang, Ying; Min, Kaiyuan; Zhu, Kunpeng; Liu, Hongbo; Du, Xinying; Yang, Mingjuan; Wang, Ligui; Sun, Yong; Zhou, Haijian; Mahe, Muti; Zhao, Jiayong; Li, Shijun; Yu, Deshan; Hawkey, Jane; Holt, Kathryn E; Baker, Stephen; Yang, Juntao; Xu, Xuebin; Song, Hongbin

October 2022

In silico investigation of the genus Campylobacter type VI secretion system reveals genetic diversity in organization and putative effectors. (2022) Robinson, Luca; Liaw, Janie; Omole, Zahra; Corcionivoschi, Nicolae; Hachani, Abderrahman; Gundogdu, Ozan

Assessing seroprevalence and associated risk factors for multiple infectious diseases in Sabah, Malaysia using serological multiplex bead assays. (2022) Chan, YuYen L; Patterson, Catriona L; Priest, Jeffrey W; Stresman, Gillian; William, Timothy; Chua, Tock H; Tetteh, Kevin; Lammie, Patrick; Drakeley, Chris; Fornace, Kimberly M

Role of NS2 specific RNA binding and phosphorylation in liquid-liquid phase separation and virus assembly. (2022) Rahman, Shah Kamranur; Ampah, Khamal Kwesi; Roy, Polly

Diagnostic accuracy and limit of detection of ten malaria parasite lactate dehydrogenase-based rapid tests for Plasmodium knowlesi and P. falciparum. (2022) Tan, Angelica F; Sakam, Sitti Saimah Binti; Rajahram, Giri S; William, Timothy; Abd Rachman Isnadi, Mohammad Faruq; Daim, Sylvia; Barber, Bridget E; Kho, Steven; Sutherland, Colin J; Anstey, Nicholas M; Yerlikaya, Seda; van Schalkwyk, Donelly A; Grigg, Matthew J

East Africa International Center of Excellence for Malaria Research: Summary of Key Research Findings. (2022) Nankabirwa, Joaniter I; Rek, John; Arinaitwe, Emmanuel; Namuganga, Jane Frances; Nsobya, Sam L; Asua, Victor; Mawejje, Henry D; Epstein, Adrienne; Greenhouse, Bryan; Rodriguez-Barraquer, Isabel; Briggs, Jessica; Krezanoski, Paul J; Rosenthal, Philip J; Conrad, Melissa; Smith, David; Staedke, Sarah G; Drakeley, Chris; Bousema, Teun; Andolina, Chiara; Donnelly, Martin J; Kamya, Moses R; Dorsey, Grant

Comparing in vivo bioluminescence imaging and the Multi-Cruzi immunoassay platform to develop improved Chagas disease diagnostic procedures and biomarkers for monitoring parasitological cure. (2022) Francisco, Amanda Fortes; Saade, Ursula; Jayawardhana, Shiromani; Pottel, Hans; Scandale, Ivan; Chatelain, Eric; Liehl, Peter; Kelly, John M; Zrein, Maan

Epidemiology of SARS-CoV-2 infection among staff and students in a cohort of English primary and secondary schools during 2020-2021. (2022) Hargreaves, James R; Langan, Sinéad M; Oswald, William E; Halliday, Katherine E; Sturgess, Joanna; Phelan, Jody; Nguipdop-Djomo, Patrick; Ford, Benjamin; Allen, Elizabeth; Sundaram, Neisha; Ireland, Georgina; Poh, John; Ijaz, Samreen; Diamond, Ian; Rourke, Emma; Dawe, Fiona; Judd, Alison; Warren-Gash, Charlotte; Clark, Taane G; Glynn, Judith R; Edmunds, W John; Bonell, Chris; Mangtani, Punam; Ladhani, Shamez N; COVID-19 Schools Infection Survey Study Group

Advances in Basic and Translational Research as Part of the Center for the Study of Complex Malaria in India. (2022) Carlton, Jane M; Eapen, Alex; Kessler, Anne; Anvikar, Anupkumar R; Hoffmann, Angelika; Singh, Om P; Sullivan, Steven A; Albert, Sandra; Sahu, Praveen K; Mohanty, Sanjib; Wassmer, Samuel C

Genomic population structures of microbial pathogens. (2022) Holt, Kathryn E; Aanensen, David M; Achtman, Mark

Cation ATPase (ATP4) Orthologue Replacement in the Malaria Parasite Plasmodium knowlesi Reveals Species-Specific Responses to ATP4-Targeting Drugs. (2022) Mohring, Franziska; van Schalkwyk, Donelly A; Henrici, Ryan C; Blasco, Benjamin; Leroy, Didier; Sutherland, Colin J; Moon, Robert W

Acinetobacter nosocomialis Causes as Severe Disease as Acinetobacter baumannii in Northeast Thailand: Underestimated Role of A. nosocomialis in Infection. (2022) Nithichanon, Arnone; Kewcharoenwong, Chidchamai; Da-Oh, Hudadini; Surajinda, Sirithorn; Khongmee, Aranya; Koosakunwat, Surathinee; Wren, Brendan W; Stabler, Richard A; Brown, Jeremy S; Lertmemongkolchai, Ganjana

September 2022

Further insight into the genetic diversity of Entamoeba coli and Entamoeba hartmanni. (2022) Stensvold, Christen Rune; Ascuña-Durand, Kasandra; Chihi, Amal; Belkessa, Salem; Kurt, Özgür; El-Badry, Ayman; van der Giezen, Mark; Clark, C Graham

Analysis of pit latrine microbiota reveals depth-related variation in composition, and key parameters and taxa associated with latrine fill-up rate. (2022) Ijaz, Umer Zeeshan; Gundogdu, Ozan; Keating, Ciara; van Eekert, Miriam; Gibson, Walter; Parkhill, Julian; Abilahi, Faraji; Liseki, Benard; Nguyen, Viet-Anh; Sudgen, Steven; Quince, Christopher; Ensink, Jeroen HJ; Torondel, Belen; Walker, Alan W

Survival of Campylobacter jejuni 11168H in Acanthamoebae castellanii Provides Mechanistic Insight into Host Pathogen Interactions. (2022) Nasher, Fauzy; Lehri, Burhan; Horney, Megan F; Stabler, Richard A; Wren, Brendan W

Nitroimidazopyrazinones with Oral Activity against Tuberculosis and Chagas Disease in Mouse Models of Infection. (2022) Ang, Chee Wei; Lee, Brendon M; Jackson, Colin J; Wang, Yuehong; Franzblau, Scott G; Francisco, Amanda F; Kelly, John M; Bernhardt, Paul V; Tan, Lendl; West, Nicholas P; Sykes, Melissa L; Hinton, Alexandra O; Bolisetti, Raghu; Avery, Vicky M; Cooper, Matthew A; Blaskovich, Mark AT picture_as_pdf

Making microbial genomics work for clinical and public health microbiology. (2022) Azarian, Taj; Sherry, Norelle L; Baker, Kate; Holt, Kathryn E; Okeke, Iruka N

The role of cholesterol in invasion and growth of malaria parasites. (2022) Maier, Alexander G; van Ooij, Christiaan

Safety of single-dose primaquine as a Plasmodium falciparum gametocytocide: a systematic review and meta-analysis of individual patient data. (2022) Stepniewska, Kasia; Allen, Elizabeth N; Humphreys, Georgina S; Poirot, Eugenie; Craig, Elaine; Kennon, Kalynn; Yilma, Daniel; Bousema, Teun; Guerin, Philippe J; White, Nicholas J; Price, Ric N; Raman, Jaishree; Martensson, Andreas; Mwaiswelo, Richard O; Bancone, Germane; Bastiaens, Guido JH; Bjorkman, Anders; Brown, Joelle M; D'Alessandro, Umberto; Dicko, Alassane A; El-Sayed, Badria; Elzaki, Salah-Eldin; Eziefula, Alice C; Gonçalves, Bronner P; Hamid, Muzamil Mahdi Abdel; Kaneko, Akira; Kariuki, Simon; Khan, Wasif; Kwambai, Titus K; Ley, Benedikt; Ngasala, Billy E; Nosten, Francois; Okebe, Joseph; Samuels, Aaron M; Smit, Menno R; Stone, Will JR; Sutanto, Inge; Ter Kuile, Feiko; Tine, Roger C; Tiono, Alfred B; Drakeley, Chris J; Gosling, Roly; Stergachis, Andy; Barnes, Karen I; Chen, Ingrid

The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance. (2022) Tegally, Houriiyah; San, James E; Cotten, Matthew; Moir, Monika; Tegomoh, Bryan; Mboowa, Gerald; Martin, Darren P; Baxter, Cheryl; Lambisia, Arnold W; Diallo, Amadou; Amoako, Daniel G; Diagne, Moussa M; Sisay, Abay; Zekri, Abdel-Rahman N; Gueye, Abdou Salam; Sangare, Abdoul K; Ouedraogo, Abdoul-Salam; Sow, Abdourahmane; Musa, Abdualmoniem O; Sesay, Abdul K; Abias, Abe G; Elzagheid, Adam I; Lagare, Adamou; Kemi, Adedotun-Sulaiman; Abar, Aden Elmi; Johnson, Adeniji A; Fowotade, Adeola; Oluwapelumi, Adeyemi O; Amuri, Adrienne A; Juru, Agnes; Kandeil, Ahmed; Mostafa, Ahmed; Rebai, Ahmed; Sayed, Ahmed; Kazeem, Akano; Balde, Aladje; Christoffels, Alan; Trotter, Alexander J; Campbell, Allan; Keita, Alpha K; Kone, Amadou; Bouzid, Amal; Souissi, Amal; Agweyu, Ambrose; Naguib, Amel; Gutierrez, Ana V; Nkeshimana, Anatole; Page, Andrew J; Yadouleton, Anges; Vinze, Anika; Happi, Anise N; Chouikha, Anissa; Iranzadeh, Arash; Maharaj, Arisha; Batchi-Bouyou, Armel L; Ismail, Arshad; Sylverken, Augustina A; Goba, Augustine; Femi, Ayoade; Sijuwola, Ayotunde E; Marycelin, Baba; Salako, Babatunde L; Oderinde, Bamidele S; Bolajoko, Bankole; Diarra, Bassirou; Herring, Belinda L; Tsofa, Benjamin; Lekana-Douki, Bernard; Mvula, Bernard; Njanpop-Lafourcade, Berthe-Marie; Marondera, Blessing T; Khaireh, Bouh Abdi; Kouriba, Bourema; Adu, Bright; Pool, Brigitte; McInnis, Bronwyn; Brook, Cara; Williamson, Carolyn; Nduwimana, Cassien; Anscombe, Catherine; Pratt, Catherine B; Scheepers, Cathrine; Akoua-Koffi, Chantal G; Agoti, Charles N; Mapanguy, Chastel M; Loucoubar, Cheikh; Onwuamah, Chika K; Ihekweazu, Chikwe; Malaka, Christian N; Peyrefitte, Christophe; Grace, Chukwa; Omoruyi, Chukwuma E; Rafaï, Clotaire D; Morang'a, Collins M; Erameh, Cyril; Lule, Daniel B; Bridges, Daniel J; Mukadi-Bamuleka, Daniel; Park, Danny; Rasmussen, David A; Baker, David; Nokes, David J; Ssemwanga, Deogratius; Tshiabuila, Derek; Amuzu, Dominic SY; Goedhals, Dominique; Grant, Donald S; Omuoyo, Donwilliams O; Maruapula, Dorcas; Wanjohi, Dorcas W; Foster-Nyarko, Ebenezer; Lusamaki, Eddy K; Simulundu, Edgar; Ong'era, Edidah M; Ngabana, Edith N; Abworo, Edward O; Otieno, Edward; Shumba, Edwin; Barasa, Edwine; Ahmed, El Bara; Ahmed, Elhadi A; Lokilo, Emmanuel; Mukantwari, Enatha; Philomena, Eromon; Belarbi, Essia; Simon-Loriere, Etienne; Anoh, Etilé A; Manuel, Eusebio; Leendertz, Fabian; Taweh, Fahn M; Wasfi, Fares; Abdelmoula, Fatma; Takawira, Faustinos T; Derrar, Fawzi; Ajogbasile, Fehintola V; Treurnicht, Florette; Onikepe, Folarin; Ntoumi, Francine; Muyembe, Francisca M; Ragomzingba, Frank EZ; Dratibi, Fred A; Iyanu, Fred-Akintunwa; Mbunsu, Gabriel K; Thilliez, Gaetan; Kay, Gemma L; Akpede, George O; van Zyl, Gert U; Awandare, Gordon A; Kpeli, Grace S; Schubert, Grit; Maphalala, Gugu P; Ranaivoson, Hafaliana C; Omunakwe, Hannah E; Onywera, Harris; Abe, Haruka; Karray, Hela; Nansumba, Hellen; Triki, Henda; Kadjo, Herve Albéric Adje; Elgahzaly, Hesham; Gumbo, Hlanai; Mathieu, Hota; Kavunga-Membo, Hugo; Smeti, Ibtihel; Olawoye, Idowu B; Adetifa, Ifedayo MO; Odia, Ikponmwosa; Ben Boubaker, Ilhem Boutiba; Muhammad, Iluoreh Ahmed; Ssewanyana, Isaac; Wurie, Isatta; Konstantinus, Iyaloo S; Halatoko, Jacqueline Wemboo Afiwa; Ayei, James; Sonoo, Janaki; Makangara, Jean-Claude C; Tamfum, Jean-Jacques M; Heraud, Jean-Michel; Shaffer, Jeffrey G; Giandhari, Jennifer; Musyoki, Jennifer; Nkurunziza, Jerome; Uwanibe, Jessica N; Bhiman, Jinal N; Yasuda, Jiro; Morais, Joana; Kiconco, Jocelyn; Sandi, John D; Huddleston, John; Odoom, John K; Morobe, John M; Gyapong, John O; Kayiwa, John T; Okolie, Johnson C; Xavier, Joicymara S; Gyamfi, Jones; Wamala, Joseph F; Bonney, Joseph HK; Nyandwi, Joseph; Everatt, Josie; Nakaseegu, Joweria; Ngoi, Joyce M; Namulondo, Joyce; Oguzie, Judith U; Andeko, Julia C; Lutwama, Julius J; Mogga, Juma JH; O'Grady, Justin; Siddle, Katherine J; Victoir, Kathleen; Adeyemi, Kayode T; Tumedi, Kefentse A; Carvalho, Kevin S; Mohammed, Khadija Said; Dellagi, Koussay; Musonda, Kunda G; Duedu, Kwabena O; Fki-Berrajah, Lamia; Singh, Lavanya; Kepler, Lenora M; Biscornet, Leon; de Oliveira Martins, Leonardo; Chabuka, Lucious; Olubayo, Luicer; Ojok, Lul Deng; Deng, Lul Lojok; Ochola-Oyier, Lynette I; Tyers, Lynn; Mine, Madisa; Ramuth, Magalutcheemee; Mastouri, Maha; ElHefnawi, Mahmoud; Mbanne, Maimouna; Matsheka, Maitshwarelo I; Kebabonye, Malebogo; Diop, Mamadou; Momoh, Mambu; Lima Mendonça, Maria da Luz; Venter, Marietjie; Paye, Marietou F; Faye, Martin; Nyaga, Martin M; Mareka, Mathabo; Damaris, Matoke-Muhia; Mburu, Maureen W; Mpina, Maximillian G; Owusu, Michael; Wiley, Michael R; Tatfeng, Mirabeau Y; Ayekaba, Mitoha Ondo'o; Abouelhoda, Mohamed; Beloufa, Mohamed Amine; Seadawy, Mohamed G; Khalifa, Mohamed K; Matobo, Mooko Marethabile; Kane, Mouhamed; Salou, Mounerou; Mbulawa, Mphaphi B; Mwenda, Mulenga; Allam, Mushal; Phan, My VT; Abid, Nabil; Rujeni, Nadine; Abuzaid, Nadir; Ismael, Nalia; Elguindy, Nancy; Top, Ndeye Marieme; Dia, Ndongo; Mabunda, Nédio; Hsiao, Nei-Yuan; Silochi, Nelson Boricó; Francisco, Ngiambudulu M; Saasa, Ngonda; Bbosa, Nicholas; Murunga, Nickson; Gumede, Nicksy; Wolter, Nicole; Sitharam, Nikita; Ndodo, Nnaemeka; Ajayi, Nnennaya A; Tordo, Noël; Mbhele, Nokuzola; Razanajatovo, Norosoa H; Iguosadolo, Nosamiefan; Mba, Nwando; Kingsley, Ojide C; Sylvanus, Okogbenin; Femi, Oladiji; Adewumi, Olubusuyi M; Testimony, Olumade; Ogunsanya, Olusola A; Fakayode, Oluwatosin; Ogah, Onwe E; Oludayo, Ope-Ewe; Faye, Ousmane; Smith-Lawrence, Pamela; Ondoa, Pascale; Combe, Patrice; Nabisubi, Patricia; Semanda, Patrick; Oluniyi, Paul E; Arnaldo, Paulo; Quashie, Peter Kojo; Okokhere, Peter O; Bejon, Philip; Dussart, Philippe; Bester, Phillip A; Mbala, Placide K; Kaleebu, Pontiano; Abechi, Priscilla; El-Shesheny, Rabeh; Joseph, Rageema; Aziz, Ramy Karam; Essomba, René G; Ayivor-Djanie, Reuben; Njouom, Richard; Phillips, Richard O; Gorman, Richmond; Kingsley, Robert A; Neto Rodrigues, Rosa Maria DESA; Audu, Rosemary A; Carr, Rosina AA; Gargouri, Saba; Masmoudi, Saber; Bootsma, Sacha; Sankhe, Safietou; Mohamed, Sahra Isse; Femi, Saibu; Mhalla, Salma; Hosch, Salome; Kassim, Samar Kamal; Metha, Samar; Trabelsi, Sameh; Agwa, Sara Hassan; Mwangi, Sarah Wambui; Doumbia, Seydou; Makiala-Mandanda, Sheila; Aryeetey, Sherihane; Ahmed, Shymaa S; Ahmed, Side Mohamed; Elhamoumi, Siham; Moyo, Sikhulile; Lutucuta, Silvia; Gaseitsiwe, Simani; Jalloh, Simbirie; Andriamandimby, Soa Fy; Oguntope, Sobajo; Grayo, Solène; Lekana-Douki, Sonia; Prosolek, Sophie; Ouangraoua, Soumeya; van Wyk, Stephanie; Schaffner, Stephen F; Kanyerezi, Stephen; Ahuka-Mundeke, Steve; Rudder, Steven; Pillay, Sureshnee; Nabadda, Susan; Behillil, Sylvie; Budiaki, Sylvie L; van der Werf, Sylvie; Mashe, Tapfumanei; Mohale, Thabo; Le-Viet, Thanh; Velavan, Thirumalaisamy P; Schindler, Tobias; Maponga, Tongai G; Bedford, Trevor; Anyaneji, Ugochukwu J; Chinedu, Ugwu; Ramphal, Upasana; George, Uwem E; Enouf, Vincent; Nene, Vishvanath; Gorova, Vivianne; Roshdy, Wael H; Karim, Wasim Abdul; Ampofo, William K; Preiser, Wolfgang; Choga, Wonderful T; Ahmed, Yahaya Ali; Ramphal, Yajna; Bediako, Yaw; Naidoo, Yeshnee; Butera, Yvan; de Laurent, Zaydah R; Africa Pathogen Genomics Initiative (Africa PGI)‡; Ouma, Ahmed EO; von Gottberg, Anne; Githinji, George; Moeti, Matshidiso; Tomori, Oyewale; Sabeti, Pardis C; Sall, Amadou A; Oyola, Samuel O; Tebeje, Yenew K; Tessema, Sofonias K; de Oliveira, Tulio; Happi, Christian; Lessells, Richard; Nkengasong, John; Wilkinson, Eduan

Immune Imprinting Drives Human Norovirus Potential for Global Spread. (2022) Lindesmith, Lisa C; Boshier, Florencia AT; Brewer-Jensen, Paul D; Roy, Sunando; Costantini, Veronica; Mallory, Michael L; Zweigart, Mark; May, Samantha R; Conrad, Helen; O'Reilly, Kathleen M; Kelly, Daniel; Celma, Cristina C; Beard, Stuart; Williams, Rachel; Tutill, Helena J; Becker Dreps, Sylvia; Bucardo, Filemón; Allen, David J; Vinjé, Jan; Goldstein, Richard A; Breuer, Judith; Baric, Ralph S

Genetic Sequence Variation in the Plasmodium falciparum Histidine-Rich Protein 2 Gene from Field Isolates in Tanzania: Impact on Malaria Rapid Diagnosis. (2022) Kaaya, Robert D; Amour, Caroline; Matowo, Johnson J; Mosha, Franklin W; Kavishe, Reginald A; Beshir, Khalid B

Effectiveness of rapid SARS-CoV-2 genome sequencing in supporting infection control for hospital-onset COVID-19 infection: Multicentre, prospective study. (2022) Stirrup, Oliver; Blackstone, James; Mapp, Fiona; MacNeil, Alyson; Panca, Monica; Holmes, Alison; Machin, Nicholas; Shin, Gee Yen; Mahungu, Tabitha; Saeed, Kordo; Saluja, Tranprit; Taha, Yusri; Mahida, Nikunj; Pope, Cassie; Chawla, Anu; Cutino-Moguel, Maria-Teresa; Tamuri, Asif; Williams, Rachel; Darby, Alistair; Robertson, David L; Flaviani, Flavia; Nastouli, Eleni; Robson, Samuel; Smith, Darren; Loose, Matthew; Laing, Kenneth; Monahan, Irene; Kele, Beatrix; Haldenby, Sam; George, Ryan; Bashton, Matthew; Witney, Adam A; Byott, Matthew; Coll, Francesc; Chapman, Michael; Peacock, Sharon J; COG-UK HOCI Investigators; COVID-19 Genomics UK (COG-UK) consortium; Hughes, Joseph; Nebbia, Gaia; Partridge, David G; Parker, Matthew; Price, James Richard; Peters, Christine; Roy, Sunando; Snell, Luke B; de Silva, Thushan I; Thomson, Emma; Flowers, Paul; Copas, Andrew; Breuer, Judith

Draft Genome Sequence of an Enterotoxigenic Escherichia coli Strain Carrying Genes for Colonization Surface Antigen 13 and a Heat-Labile Toxin. (2022) Njoroge, Samuel M; Madé, Laure F; von Mentzer, Astrid; Kulohoma, Benard W; Kamanu, Timothy K; Ouko, Tom T; Kiiru, John; Ward, Melissa J; Thomson, Nicholas R; Fèvre, Eric M; Woolhouse, Mark; Kariuki, Samuel

Hybrid metagenome assemblies link carbohydrate structure with function in the human gut microbiome. (2022) Ravi, Anuradha; Troncoso-Rey, Perla; Ahn-Jarvis, Jennifer; Corbin, Kendall R; Harris, Suzanne; Harris, Hannah; Aydin, Alp; Kay, Gemma L; Le Viet, Thanh; Gilroy, Rachel; Pallen, Mark J; Page, Andrew J; O'Grady, Justin; Warren, Frederick J

Unravelling the Phylogeny of a Common Intestinal Protist: Intrageneric Diversity of Endolimax. (2022) Hocke, Emma Filtenborg; Jamy, Mahwash; Burki, Fabien; Clark, C Graham; Stensvold, Christen Rune picture_as_pdf

Colonization dynamics of extended-spectrum beta-lactamase-producing Enterobacterales in the gut of Malawian adults. (2022) Lewis, Joseph M; Mphasa, Madalitso; Banda, Rachel; Beale, Mathew A; Heinz, Eva; Mallewa, Jane; Jewell, Christopher; Faragher, Brian; Thomson, Nicholas R; Feasey, Nicholas A

The genus Serratia revisited by genomics. (2022) Williams, David J; Grimont, Patrick AD; Cazares, Adrián; Grimont, Francine; Ageron, Elisabeth; Pettigrew, Kerry A; Cazares, Daniel; Njamkepo, Elisabeth; Weill, François-Xavier; Heinz, Eva; Holden, Matthew TG; Thomson, Nicholas R; Coulthurst, Sarah J

Genomic surveillance of SARS-COV-2 reveals diverse circulating variant lineages in Nairobi and Kiambu Counties, Kenya. (2022) Kuja, Josiah O; Kanoi, Bernard N; Balboa, Renzo F; Shiluli, Clement; Maina, Michael; Waweru, Harrison; Gathii, Kimita; Mungai, Mary; Masika, Moses; Anzala, Omu; Mwau, Matilu; Clark, Taane G; Waitumbi, John; Gitaka, Jesse

Variation in CFHR3 determines susceptibility to meningococcal disease by controlling factor H concentrations. (2022) Kumar, Vikrant; Pouw, Richard B; Autio, Matias I; Sagmeister, Manfred G; Phua, Zai Yang; Borghini, Lisa; Wright, Victoria J; Hoggart, Clive; Pan, Bangfen; Tan, Antson Kiat Yee; Binder, Alexander; Brouwer, Mieke C; Pinnock, Ellie; De Groot, Ronald; Hazelzet, Jan; Emonts, Marieke; Van Der Flier, Michiel; Reiter, Karl; Nöthen, Markus M; Hoffmann, Per; EUCLIDS consortium; Schlapbach, Luregn J; Bellos, Evangelos; Anderson, Suzanne; Secka, Fatou; Martinón-Torres, Federico; Salas, Antonio; Fink, Colin; Carrol, Enitan D; Pollard, Andrew J; Coin, Lachlan J; Zenz, Werner; Wouters, Diana; Ang, Lay Teng; Hibberd, Martin L; Levin, Michael; Kuijpers, Taco W; Davila, Sonia

Synergies between environmental degradation and climate variation on malaria re-emergence in southern Venezuela: a spatiotemporal modelling study. (2022) Fletcher, Isabel K; Grillet, Maria Eugenia; Moreno, Jorge E; Drakeley, Chris; Hernández-Villena, Juan; Jones, Kate E; Lowe, Rachel

Plasmodium SAS4: basal body component of male cell which is dispensable for parasite transmission. (2022) Zeeshan, Mohammad; Brady, Declan; Markus, Robert; Vaughan, Sue; Ferguson, David; Holder, Anthony A; Tewari, Rita

August 2022

Detection of Klebsiella pneumoniae human gut carriage: a comparison of culture, qPCR, and whole metagenomic sequencing methods. (2022) Lindstedt, Kenneth; Buczek, Dorota; Pedersen, Torunn; Hjerde, Erik; Raffelsberger, Niclas; Suzuki, Yutaka; Brisse, Sylvain; Holt, Kathryn; Samuelsen, Ørjan; Sundsfjord, Arnfinn

Invariant surface glycoprotein 65 of Trypanosoma brucei is a complement C3 receptor. (2022) Macleod, Olivia JS; Cook, Alexander D; Webb, Helena; Crow, Mandy; Burns, Roisin; Redpath, Maria; Seisenberger, Stefanie; Trevor, Camilla E; Peacock, Lori; Schwede, Angela; Kimblin, Nicola; Francisco, Amanda F; Pepperl, Julia; Rust, Steve; Voorheis, Paul; Gibson, Wendy; Taylor, Martin C; Higgins, Matthew K; Carrington, Mark

Toolkit of Approaches To Support Target-Focused Drug Discovery for Plasmodium falciparum Lysyl tRNA Synthetase. (2022) Milne, Rachel; Wiedemar, Natalie; Corpas-Lopez, Victoriano; Moynihan, Eoin; Wall, Richard J; Dawson, Alice; Robinson, David A; Shepherd, Sharon M; Smith, Robert J; Hallyburton, Irene; Post, John M; Dowers, Karen; Torrie, Leah S; Gilbert, Ian H; Baragaña, Beatriz; Patterson, Stephen; Wyllie, Susan

Impact of Visceral Leishmaniasis on Local Organ Metabolism in Hamsters. (2022) Lesani, Mahbobeh; Gosmanov, Camil; Paun, Andrea; Lewis, Michael D; McCall, Laura-Isobel

Development of anti-Crimean-Congo hemorrhagic fever virus Gc and NP-specific ELISA for detection of antibodies in domestic animal sera. (2022) Belij-Rammerstorfer, Sandra; Limon, Georgina; Maze, Emmanuel A; Hannant, Kayleigh; Hughes, Ellen; Tchakarova, Simona R; Alexandrov, Tsviatko; Mmbaga, Blandina T; Willett, Brian; Booth, George; Lyons, Nicholas A; Baker, Natalie; Thomas, Kelly M; Wright, Daniel; Saunders, Jack; Browning, Clare; Wilsden, Ginette; Carroll, Miles; Hewson, Roger; Charleston, Bryan; Lambe, Teresa; Ludi, Anna B

Epidemiology and genomic analysis of Klebsiella oxytoca from a single hospital network in Australia. (2022) Stewart, James; Judd, Louise M; Jenney, Adam; Holt, Kathryn E; Wyres, Kelly L; Hawkey, Jane

ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting. (2022) Hawkey, Jane; Wyres, Kelly L; Judd, Louise M; Harshegyi, Taylor; Blakeway, Luke; Wick, Ryan R; Jenney, Adam WJ; Holt, Kathryn E

Implications of ACT Reprogramming on Performance-based Funding of the Global Fund. (2022) Lwin, S picture_as_pdf

Contrasting long-term dynamics of antimicrobial resistance and virulence plasmids in Salmonella Typhimurium from animals. (2022) Mellor, Kate C; Blackwell, Grace A; Cawthraw, Shaun A; Mensah, Nana E; Reid, Stuart WJ; Thomson, Nicholas R; Petrovska, Liljana; Mather, Alison E

A review of the genetic determinants of praziquantel resistance in Schistosoma mansoni: Is praziquantel and intestinal schistosomiasis a perfect match? (2022) Summers, Shannan; Bhattacharyya, Tapan; Allan, Fiona; Stothard, J Russell; Edielu, Andrew; Webster, Bonnie L; Miles, Michael A; Bustinduy, Amaya L

Characterizing the spatial distribution of multiple malaria diagnostic endpoints in a low-transmission setting in Lao PDR. (2022) Byrne, Isabel; Cramer, Estee; Nelli, Luca; Rerolle, Francois; Wu, Lindsey; Patterson, Catriona; Rosado, Jason; Dumont, Elin; Tetteh, Kevin KA; Dantzer, Emily; Hongvanthong, Bouasy; Fornace, Kimberley M; Stresman, Gillian; Lover, Andrew; Bennett, Adam; Drakeley, Chris

Synthesis, biological evaluation and computational studies of pyrazole derivatives as Mycobacterium tuberculosis CYP121A1 inhibitors. (2022) Alshabani, Lama A; Kumar, Amit; Willcocks, Sam J; Srithiran, Gayathri; Bhakta, Sanjib; Estrada, D Fernando; Simons, Claire

High-throughput barcoding method for the genetic surveillance of insecticide resistance and species identification in Anopheles gambiae complex malaria vectors. (2022) Campos, Monica; Phelan, Jody; Spadar, Anton; Collins, Emma; Gonçalves, Adéritow; Pelloquin, Bethanie; Vaselli, Natasha Marcella; Meiwald, Anne; Clark, Emma; Stica, Caleb; Orsborne, James; Sylla, Moussa; Edi, Constant; Camara, Denka; Mohammed, Abdul Rahim; Afrane, Yaw Asare; Kristan, Mojca; Walker, Thomas; Gomez, Lara Ferrero; Messenger, Louisa A; Clark, Taane G; Campino, Susana

Genomic epidemiological analysis of Klebsiella pneumoniae from Portuguese hospitals reveals insights into circulating antimicrobial resistance. (2022) Spadar, Anton; Phelan, Jody; Elias, Rita; Modesto, Ana; Caneiras, Cátia; Marques, Cátia; Lito, Luís; Pinto, Margarida; Cavaco-Silva, Patrícia; Ferreira, Helena; Pomba, Constança; Da Silva, Gabriela J; Saavedra, Maria José; Melo-Cristino, José; Duarte, Aida; Campino, Susana; Perdigão, João; Clark, Taane G

Highly Variable Expression of Merozoite Surface Protein MSPDBL2 in Diverse Plasmodium falciparum Clinical Isolates and Transcriptome Scans for Correlating Genes. (2022) Hocking, Suzanne E; Stewart, Lindsay B; Freville, Aline; Reid, Adam J; Tarr, Sarah J; Tetteh, Kevin KA; Flueck, Christian; Ahouidi, Ambroise D; Amambua-Ngwa, Alfred; Diakite, Mahamadou; Awandare, Gordon A; Conway, David J

Genomic analysis of hypervirulent Klebsiella pneumoniae reveals potential genetic markers for differentiation from classical strains. (2022) Spadar, Anton; Perdigão, João; Campino, Susana; Clark, Taane G

Norovirus attribution study: Detection of norovirus from the commercial food preparation environment in outbreak and non-outbreak premises. (2022) Elviss, Nicola C; Allen, David J; Kelly, Daniel; Akello, Joyce Odeke; Hau, Sarah; Fox, Andrew J; Hopkins, Mark; Derrick, Jade; O'Brien, Sarah; Iturriza-Gomara, Miren; Conducted as part of NoVAS picture_as_pdf

Plasmodium berghei leucine-rich repeat protein 1 downregulates protein phosphatase 1 activity and is required for efficient oocyst development. (2022) Fréville, Aline; Gnangnon, Bénédicte; Tremp, Annie Z; De Witte, Caroline; Cailliau, Katia; Martoriati, Alain; Aliouat, El Moukthar; Fernandes, Priyanka; Chhuon, Cerina; Silvie, Olivier; Marion, Sabrina; Guerrera, Ida Chiara; Dessens, Johannes T; Pierrot, Christine; Khalife, Jamal

Asthma exacerbations are associated with a decline in lung function: a longitudinal population-based study. (2022) Soremekun, Seyi; Heaney, Liam G; Skinner, Derek; Bulathsinhala, Lakmini; Carter, Victoria; Chaudhry, Isha; Hosseini, Naeimeh; Eleangovan, Neva; Murray, Ruth; Tran, Trung N; Emmanuel, Benjamin; Garcia Gil, Esther; Menzies-Gow, Andrew; Peters, Matthew; Lugogo, Njira; Jones, Rupert; Price, David B

July 2022

Anti-Campylobacter Probiotics: Latest Mechanistic Insights. (2022) Balta, Igori; Butucel, Eugenia; Stef, Lavinia; Pet, Ioan; Gradisteanu-Pircalabioru, Gratiela; Chifiriuc, Carmen; Gundogdu, Ozan; McCleery, David; Corcionivoschi, Nicolae

Characterization of Lymphocyte Subsets in Lymph Node and Spleen Sections in Fatal Pediatric Malaria. (2022) Mandala, Wilson L; Ward, Steve; Taylor, Terrie E; Wassmer, Samuel C

Portable sequencing of Mycobacterium tuberculosis for clinical and epidemiological applications. (2022) Gómez-González, Paula J; Campino, Susana; Phelan, Jody E; Clark, Taane G

High clustering rate and genotypic drug-susceptibility screening for the newly recommended anti-tuberculosis drugs among global extensively drug-resistant Mycobacterium tuberculosis isolates. (2022) Trisakul, Kanwara; Nonghanphithak, Ditthawat; Chaiyachat, Pratchakan; Kaewprasert, Orawee; Sakmongkoljit, Kankanon; Reechaipichitkul, Wipa; Chaiprasert, Angkana; Blair, David; Clark, Taane G; Faksri, Kiatichai

Etramp5 as a useful serological marker in children to assess the immediate effects of mass drug campaigns for malaria. (2022) Druetz, T; van den Hoogen, L; Stresman, G; Joseph, V; Hamre, KES; Fayette, C; Monestime, F; Presume, J; Romilus, I; Mondélus, G; Elismé, T; Cooper, S; Impoinvil, D; Ashton, RA; Rogier, E; Existe, A; Boncy, J; Chang, MA; Lemoine, JF; Drakeley, C; Eisele, TP

Investigation of the Role of Bile Salts in the Biogenesis and Virulence of Campylobacter jejuni Outer Membrane Vesicles. (2022) Davies, CHR

Multiplex PCR assay to detect high risk lineages of Salmonella Typhi and Paratyphi A. (2022) Khokhar, Fahad; Pickard, Derek; Dyson, Zoe; Iqbal, Junaid; Pragasam, Agila; John, Jobin Jacob; Veeraraghavan, Balaji; Qamar, Farah; Dougan, Gordon; MacQueen, Hilary; Rigas, Sushila; Holmes, Mark; Mutreja, Ankur

Regulatory T cells in erythema nodosum leprosum maintain anti-inflammatory function. (2022) Negera, Edessa; Bobosha, Kidist; Aseffa, Abraham; Dockrell, Hazel M; Lockwood, Diana NJ; Walker, Stephen L

Relationship between maternal and/or newborn cholesterol levels and neonatal septicemia: protocol for a Ugandan cohort of mother-newborn pairs. (2022) Ssebambulidde, Kenneth; Kayiira, Anthony; Segawa, Ivan; Namanda, Sylvia; Nakibuuka, Victoria; Musiime, Victor; Ward, Theresa H

Antibody dynamics in children with first or repeat Plasmodium falciparum infections. (2022) Rogier, Eric; Nace, Doug; Dimbu, Pedro R; Wakeman, Brian; Beeson, James G; Drakeley, Chris; Tetteh, Kevin; Plucinski, Mateusz

A framework for evaluating health system surveillance sensitivity to support public health decision-making for malaria elimination: a case study from Indonesia. (2022) Ahmad, Riris Andono; Nelli, Luca; Surendra, Henry; Arisanti, Risalia Reni; Lesmanawati, Dyah Ayu Shinta; Byrne, Isabel; Dumont, Elin; Drakeley, Chris; Stresman, Gillian; Wu, Lindsey

Comparison of treatment outcome definitions in drug-resistant tuberculosis patients with high incidence of acquired second-line drug resistance. (2022) Anderson, K; Pietersen, E; Dheda, K; van der Heijden, YF

Defining the Genes Required for Survival of Mycobacterium bovis in the Bovine Host Offers Novel Insights into the Genetic Basis of Survival of Pathogenic Mycobacteria. (2022) Gibson, Amanda J; Stiens, Jennifer; Passmore, Ian J; Faulkner, Valwynne; Miculob, Josephous; Willcocks, Sam; Coad, Michael; Berg, Stefan; Werling, Dirk; Wren, Brendan W; Nobeli, Irene; Villarreal-Ramos, Bernardo; Kendall, Sharon L

Impact of meningococcal ACWY conjugate vaccines on pharyngeal carriage in adolescents: evidence for herd protection from the UK MenACWY programme. (2022) Carr, Jeremy P; MacLennan, Jenny M; Plested, Emma; Bratcher, Holly B; Harrison, Odile B; Aley, Parvinder K; Bray, James E; Camara, Susana; Rodrigues, Charlene MC; Davis, Kimberly; Bartolf, Angela; Baxter, David; Cameron, J Claire; Cunningham, Richard; Faust, Saul N; Fidler, Katy; Gowda, Rohit; Heath, Paul T; Hughes, Stephen; Khajuria, Sujata; Orr, David; Raman, Mala; Smith, Andrew; Turner, David PJ; Whittaker, Elizabeth; Williams, Christopher J; Zipitis, Christos S; Pollard, Andrew J; Oliver, Jennifer; Morales-Aza, Begonia; Lekshmi, Aiswarya; Clark, Stephen A; Borrow, Ray; Christensen, Hannah; Trotter, Caroline; Finn, Adam; Maiden, Martin C; Snape, Matthew D; UKMenCar4 and ‘Be on the TEAM’ Study Collaborators

Transcriptional profiles predict treatment outcome in patients with tuberculosis and diabetes at diagnosis and at two weeks after initiation of anti-tuberculosis treatment. (2022) van Doorn, Cassandra LR; Eckold, Clare; Ronacher, Katharina; Ruslami, Rovina; van Veen, Suzanne; Lee, Ji-Sook; Kumar, Vinod; Kerry-Barnard, Sarah; Malherbe, Stephanus T; Kleynhans, Léanie; Stanley, Kim; Hill, Philip C; Joosten, Simone A; van Crevel, Reinout; Wijmenga, Cisca; Critchley, Julia A; Walzl, Gerhard; Alisjahbana, Bachti; Haks, Mariëlle C; Dockrell, Hazel M; Ottenhoff, Tom HM; Vianello, Eleonora; Cliff, Jacqueline M; TANDEM Consortium

CDC50 Orthologues in Plasmodium falciparum Have Distinct Roles in Merozoite Egress and Trophozoite Maturation. (2022) Patel, Avnish; Nofal, Stephanie D; Blackman, Michael J; Baker, David A

A Comparison of Two Methods for Detection of Norovirus RNA in Environmental Swab Samples. (2022) Kelly, Daniel; Allen, David J; Akello, Joyce O; Hau, Sarah; Iturriza-Gómara, Miren

Sero-epidemiological study of arbovirus infection following the 2015-2016 Zika virus outbreak in Cabo Verde. (2022) Ward, Daniel; Gomes, Ana Rita; Tetteh, Kevin KA; Sepúlveda, Nuno; Gomez, Lara Ferrero; Campino, Susana; Clark, Taane G

Pyroptosis in host defence against bacterial infection. (2022) Brokatzky, Dominik; Mostowy, Serge

Effects of the Lipid Profile, Type 2 Diabetes and Medication on the Metabolic Syndrome-Associated Gut Microbiome. (2022) Gradisteanu Pircalabioru, Gratiela; Liaw, Janie; Gundogdu, Ozan; Corcionivoschi, Nicolae; Ilie, Iuliana; Oprea, Luciana; Musat, Madalina; Chifiriuc, Mariana-Carmen

Vibrio cholerae O139 genomes provide a clue to why it may have failed to usher in the eighth cholera pandemic. (2022) Ramamurthy, Thandavarayan; Pragasam, Agila Kumari; Taylor-Brown, Alyce; Will, Robert C; Vasudevan, Karthick; Das, Bhabatosh; Srivastava, Sunil Kumar; Chowdhury, Goutam; Mukhopadhyay, Asish K; Dutta, Shanta; Veeraraghavan, Balaji; Thomson, Nicholas R; Sharma, Naresh C; Nair, Gopinath Balakrish; Takeda, Yoshifumi; Ghosh, Amit; Dougan, Gordon; Mutreja, Ankur

Clinical standards for drug-susceptible pulmonary TB. (2022) Akkerman, OW; Duarte, R; Tiberi, S; Schaaf, HS; Lange, C; Alffenaar, JWC; Denholm, J; Carvalho, ACC; Bolhuis, MS; Borisov, S; Bruchfeld, J; Cabibbe, AM; Caminero, JA; Carvalho, I; Chakaya, J; Centis, R; Dalcomo, MP; D Ambrosio, L; Dedicoat, M; Dheda, K; Dooley, KE; Furin, J; García-García, J-M; van Hest, NAH; de Jong, BC; Kurhasani, X; Märtson, AG; Mpagama, S; Torrico, M Munoz; Nunes, E; Ong, CWM; Palmero, DJ; Ruslami, R; Saktiawati, AMI; Semuto, C; Silva, DR; Singla, R; Solovic, I; Srivastava, S; de Steenwinkel, JEM; Story, A; Sturkenboom, MGG; Tadolini, M; Udwadia, ZF; Verhage, AR; Zellweger, JP; Migliori, GB

Development of a cost-effective ovine antibody-based therapy against SARS-CoV-2 infection and contribution of antibodies specific to the spike subunit proteins. (2022) Findlay-Wilson, Stephen; Easterbrook, Linda; Smith, Sandra; Pope, Neville; Humphries, Gareth; Schuhmann, Holger; Ngabo, Didier; Rayner, Emma; Otter, Ashley David; Coleman, Tom; Hicks, Bethany; Graham, Victoria Anne; Halkerston, Rachel; Apostolakis, Kostis; Taylor, Stephen; Fotheringham, Susan; Horton, Amanda; Tree, Julia Anne; Wand, Matthew; Hewson, Roger; Dowall, Stuart David

Molecular characterization of drug-resistant Mycobacterium tuberculosis among Filipino patients derived from the national tuberculosis prevalence survey Philippines 2016. (2022) Montoya, Jaime C; Malabad, John Carlo M; Ang, Concepcion F; Reyes, Lorenzo T; Basilio, Ramon P; Lim, Dodge R; Amarillo, Maria Lourdes E; Ama, Ma Cecilia G; Phelan, Jody E; Hibberd, Martin L; Clark, Taane G

June 2022

Whole genome sequence analysis of Salmonella Typhi provides evidence of phylogenetic linkage between cases of typhoid fever in Santiago, Chile in the 1980s and 2010-2016. (2022) Maes, Mailis; Sikorski, Michael J; Carey, Megan E; Higginson, Ellen E; Dyson, Zoe A; Fernandez, Alda; Araya, Pamela; Tennant, Sharon M; Baker, Stephen; Lagos, Rosanna; Hormazábal, Juan Carlos; Levine, Myron M; Dougan, Gordon

Screening strategies and laboratory assays to support Plasmodium falciparum histidine-rich protein deletion surveillance: where we are and what is needed. (2022) Beshir, Khalid B; Parr, Jonathan B; Cunningham, Jane; Cheng, Qin; Rogier, Eric

Strain Specific Variations in Acinetobacter baumannii Complement Sensitivity. (2022) Kamuyu, Gathoni; Ercoli, Giuseppe; Ramos-Sevillano, Elisa; Willcocks, Sam; Kewcharoenwong, Chidchamai; Kiratisin, Pattarachai; Taylor, Peter W; Wren, Brendan W; Lertmemongkolchai, Ganjana; Stabler, Richard A; Brown, Jeremy S

Estimating female malaria mosquito age by quantifying Y-linked genes in stored male spermatozoa. (2022) Madan, Damian; Rivera, Rafael; Ortega, Corrie; Touchon, Justin C; Kimball, Corinna; van Gemert, Geert-Jan; Graumans, Wouter; Matsuura, Stephanie; Parghi, Sean S; Bell, David; Bousema, Teun; Drakeley, Chris; Collins, Katharine A; Burkot, Thomas R

Plasmodium vivax malaria serological exposure markers: Assessing the degree and implications of cross-reactivity with P. knowlesi. (2022) Longley, Rhea J; Grigg, Matthew J; Schoffer, Kael; Obadia, Thomas; Hyslop, Stephanie; Piera, Kim A; Nekkab, Narimane; Mazhari, Ramin; Takashima, Eizo; Tsuboi, Takafumi; Harbers, Matthias; Tetteh, Kevin; Drakeley, Chris; Chitnis, Chetan E; Healer, Julie; Tham, Wai-Hong; Sattabongkot, Jetsumon; White, Michael T; Cooper, Daniel J; Rajahram, Giri S; Barber, Bridget E; William, Timothy; Anstey, Nicholas M; Mueller, Ivo

The international and intercontinental spread and expansion of antimicrobial-resistant Salmonella Typhi: a genomic epidemiology study. (2022) da Silva, Kesia Esther; Tanmoy, Arif Mohammad; Pragasam, Agila Kumari; Iqbal, Junaid; Sajib, Mohammad Saiful Islam; Mutreja, Ankur; Veeraraghavan, Balaji; Tamrakar, Dipesh; Qamar, Farah Naz; Dougan, Gordon; Bogoch, Isaac; Seidman, Jessica C; Shakya, Jivan; Vaidya, Krista; Carey, Megan E; Shrestha, Rajeev; Irfan, Seema; Baker, Stephen; Luby, Steve P; Cao, Yanjia; Dyson, Zoe Anne; Garrett, Denise O; John, Jacob; Kang, Gagandeep; Hooda, Yogesh; Saha, Samir K; Saha, Senjuti; Andrews, Jason R

Factors Associated With Human IgG Antibody Response to Anopheles albimanus Salivary Gland Extract, Artibonite Department, Haiti, 2017. (2022) Jaramillo-Underwood, Alicia; Impoinvil, Daniel; Sutcliff, Alice; Hamre, Karen ES; Joseph, Vena; Hoogen, Lotus van den; Lemoine, Jean Frantz; Ashton, Ruth A; Chang, Michelle A; Existe, Alexandre; Boncy, Jacques; Drakeley, Chris; Stresman, Gillian; Druetz, Thomas; Eisele, Thomas; Rogier, Eric

How has mass drug administration with dihydroartemisinin-piperaquine impacted molecular markers of drug resistance? A systematic review. (2022) Moss, Sophie; Mańko, Emilia; Krishna, Sanjeev; Campino, Susana; Clark, Taane G; Last, Anna

Multiplex Serology for Measurement of IgG Antibodies Against Eleven Infectious Diseases in a National Serosurvey: Haiti 2014-2015. (2022) Chan, YuYen; Martin, Diana; Mace, Kimberly E; Jean, Samuel E; Stresman, Gillian; Drakeley, Chris; Chang, Michelle A; Lemoine, Jean F; Udhayakumar, Venkatachalam; Lammie, Patrick J; Priest, Jeffrey W; Rogier, Eric William

Continuous Circulation of Chikungunya Virus during COVID-19 Pandemic in Jambi, Sumatra, Indonesia. (2022) Santoso, Marsha Sinditia; Haryanto, Sotianingsih; Rulian, Fadil; Hayati, Rahma F; Kristiani, Amanda; Kartika, Rini; Yohan, Benediktus; Hibberd, Martin L; Sasmono, R Tedjo

Quantifying Reductions in Plasmodium falciparum Infectivity to Mosquitos: A Sample Size Calculator to Inform Clinical Trials on Transmission-Reducing Interventions. (2022) Ramjith, Jordache; Alkema, Manon; Bradley, John; Dicko, Alassane; Drakeley, Chris; Stone, Will; Bousema, Teun

Application of multiplex bead serological assays to integrated monitoring of neglected tropical diseases. (2022) Chan, YL

Transcellular blood-brain barrier disruption in malaria-induced reversible brain edema. (2022) Jin, Jessica; Ba, Mame Aida; Wai, Chi Ho; Mohanty, Sanjib; Sahu, Praveen K; Pattnaik, Rajyabardhan; Pirpamer, Lukas; Fischer, Manuel; Heiland, Sabine; Lanzer, Michael; Frischknecht, Friedrich; Mueller, Ann-Kristin; Pfeil, Johannes; Majhi, Megharay; Cyrklaff, Marek; Wassmer, Samuel C; Bendszus, Martin; Hoffmann, Angelika

Antigenic Site Immunodominance Redirection Following Repeat Variant Exposure. (2022) Lindesmith, Lisa C; Brewer-Jensen, Paul D; Mallory, Michael L; Zweigart, Mark R; May, Samantha R; Kelly, Daniel; Williams, Rachel; Becker-Dreps, Sylvia; Bucardo, Filemón; Allen, David J; Breuer, Judith; Baric, Ralph S

May 2022

Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen. (2022) Gorrie, Claire L; Mirčeta, Mirjana; Wick, Ryan R; Judd, Louise M; Lam, Margaret MC; Gomi, Ryota; Abbott, Iain J; Thomson, Nicholas R; Strugnell, Richard A; Pratt, Nigel F; Garlick, Jill S; Watson, Kerrie M; Hunter, Peter C; Pilcher, David V; McGloughlin, Steve A; Spelman, Denis W; Wyres, Kelly L; Jenney, Adam WJ; Holt, Kathryn E

Low Levels of Factor H Family Proteins During Meningococcal Disease Indicate Systemic Processes Rather Than Specific Depletion by Neisseria meningitidis. (2022) van Beek, Anna E; Pouw, Richard B; Wright, Victoria J; Sallah, Neneh; Inwald, David; Hoggart, Clive; Brouwer, Mieke C; Galassini, Rachel; Thomas, John; Calvo-Bado, Leo; Fink, Colin G; Jongerius, Ilse; Hibberd, Martin; Wouters, Diana; Levin, Michael; Kuijpers, Taco W

High mortality among patients hospitalized for drug-resistant tuberculosis with acquired second-line drug resistance and high HIV prevalence. (2022) Anderson, Kim; Pietersen, Elize; Shepherd, Bryan E; Bian, Aihua; Dheda, Keertan; Warren, Robin; Sterling, Timothy R; van der Heijden, Yuri F

Transmission of Klebsiella strains and plasmids within and between grey-headed flying fox colonies. (2022) Vezina, Ben; Judd, Louise M; McDougall, Fiona K; Boardman, Wayne SJ; Power, Michelle L; Hawkey, Jane; Brisse, Sylvain; Monk, Jonathan M; Holt, Kathryn E; Wyres, Kelly L

Genomic epidemiology and temperature dependency of hypermucoviscous Klebsiella pneumoniae in Japan. (2022) Le, Mi Nguyen-Tra; Kayama, Shizuo; Wyres, Kelly L; Yu, Liansheng; Hisatsune, Junzo; Suzuki, Masato; Yahara, Koji; Terachi, Tsuneko; Sawa, Kana; Takahashi, Shin; Okuhara, Toshihiko; Kohama, Kunihiko; Holt, Kathryn E; Mizutani, Tetsu; Ohge, Hiroki; Sugai, Motoyuki

Asymptomatic School-Aged Children Are Important Drivers of Malaria Transmission in a High Endemicity Setting in Uganda. (2022) Rek, John; Blanken, Sara Lynn; Okoth, Joseph; Ayo, Daniel; Onyige, Ismail; Musasizi, Eric; Ramjith, Jordache; Andolina, Chiara; Lanke, Kjerstin; Arinaitwe, Emmanuel; Olwoch, Peter; Collins, Katharine A; Kamya, Moses R; Dorsey, Grant; Drakeley, Chris; Staedke, Sarah G; Bousema, Teun; Conrad, Melissa D

The Antioxidant Effect of Natural Antimicrobials in Shrimp Primary Intestinal Cells Infected with Nematopsis messor. (2022) Balta, Igori; Stef, Lavinia; Butucel, Eugenia; Gradisteanu Pircalabioru, Gratiela; Venig, Adelina; Ward, Patrick; Deshaies, Myriam; Pet, Ioan; Stef, Ducu; Koyun, Osman Y; Callaway, Todd R; Gundogdu, Ozan; Corcionivoschi, Nicolae

Probing Adamantane Arylhydroxamic Acids against Trypanosoma brucei and Trypanosoma cruzi. (2022) Foscolos, Angeliki Sofia; Tsotinis, Andrew; Taylor, Martin C; Kelly, John M; Papanastasiou, Ioannis P

Non-canonical endogenous expression of voltage-gated sodium channel NaV 1.7 subtype by the TE671 rhabdomyosarcoma cell line. (2022) Ngum, Neville M; Aziz, Muhammad YA; Mohammed Latif, Liaque; Wall, Richard J; Duce, Ian R; Mellor, Ian R

Characterisation of drug-resistant Mycobacterium tuberculosis mutations and transmission in Pakistan. (2022) Napier, Gary; Khan, Anwar Sheed; Jabbar, Abdul; Khan, Muhammad Tahir; Ali, Sajid; Qasim, Muhammad; Mohammad, Noor; Hasan, Rumina; Hasan, Zahra; Campino, Susana; Ahmad, Sajjad; Khattak, Baharullah; Waddell, Simon J; Khan, Taj Ali; Phelan, Jody E; Clark, Taane G picture_as_pdf

Microevolution of Trypanosoma cruzi reveals hybridization and clonal mechanisms driving rapid genome diversification. (2022) Matos, Gabriel Machado; Lewis, Michael D; Talavera-López, Carlos; Yeo, Matthew; Grisard, Edmundo C; Messenger, Louisa A; Miles, Michael A; Andersson, Björn

Epidemiological Prevalence of Phenotypical Resistances and Mobilised Colistin Resistance in Avian Commensal and Pathogenic E. coli from Denmark, France, The Netherlands, and the UK. (2022) Mead, Andrew; Billon-Lotz, Candice; Olsen, Rikke; Swift, Ben; Richez, Pascal; Stabler, Richard; Pelligand, Ludovic

Activity of a Carbohydrate-Binding Module Therapy, Neumifil, against SARS-CoV-2 Disease in a Hamster Model of Infection. (2022) Fell, Rachel; Potter, Jane A; Yuille, Samantha; Salguero, Franscisco J; Watson, Robert; Ngabo, Didier; Gooch, Karen; Hewson, Roger; Howat, David; Dowall, Stuart

Trypanosoma cruzi and Chagas disease: diversity, progress and challenges. (2022) Miles, Michael A

Mobility of antimicrobial resistance across serovars and disease presentations in non-typhoidal Salmonella from animals and humans in Vietnam. (2022) Bloomfield, Samuel; Duong, Vu Thuy; Tuyen, Ha Thanh; Campbell, James I; Thomson, Nicholas R; Parkhill, Julian; Le Phuc, Hoang; Chau, Tran Thi Hong; Maskell, Duncan J; Perron, Gabriel G; Ngoc, Nguyen Minh; Vi, Lu Lan; Adriaenssens, Evelien M; Baker, Stephen; Mather, Alison E

A breath of relief: High-flow nasal oxygen in a resource-limited setting. (2022) Kühn, L; Esmail, A; Oelofse, S; Dheda, K

The primate malaria parasites Plasmodium malariae, Plasmodium brasilianum and Plasmodium ovale spp.: genomic insights into distribution, dispersal and host transitions. (2022) Fuehrer, Hans-Peter; Campino, Susana; Sutherland, Colin J

Tuberculosis vaccines in the era of Covid-19 - what is taking us so long? (2022) Dockrell, Hazel M; McShane, Helen

Immunogenicity and safety of a SARS-CoV-2 recombinant spike protein nanoparticle vaccine in people living with and without HIV-1 infection: a randomised, controlled, phase 2A/2B trial. (2022) Madhi, Shabir A; Moodley, Dhayendre; Hanley, Sherika; Archary, Moherndran; Hoosain, Zaheer; Lalloo, Umesh; Louw, Cheryl; Fairlie, Lee; Fouche, Leon Frederik; Masilela, Mduduzi SL; Singh, Nishanta; Grobbelaar, Coert; Ahmed, Khatija; Benadé, Gabriella; Bhikha, Sutika; Bhorat, As'ad Ebrahim; Bhorat, Qasim; Joseph, Natasha; Dheda, Keertan; Esmail, Aliasgar; Foulkes, Sharne; Goga, Ameena; Oommen Jose, Aylin; Kruger, Gertruida; Kalonji, Dishiki J; Lalloo, Natasha; Lombaard, Johan J; Lombard Koen, Anthonet; Kany Luabeya, Angelique; Mngqibisa, Rosie; Petrick, Friedrich G; Pitsi, Annah; Tameris, Michele; Thombrayil, Asha; Vollgraaff, Pieter-Louis; Cloney-Clark, Shane; Zhu, Mingzhu; Bennett, Chijioke; Albert, Gary; Faust, Emmanuel; Plested, Joyce S; Fries, Lou; Robertson, Andreana; Neal, Susan; Cho, Iksung; Glenn, Greg M; Shinde, Vivek; 2019nCoV-501 Study Group

Single low-dose tafenoquine combined with dihydroartemisinin-piperaquine to reduce Plasmodium falciparum transmission in Ouelessebougou, Mali: a phase 2, single-blind, randomised clinical trial. (2022) Stone, Will; Mahamar, Almahamoudou; Smit, Merel J; Sanogo, Koualy; Sinaba, Youssouf; Niambele, Sidi M; Sacko, Adama; Keita, Sekouba; Dicko, Oumar M; Diallo, Makonon; Maguiraga, Seydina O; Samake, Siaka; Attaher, Oumar; Lanke, Kjerstin; Ter Heine, Rob; Bradley, John; McCall, Matthew BB; Issiaka, Djibrilla; Traore, Sekou F; Bousema, Teun; Drakeley, Chris; Dicko, Alassane

April 2022

SARS-CoV-2 Virus-like Particles Produced by a Single Recombinant Baculovirus Generate Anti-S Antibody and Protect against Variant Challenge. (2022) Sullivan, Edward; Sung, Po-Yu; Wu, Weining; Berry, Neil; Kempster, Sarah; Ferguson, Deborah; Almond, Neil; Jones, Ian M; Roy, Polly

Semi-Synthetic Analogues of Cryptolepine as a Potential Source of Sustainable Drugs for the Treatment of Malaria, Human African Trypanosomiasis, and Cancer. (2022) Abacha, Yabalu Z; Forkuo, Arnold Donkor; Gbedema, Stephen Y; Mittal, Nimisha; Ottilie, Sabine; Rocamora, Frances; Winzeler, Elizabeth A; van Schalkwyk, Donelly A; Kelly, John M; Taylor, Martin C; Reader, Janette; Birkholtz, Lyn-Marie; Lisgarten, David R; Cockcroft, Jeremy K; Lisgarten, John N; Palmer, Rex A; Talbert, Rosemary C; Shnyder, Steven D; Wright, Colin W

Transmission, distribution and drug resistance-conferring mutations of extensively drug-resistant tuberculosis in the Western Cape Province, South Africa. (2022) Oostvogels, Selien; Ley, Serej D; Heupink, Tim H; Dippenaar, Anzaan; Streicher, Elizabeth M; De Vos, Elise; Meehan, Conor J; Dheda, Keertan; Warren, Rob; Van Rie, Annelies

Septins promote caspase activity and coordinate mitochondrial apoptosis. (2022) Van Ngo, Hoan; Robertin, Stevens; Brokatzky, Dominik; Bielecka, Magdalena K; Lobato-Márquez, Damián; Torraca, Vincenzo; Mostowy, Serge

Engineering a suite of E. coli strains for enhanced expression of bacterial polysaccharides and glycoconjugate vaccines. (2022) Kay, Emily J; Mauri, Marta; Willcocks, Sam J; Scott, Timothy A; Cuccui, Jon; Wren, Brendan W

β-Lactam-Resistant Streptococcus pneumoniae Dynamics Following Treatment: A Dose-Response Meta-analysis. (2022) Griskaitis, Matas; Furuya-Kanamori, Luis; Allel, Kasim; Stabler, Richard; Harris, Patrick; Paterson, David L; Yakob, Laith

Multi-omics insights into host-viral response and pathogenesis in Crimean-Congo hemorrhagic fever viruses for novel therapeutic target. (2022) Neogi, Ujjwal; Elaldi, Nazif; Appelberg, Sofia; Ambikan, Anoop; Kennedy, Emma; Dowall, Stuart; Bagci, Binnur K; Gupta, Soham; Rodriguez, Jimmy E; Svensson-Akusjärvi, Sara; Monteil, Vanessa; Vegvari, Akos; Benfeitas, Rui; Banerjea, Akhil; Weber, Friedemann; Hewson, Roger; Mirazimi, Ali

A conserved malaria parasite protein required for maintenance of sporozoite cell shape and transmission. (2022) Dessens, Johannes T; Hesping, Eva

COVID-profiler: a webserver for the analysis of SARS-CoV-2 sequencing data. (2022) Phelan, Jody; Deelder, Wouter; Ward, Daniel; Campino, Susana; Hibberd, Martin L; Clark, Taane G

Molecular characterisation of second-line drug resistance among drug resistant tuberculosis patients tested in Uganda: a two and a half-year's review. (2022) Mujuni, Dennis; Kasemire, Dianah Linda; Ibanda, Ivan; Kabugo, Joel; Nsawotebba, Andrew; Phelan, Jody E; Majwala, Robert Kaos; Tugumisirize, Didas; Nyombi, Abdunoor; Orena, Beatrice; Turyahabwe, Irene; Byabajungu, Henry; Nadunga, Diana; Musisi, Kenneth; Joloba, Moses Lutakoome; Ssengooba, Willy

Host transcriptomic signatures of tuberculosis can predict immune reconstitution inflammatory syndrome in HIV patients. (2022) Mbandi, Stanley Kimbung; Painter, Hannah; Penn-Nicholson, Adam; Toefy, Asma; Erasmus, Mzwandile; Hanekom, Willem A; Scriba, Thomas J; Lai, Rachel PJ; Marais, Suzaan; Fletcher, Helen A; Meintjes, Graeme; Wilkinson, Robert J; Cotton, Mark F; Pahwa, Savita; Cameron, Mark J; Nemes, Elisa

Screening of wild deer populations for exposure to SARS-CoV-2 in the United Kingdom, 2020-2021. (2022) Holding, Maya; Otter, Ashley David; Dowall, Stuart; Takumi, Katsuhisa; Hicks, Bethany; Coleman, Tom; Hemingway, Georgia; Royds, Matthew; Findlay-Wilson, Stephen; Curran-French, Mollie; Vipond, Richard; Sprong, Hein; Hewson, Roger

Deletions of the Plasmodium falciparum histidine-rich protein 2/3 genes are common in field isolates from north-eastern Tanzania. (2022) Kaaya, Robert D; Kavishe, Reginald A; Tenu, Filemon F; Matowo, Johnson J; Mosha, Franklin W; Drakeley, Chris; Sutherland, Colin J; Beshir, Khalid B

A Cohort Study on the Duration of Plasmodium falciparum Infections During the Dry Season in The Gambia. (2022) Collins, Katharine A; Ceesay, Sukai; Drammeh, Sainabou; Jaiteh, Fatou K; Guery, Marc Antoine; Lanke, Kjerstin; Grignard, Lynn; Stone, Will; Conway, David J; D'Alessandro, Umberto; Bousema, Teun; Claessens, Antoine

Linear plasmids in Klebsiella and other Enterobacteriaceae. (2022) Hawkey, Jane; Cottingham, Hugh; Tokolyi, Alex; Wick, Ryan R; Judd, Louise M; Cerdeira, Louise; de Oliveira Garcia, Doroti; Wyres, Kelly L; Holt, Kathryn E

The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: A genotypic analysis. (2022) Walker, Timothy M; Miotto, Paolo; Köser, Claudio U; Fowler, Philip W; Knaggs, Jeff; Iqbal, Zamin; Hunt, Martin; Chindelevitch, Leonid; Farhat, Maha; Cirillo, Daniela Maria; Comas, Iñaki; Posey, James; Omar, Shaheed V; Peto, Timothy Ea; Suresh, Anita; Uplekar, Swapna; Laurent, Sacha; Colman, Rebecca E; Nathanson, Carl-Michael; Zignol, Matteo; Walker, Ann Sarah; CRyPTIC Consortium; Seq&Treat Consortium; Crook, Derrick W; Ismail, Nazir; Rodwell, Timothy C

March 2022

Immuno-epidemiological analysis of dengue to enhance surveillance. (2022) Biggs, JR

Primaquine and Plasmodium vivax Malaria Recurrence in Brazil. (2022) Greenwood, Brian; Drakeley, Chris

Analysis of Antimicrobial Resistance in Non-typhoidal Salmonella Collected From Pork Retail Outlets and Slaughterhouses in Vietnam Using Whole Genome Sequencing. (2022) Holohan, Niamh; Wallat, Maximilian; Hai Yen Luu, Thi; Clark, Eleanor; Truong, Duong Thi Quy; Xuan, Sinh Dang; Vu, Hue Thi Kim; Van Truong, Dung; Tran Huy, Hoang; Nguyen-Viet, Hung; Unger, Fred; Thi Thanh Dang, Son; Stabler, Richard A

Whole genome sequence analysis of Salmonella Typhi in Papua New Guinea reveals an established population of genotype 2.1.7 sensitive to antimicrobials. (2022) Dyson, Zoe Anne; Malau, Elisheba; Horwood, Paul F; Ford, Rebecca; Siba, Valentine; Yoannes, Mition; Pomat, William; Passey, Megan; Judd, Louise M; Ingle, Danielle J; Williamson, Deborah A; Dougan, Gordon; Greenhill, Andrew R; Holt, Kathryn E

PowerBacGWAS: a computational pipeline to perform power calculations for bacterial genome-wide association studies. (2022) Coll, Francesc; Gouliouris, Theodore; Bruchmann, Sebastian; Phelan, Jody; Raven, Kathy E; Clark, Taane G; Parkhill, Julian; Peacock, Sharon J

Using trained dogs and organic semi-conducting sensors to identify asymptomatic and mild SARS-CoV-2 infections: an observational study. (2022) Guest, Claire; Dewhirst, Sarah Y; Lindsay, Steve W; Allen, David J; Aziz, Sophie; Baerenbold, Oliver; Bradley, John; Chabildas, Unnati; Chen-Hussey, Vanessa; Clifford, Samuel; Cottis, Luke; Dennehy, Jessica; Foley, Erin; Gezan, Salvador A; Gibson, Tim; Greaves, Courtenay K; Kleinschmidt, Immo; Lambert, Sébastien; Last, Anna; Morant, Steve; Parker, Josephine EA; Pickett, John; Quilty, Billy J; Rooney, Ann; Shah, Manil; Somerville, Mark; Squires, Chelci; Walker, Martin; Logan, James G; COVID Dogs Research Team

Temporal distribution of Plasmodium falciparum recrudescence following artemisinin-based combination therapy: an individual participant data meta-analysis. (2022) WorldWide Antimalarial Resistance Network Methodology Study Grou

Developing sero-diagnostic tests to facilitate Plasmodium vivax Serological Test-and-Treat approaches: modeling the balance between public health impact and overtreatment. (2022) Obadia, Thomas; Nekkab, Narimane; Robinson, Leanne J; Drakeley, Chris; Mueller, Ivo; White, Michael T

Repositioning of a Diaminothiazole Series Confirmed to Target the Cyclin-Dependent Kinase CRK12 for Use in the Treatment of African Animal Trypanosomiasis. (2022) Smith, Alasdair; Wall, Richard J; Patterson, Stephen; Rowan, Tim; Rico Vidal, Eva; Stojanovski, Laste; Huggett, Margaret; Hampton, Shahienaz E; Thomas, Michael G; Corpas Lopez, Victoriano; Gillingwater, Kirsten; Duke, Jeff; Napier, Grant; Peter, Rose; Vitouley, Hervé S; Harrison, Justin R; Milne, Rachel; Jeacock, Laura; Baker, Nicola; Davis, Susan H; Simeons, Frederick; Riley, Jennifer; Horn, David; Brun, Reto; Zuccotto, Fabio; Witty, Michael J; Wyllie, Susan; Read, Kevin D; Gilbert, Ian H

Is there evidence of sustained human-mosquito-human transmission of the zoonotic malaria Plasmodium knowlesi? A systematic literature review. (2022) Ruiz Cuenca, Pablo; Key, Stephanie; Lindblade, Kim A; Vythilingam, Indra; Drakeley, Chris; Fornace, Kimberly

REL and BHLHE40 Variants Are Associated with IL-12 and IL-10 Responses and Tuberculosis Risk. (2022) Shah, Javeed A; Warr, Alex J; Graustein, Andrew D; Saha, Aparajita; Dunstan, Sarah J; Thuong, Nguyen TT; Thwaites, Guy E; Caws, Maxine; Thai, Phan VK; Bang, Nguyen D; Chau, Tran TH; Khor, Chiea Chuen; Li, Zheng; Hibberd, Martin; Chang, Xuling; Nguyen, Felicia K; Hernandez, Carlo A; Jones, Madison A; Sassetti, Christopher M; Fitzgerald, Katherine A; Musvosvi, Munyaradzi; Gela, Anele; Hanekom, Willem A; Hatherill, Mark; Scriba, Thomas J; Hawn, Thomas R

A curated collection of Klebsiella metabolic models reveals variable substrate usage and gene essentiality. (2022) Hawkey, Jane; Vezina, Ben; Monk, Jonathan M; Judd, Louise M; Harshegyi, Taylor; López-Fernández, Sebastián; Rodrigues, Carla; Brisse, Sylvain; Holt, Kathryn E; Wyres, Kelly L

Characterising spatial patterns of neglected tropical disease transmission using integrated sero-surveillance in Northern Ghana. (2022) Fornace, Kimberly M; Senyonjo, Laura; Martin, Diana L; Gwyn, Sarah; Schmidt, Elena; Agyemang, David; Marfo, Benjamin; Addy, James; Mensah, Ernest; Solomon, Anthony W; Bailey, Robin; Drakeley, Chris J; Pullan, Rachel L

SARS-CoV-2-specific T-cell responses to recurrent COVID-19 pneumonitis in a patient with post-CART B-cell aplasia. (2022) Hodder, Angus; Williams, Lindsey; Chu, Jan; Bamford, Alasdair; Rodrigues, Charlene; Gilmour, Kimberley; Awuah, Arnold; Tahami, Fariba; Dalton, Caroline; McGarrity, Orlagh; Vora, Ajay

Campylobacter jejuni modulates reactive oxygen species production and NADPH oxidase 1 expression in human intestinal epithelial cells. (2022) Hong, geung; Davies, cadi; Omole, zahra; Liaw, janie; grabowska, anna; Canonico, barbara; corcionivoschi, Nicolae; Wren, brendan; Dorrell, nick; Elmi, abdi; Gundogdu, Ozan

The effect of cumulative early life adversities, and their differential mediation through hair cortisol levels, on childhood growth and cognition: Three-year follow-up of a birth cohort in rural India. (2022) Mukherjee, Debarati; Bhopal, Sunil; Bhavnani, Supriya; Sharma, Kamal Kant; Roy, Reetabrata; Divan, Gauri; Mandal, Siddhartha; Soremekun, Seyi; Kirkwood, Betty; Patel, Vikram

House design and risk of malaria, acute respiratory infection and gastrointestinal illness in Uganda: A cohort study. (2022) Musiime, Alex K; Krezanoski, Paul J; Smith, David L; Kilama, Maxwell; Conrad, Melissa D; Otto, Geoffrey; Kyagamba, Patrick; Asiimwe, Jackson; Rek, John; Nankabirwa, Joaniter I; Arinaitwe, Emmanuel; Akol, Anne M; Kamya, Moses R; Staedke, Sarah G; Drakeley, Chris; Bousema, Teun; Lindsay, Steve W; Dorsey, Grant; Tusting, Lucy S

Prevalence and temporal changes of mutations linked to antimalarial drug resistance in Plasmodium falciparum and Plasmodium vivax in Palawan, Philippines. (2022) Bareng, Alison Paolo N; Grignard, Lynn; Reyes, Ralph; Fornace, Kim; Spencer, Freya; Macalinao, Ma Lourdes; Luchavez, Jennifer; Espino, Fe Esperanza; Drakeley, Chris; Hafalla, Julius Clemence R

Genomic diversity and antimicrobial resistance among non-typhoidal Salmonella associated with human disease in The Gambia. (2022) Darboe, Saffiatou; Bradbury, Richard S; Phelan, Jody; Kanteh, Abdoulie; Muhammad, Abdul-Khalie; Worwui, Archibald; Yang, Shangxin; Nwakanma, Davis; Perez-Sepulveda, Blanca; Kariuki, Samuel; Kwambana-Adams, Brenda; Antonio, Martin

Kaptive 2.0: updated capsule and lipopolysaccharide locus typing for the Klebsiella pneumoniae species complex. (2022) Lam, Margaret MC; Wick, Ryan R; Judd, Louise M; Holt, Kathryn E; Wyres, Kelly L

Investigating the role of BN-domains of FlhF involved in flagellar synthesis in Campylobacter jejuni. (2022) Li, Xiaofei; Chai, Qinwen; Zheng, Lina; Huang, Pingyu; Gundogdu, Ozan; Jiao, Xinan; Tang, Yuanyue; Huang, Jinlin

Remarkable genomic diversity among Escherichia isolates recovered from healthy chickens. (2022) Thomson, Nicholas M; Gilroy, Rachel; Getino, Maria; Foster-Nyarko, Ebenezer; van Vliet, Arnoud HM; La Ragione, Roberto M; Pallen, Mark J

February 2022

Transient internalization of Campylobacter jejuni in Amoebae enhances subsequent invasion of human cells. (2022) Nasher, Fauzy; Wren, Brendan W

Incomplete Recruitment of Protective T Cells Is Associated with Trypanosoma cruzi Persistence in the Mouse Colon. (2022) Ward, Alexander I; Lewis, Michael D; Taylor, Martin C; Kelly, John M

Serological evaluation of the effectiveness of reactive focal mass drug administration and reactive vector control to reduce malaria transmission in Zambezi Region, Namibia: Results from a secondary analysis of a cluster randomised trial. (2022) Wu, Lindsey; Hsiang, Michelle S; Prach, Lisa M; Schrubbe, Leah; Ntuku, Henry; Dufour, Mi-Suk Kang; Whittemore, Brooke; Scott, Valerie; Yala, Joy; Roberts, Kathryn W; Patterson, Catriona; Biggs, Joseph; Hall, Tom; Tetteh, Kevin KA; Gueye, Cara Smith; Greenhouse, Bryan; Bennett, Adam; Smith, Jennifer L; Katokele, Stark; Uusiku, Petrina; Mumbengegwi, Davis; Gosling, Roly; Drakeley, Chris; Kleinschmidt, Immo

RNA Sequencing Reveals Widespread Transcription of Natural Antisense RNAs in Entamoeba Species. (2022) Mornico, Damien; Hon, Chung-Chau; Koutero, Mikael; Weber, Christian; Coppée, Jean-Yves; Clark, C Graham; Dillies, Marie-Agnes; Guillen, Nancy

Synthetic biology tools for engineering Goodwin oscillation in Trypanosoma brucei brucei. (2022) Borg, Yanika; Alsford, Sam; Pavlika, Vasos; Zaikin, Alexei; Nesbeth, Darren N

The microbial ecology of Escherichia coli in the vertebrate gut. (2022) Foster-Nyarko, Ebenezer; Pallen, Mark J

Widespread sharing of pneumococcal strains in a rural African setting: proximate villages are more likely to share similar strains that are carried at multiple timepoints. (2022) Senghore, Madikay; Chaguza, Chrispin; Bojang, Ebrima; Tientcheu, Peggy-Estelle; Bancroft, Rowan E; Lo, Stephanie W; Gladstone, Rebecca A; McGee, Lesley; Worwui, Archibald; Foster-Nyarko, Ebenezer; Ceesay, Fatima; Okoi, Catherine Bi; Klugman, Keith P; Breiman, Robert F; Bentley, Stephen D; Adegbola, Richard; Antonio, Martin; Hanage, William P; Kwambana-Adams, Brenda A

Improved Detectability of Plasmodium falciparum Clones with Repeated Sampling in Incident and Chronic Infections in Burkina Faso. (2022) Barry, Aissata; Awandu, Shehu S; Tiono, Alfred B; Grignard, Lynn; Bousema, Teun; Collins, Katharine A

Evolution of SARS-CoV-2 mutational variants: Hysteria or hope for the future? (2022) Esmail, A; Scott, AJ; Dheda, K

Guidelines for the management of asthma in adults and adolescents: Position statement of the South African Thoracic Society - 2021 update. (2022) Lalloo, UG; Kalla, IS; Abdool-Gaffar, S; Dheda, K; Koegelenberg, CFN; Greenblatt, M; Feldman, C; Wong, ML; van Zyl-Smit, RN; Asthma Working Group of the South African Thoracic Society

January 2022

A Natural History of Disease Framework for Improving the Prevention, Management, and Research on Post-viral Fatigue Syndrome and Other Forms of Myalgic Encephalomyelitis/Chronic Fatigue Syndrome. (2022) O'Boyle, Shennae; Nacul, Luis; Nacul, Flavio E; Mudie, Kathleen; Kingdon, Caroline C; Cliff, Jacqueline M; Clark, Taane G; Dockrell, Hazel M; Lacerda, Eliana M

Population structure analysis and laboratory monitoring of Shigella by core-genome multilocus sequence typing. (2022) Yassine, Iman; Lefèvre, Sophie; Hansen, Elisabeth E; Ruckly, Corinne; Carle, Isabelle; Lejay-Collin, Monique; Fabre, Laëtitia; Rafei, Rayane; Clermont, Dominique; de la Gandara, Maria Pardos; Dabboussi, Fouad; Thomson, Nicholas R; Weill, François-Xavier

Cooperative Research and Infectious Disease Surveillance: A 2021 Epilogue. (2022) Parekh, Falgunee K; Hay, John; Tabynov, Kairat; Hewson, Roger; Fair, Jeanne M; Essbauer, Sandra; Yeh, Kenneth B

Polypolish: Short-read polishing of long-read bacterial genome assemblies. (2022) Wick, Ryan R; Holt, Kathryn E

Species interactions constrain adaptation and preserve ecological stability in an experimental microbial community. (2022) Barber, Jake N; Nicholson, Luke C; Woods, Laura C; Judd, Louise M; Sezmis, Aysha L; Hawkey, Jane; Holt, Kathryn E; McDonald, Michael J

Characterising regulation of virulence factors affecting the interaction between Clostridioides difficile and the intestinal microbiome. (2022) Harrison, MA

Correction to: Diversity and evolution of surface polysaccharide synthesis loci in Enterobacteriales. (2022) Holt, Kathryn E; Lassalle, Florent; Wyres, Kelly L; Wick, Ryan; Mostowy, Rafał J

Identification of a Proteasome-Targeting Arylsulfonamide with Potential for the Treatment of Chagas' Disease. (2022) Lima, Marta L; Tulloch, Lindsay B; Corpas-Lopez, Victoriano; Carvalho, Sandra; Wall, Richard J; Milne, Rachel; Rico, Eva; Patterson, Stephen; Gilbert, Ian H; Moniz, Sonia; MacLean, Lorna; Torrie, Leah S; Morgillo, Carmine; Horn, David; Zuccotto, Fabio; Wyllie, Susan

Author response: Social contact patterns and implications for infectious disease transmission – a systematic review and meta-analysis of contact surveys. (2022) Mousa, Andria; Winskill, Peter; Watson, Oliver John; Ratmann, Oliver; Monod, Mélodie; Ajelli, Marco; Diallo, Aldiouma; Dodd, Peter J; Grijalva, Carlos G; Kiti, Moses Chapa; Krishnan, Anand; Kumar, Rakesh; Kumar, Supriya; Kwok, Kin O; Lanata, Claudio F; de Waroux, Olivier Le Polain; Leung, Kathy; Mahikul, Wiriya; Melegaro, Alessia; Morrow, Carl D; Mossong, Joël; Neal, Eleanor FG; Nokes, D James; Pan-ngum, Wirichada; Potter, Gail E; Russell, Fiona M; Saha, Siddhartha; Sugimoto, Jonathan D; Wei, Wan In; Wood, Robin R; Wu, Joseph; Zhang, Juanjuan; Walker, Patrick; Whittaker, Charles

The acquisition of humoral immune responses targeting Plasmodium falciparum sexual stages in controlled human malaria infections. (2022) de Jong, Roos M; Alkema, Manon; Oulton, Tate; Dumont, Elin; Teelen, Karina; Nakajima, Rie; de Assis, Rafael Ramiro; Press, Kathleen W Dantzler; Ngotho, Priscilla; Tetteh, Kevin KA; Felgner, Phil; Marti, Matthias; Collins, Katharine A; Drakeley, Chris; Bousema, Teun; Stone, Will JR

C-type lectin 4 regulates broad-spectrum melanization-based refractoriness to malaria parasites. (2022) Simões, Maria L; Dong, Yuemei; Mlambo, Godfree; Dimopoulos, George

A modified decision tree approach to improve the prediction and mutation discovery for drug resistance in Mycobacterium tuberculosis. (2022) Deelder, Wouter; Napier, Gary; Campino, Susana; Palla, Luigi; Phelan, Jody; Clark, Taane G

Impact of azithromycin mass drug administration on the antibiotic-resistant gut microbiome in children: a randomized, controlled trial. (2022) Pickering, Harry; Hart, John D; Burr, Sarah; Stabler, Richard; Maleta, Ken; Kalua, Khumbo; Bailey, Robin L; Holland, Martin J

PglB function and glycosylation efficiency is temperature dependent when the pgl locus is integrated in the Escherichia coli chromosome. (2022) Terra, Vanessa S; Mauri, Marta; Sannasiddappa, Thippeswamy H; Smith, Alexander A; Stevens, Mark P; Grant, Andrew J; Wren, Brendan W; Cuccui, Jon; Glycoengineering of Veterinary Vaccines consortium (GoVV)

Current malaria infection, previous malaria exposure, and clinical profiles and outcomes of COVID-19 in a setting of high malaria transmission: an exploratory cohort study in Uganda. (2022) Achan, Jane; Serwanga, Asadu; Wanzira, Humphrey; Kyagulanyi, Tonny; Nuwa, Anthony; Magumba, Godfrey; Kusasira, Stephen; Sewanyana, Isaac; Tetteh, Kevin; Drakeley, Chris; Nakwagala, Fredrick; Aanyu, Helen; Opigo, Jimmy; Hamade, Prudence; Marasciulo, Madeleine; Baterana, Byarugaba; Tibenderana, James K

Diagnostic Characteristics of Lactate Dehydrogenase on a Multiplex Assay for Malaria Detection Including the Zoonotic Parasite Plasmodium knowlesi. (2022) Barney, Rebecca; Velasco, Miguel; Cooper, Caitlin A; Rashid, Andrew; Kyle, Dennis E; Moon, Robert W; Domingo, Gonzalo J; Jang, Ihn Kyung

Position statement on endoscopic lung volume reduction in South Africa: 2022 update. (2022) Koegelenberg, CFN; van Zyl-Smit, RN; Dheda, K; Allwood, BW; Vorster, MJ; Plekker, D; Slebos, D-J; Klooster, K; Shah, PL; Herth, FJF; Assembly on Interventional Pulmonology of the South African Thor

A protocol for a longitudinal, observational cohort study of infection and exposure to zoonotic and vector-borne diseases across a land-use gradient in Sabah, Malaysian Borneo: a socio-ecological systems approach. (2022) Fornace, Kimberly; Manin, Benny Obrain; Matthiopoulos, Jason; Ferguson, Heather M; Drakeley, Chris; Ahmed, Kamruddin; Khoon, Koay Teng; Ewers, Robert M; Daim, Sylvia; Chua, Tock Hing

De Novo Assembly of Plasmodium knowlesi Genomes From Clinical Samples Explains the Counterintuitive Intrachromosomal Organization of Variant SICAvar and kir Multiple Gene Family Members. (2022) Oresegun, Damilola R; Thorpe, Peter; Benavente, Ernest Diez; Campino, Susana; Muh, Fauzi; Moon, Robert William; Clark, Taane Gregory; Cox-Singh, Janet

Plasmodium falciparum serology: A comparison of two protein production methods for analysis of antibody responses by protein microarray. (2022) Oulton, Tate; Obiero, Joshua; Rodriguez, Isabel; Ssewanyana, Isaac; Dabbs, Rebecca A; Bachman, Christine M; Greenhouse, Bryan; Drakeley, Chris; Felgner, Phil L; Stone, Will; Tetteh, Kevin KA

Seroepidemiological surveillance, community perceptions and associated risk factors of malaria exposure among forest-goers in Northeastern Thailand. (2022) Rahim, Mohd Amirul Fitri A; Chuangchaiya, Sriwipa; Chanpum, Paisit; Palawong, Laun; Kantee, Panuwat; Dian, Nor Diyana; Lubis, Inke Nadia D; Divis, Paul CS; Kaneko, Akira; Tetteh, Kevin KA; Idris, Zulkarnain Md

Naturally acquired antibodies to gametocyte antigens are associated with reduced transmission of Plasmodium vivax gametocytes to Anopheles arabiensis mosquitoes. (2022) Tebeje, Surafel K; Chali, Wakweya; Hailemeskel, Elifaged; Ramjith, Jordache; Gashaw, Abrham; Ashine, Temesgen; Nebret, Desalegn; Esayas, Endashaw; Emiru, Tadele; Tsegaye, Tizita; Teelen, Karina; Lanke, Kjerstin; Takashima, Eizo; Tsuboi, Takafumi; Salinas, Nichole D; Tolia, Niraj H; Narum, David; Drakeley, Chris; Witkowski, Benoit; Vantaux, Amelie; Jore, Matthijs M; Stone, William JR; Hansen, Ivo S; Tadesse, Fitsum G; Bousema, Teun

Heterologous Expression and Evaluation of Novel Plasmodium falciparum Transmission Blocking Vaccine Candidates. (2022) de Jong, Roos M; Singh, Susheel K; Teelen, Karina; van de Vegte-Bolmer, Marga; van Gemert, Geert-Jan; Stone, Will JR; Locke, Emily; Plieskatt, Jordan; Theisen, Michael; Bousema, Teun; Jore, Matthijs M