Items where Author is "Antonio, Martin"

Year Item Type Full Text

2023

A global genomic perspective on the multidrug-resistant Streptococcus pneumoniae 15A-CC63 sub-lineage following pneumococcal conjugate vaccine introduction. (2023) Hawkins, Paulina A; Chochua, Sopio; Lo, Stephanie W; Belman, Sophie; Antonio, Martin; Kwambana-Adams, Brenda; von Gottberg, Anne; du Plessis, Mignon; Cornick, Jen; Beall, Bernard; Breiman, Robert F; Bentley, Stephen D; McGee, Lesley; The Global Pneumococcal Sequencing Consortium

2022

Mucosal Immune Profiles Associated with Diarrheal Disease Severity in Shigella- and Enteropathogenic Escherichia coli-Infected Children Enrolled in the Global Enteric Multicenter Study. (2022) Buskirk, Amanda D; Ndungo, Esther; Shimanovich, Avital A; Lam, Diana; Blackwelder, William C; Ikumapayi, Usman N; Ma, Bing; Powell, Helen; Antonio, Martin; Nataro, James P; Kaper, James B; Pasetti, Marcela F

Comparative Genomics of Disease and Carriage Serotype 1 Pneumococci. (2022) Chaguza, Chrispin; Ebruke, Chinelo; Senghore, Madikay; Lo, Stephanie W; Tientcheu, Peggy-Estelle; Gladstone, Rebecca A; Tonkin-Hill, Gerry; Cornick, Jennifer E; Yang, Marie; Worwui, Archibald; McGee, Lesley; Breiman, Robert F; Klugman, Keith P; Kadioglu, Aras; Everett, Dean B; Mackenzie, Grant; Croucher, Nicholas J; Roca, Anna; Kwambana-Adams, Brenda A; Antonio, Martin; Bentley, Stephen D

Genomic diversity and antimicrobial resistance among non-typhoidal Salmonella associated with human disease in The Gambia. (2022) Darboe, Saffiatou; Bradbury, Richard S; Phelan, Jody; Kanteh, Abdoulie; Muhammad, Abdul-Khalie; Worwui, Archibald; Yang, Shangxin; Nwakanma, Davis; Perez-Sepulveda, Blanca; Kariuki, Samuel; Kwambana-Adams, Brenda; Antonio, Martin

Emergence of a multidrug-resistant and virulent Streptococcus pneumoniae lineage mediates serotype replacement after PCV13: an international whole-genome sequencing study. (2022) Lo, Stephanie W; Mellor, Kate; Cohen, Robert; Alonso, Alba Redin; Belman, Sophie; Kumar, Narender; Hawkins, Paulina A; Gladstone, Rebecca A; von Gottberg, Anne; Veeraraghavan, Balaji; Ravikumar, KL; Kandasamy, Rama; Pollard, Sir Andrew J; Saha, Samir K; Bigogo, Godfrey; Antonio, Martin; Kwambana-Adams, Brenda; Mirza, Shaper; Shakoor, Sadia; Nisar, Imran; Cornick, Jennifer E; Lehmann, Deborah; Ford, Rebecca L; Sigauque, Betuel; Turner, Paul; Moïsi, Jennifer; Obaro, Stephen K; Dagan, Ron; Diawara, Idrissa; Skoczyńska, Anna; Wang, Hui; Carter, Philip E; Klugman, Keith P; Rodgers, Gail; Breiman, Robert F; McGee, Lesley; Bentley, Stephen D; Muñoz-Almagro, Carmen; Varon, Emmanuelle; Global Pneumococcal Sequencing Consortium

A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV. (2022) Ndlangisa, Kedibone M; du Plessis, Mignon; Lo, Stephanie; de Gouveia, Linda; Chaguza, Chrispin; Antonio, Martin; Kwambana-Adams, Brenda; Cornick, Jennifer; Everett, Dean B; Dagan, Ron; Hawkins, Paulina A; Beall, Bernard; Corso, Alejandra; Grassi Almeida, Samanta Cristine; Ochoa, Theresa J; Obaro, Stephen; Shakoor, Sadia; Donkor, Eric S; Gladstone, Rebecca A; Ho, Pak Leung; Paragi, Metka; Doiphode, Sanjay; Srifuengfung, Somporn; Ford, Rebecca; Moïsi, Jennifer; Saha, Samir K; Bigogo, Godfrey; Sigauque, Betuel; Eser, Özgen Köseoglu; Elmdaghri, Naima; Titov, Leonid; Turner, Paul; Kumar, KL Ravi; Kandasamy, Rama; Egorova, Ekaterina; Ip, Margaret; Breiman, Robert F; Klugman, Keith P; McGee, Lesley; Bentley, Stephen D; von Gottberg, Anne; The Global Pneumococcal Sequencing Consortium

Pulmonary non-tuberculous mycobacteria in colonisation and disease in The Gambia. (2022) Okoi, Catherine; Anderson, Suzanne T; Mulwa, Sarah; Worwui, Archibald; Antonio, Martin; Gehre, Florian; Adetifa, Ifedayo

Widespread sharing of pneumococcal strains in a rural African setting: proximate villages are more likely to share similar strains that are carried at multiple timepoints. (2022) Senghore, Madikay; Chaguza, Chrispin; Bojang, Ebrima; Tientcheu, Peggy-Estelle; Bancroft, Rowan E; Lo, Stephanie W; Gladstone, Rebecca A; McGee, Lesley; Worwui, Archibald; Foster-Nyarko, Ebenezer; Ceesay, Fatima; Okoi, Catherine Bi; Klugman, Keith P; Breiman, Robert F; Bentley, Stephen D; Adegbola, Richard; Antonio, Martin; Hanage, William P; Kwambana-Adams, Brenda A

2021

Intense and Mild First Epidemic Wave of Coronavirus Disease, The Gambia. (2021) Abatan, Baderinwa; Agboghoroma, Orighomisan; Akemoke, Fatai; Antonio, Martin; Awokola, Babatunde; Bittaye, Mustapha; Bojang, Abdoulie; Bojang, Kalifa; Brotherton, Helen; Cerami, Carla; Clarke, Ed; D'Alessandro, Umberto; de Silva, Thushan; Drammeh, Mariama; Forrest, Karen; Hofmann, Natalie; Jagne, Sherifo; Jah, Hawanatu; Jarju, Sheikh; Jaye, Assan; Jobe, Modou; Kampmann, Beate; Manjang, Buba; Martinez-Alvarez, Melisa; Mohammed, Nuredin; Nadjm, Behzad; Ndiath, Mamadou Ousmane; Nkereuwem, Esin; Nwakanma, Davis; Oko, Francis; Okoh, Emmanuel; Okomo, Uduak; Olatunji, Yekini; Oriero, Eniyou; Prentice, Andrew M; Roberts, Charles; Roca, Anna; Sabally, Babanding; Sambou, Sana; Samateh, Ahmadou; Secka, Ousman; Sesay, Abdul Karim; Singhateh, Yankuba; Susso, Bubacarr; Usuf, Effua; Vilane, Aminata; Wariri, Oghenebrume

Epidemiology of the Rhinovirus (RV) in African and Southeast Asian Children: A Case-Control Pneumonia Etiology Study. (2021) Baillie, Vicky L; Moore, David P; Mathunjwa, Azwifarwi; Baggett, Henry C; Brooks, Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; Knoll, Maria Deloria; Kotloff, Karen L; Levine, Orin S; O'Brien, Katherine L; Scott, Anthony G; Thea, Donald M; Antonio, Martin; Awori, Juliet O; Driscoll, Amanda J; Fancourt, Nicholas SS; Higdon, Melissa M; Karron, Ruth A; Morpeth, Susan C; Mulindwa, Justin M; Murdoch, David R; Park, Daniel E; Prosperi, Christine; Rahman, Mohammed Ziaur; Rahman, Mustafizur; Salaudeen, Rasheed A; Sawatwong, Pongpun; Somwe, Somwe Wa; Sow, Samba O; Tapia, Milagritos D; Simões, Eric AF; Madhi, Shabir A

Carriage Dynamics of Pneumococcal Serotypes in Naturally Colonized Infants in a Rural African Setting During the First Year of Life. (2021) Chaguza, Chrispin; Senghore, Madikay; Bojang, Ebrima; Lo, Stephanie W; Ebruke, Chinelo; Gladstone, Rebecca A; Tientcheu, Peggy-Estelle; Bancroft, Rowan E; Worwui, Archibald; Foster-Nyarko, Ebenezer; Ceesay, Fatima; Okoi, Catherine; McGee, Lesley; Klugman, Keith P; Breiman, Robert F; Barer, Michael R; Adegbola, Richard A; Antonio, Martin; Bentley, Stephen D; Kwambana-Adams, Brenda A

Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history. (2021) Coscolla, Mireia; Gagneux, Sebastien; Menardo, Fabrizio; Loiseau, Chloé; Ruiz-Rodriguez, Paula; Borrell, Sonia; Otchere, Isaac Darko; Asante-Poku, Adwoa; Asare, Prince; Sánchez-Busó, Leonor; Gehre, Florian; Sanoussi, C N'Dira; Antonio, Martin; Affolabi, Dissou; Fyfe, Janet; Beckert, Patrick; Niemann, Stefan; Alabi, Abraham S; Grobusch, Martin P; Kobbe, Robin; Parkhill, Julian; Beisel, Christian; Fenner, Lukas; Böttger, Erik C; Meehan, Conor J; Harris, Simon R; de Jong, Bouke C; Yeboah-Manu, Dorothy; Brites, Daniela

Molecular diagnostic assays for the detection of common bacterial meningitis pathogens: A narrative review. (2021) Diallo, Kanny; Feteh, Vitalis F; Ibe, Lilian; Antonio, Martin; Caugant, Dominique A; du Plessis, Mignon; Deghmane, Ala-Eddine; Feavers, Ian M; Fernandez, Katya; Fox, LeAnne M; Rodrigues, Charlene MC; Ronveaux, Olivier; Taha, Muhamed-Kheir; Wang, Xin; Brueggemann, Angela B; Maiden, Martin CJ; Harrison, Odile B

Genomic diversity of Escherichia coli from healthy children in rural Gambia. (2021) Foster-Nyarko, Ebenezer; Alikhan, Nabil-Fareed; Ikumapayi, Usman N; Sarwar, Golam; Okoi, Catherine; Tientcheu, Peggy-Estelle Maguiagueu; Defernez, Marianne; O'Grady, Justin; Antonio, Martin; Pallen, Mark J

Impact of the introduction of pneumococcal conjugate vaccination on invasive pneumococcal disease and pneumonia in The Gambia: 10 years of population-based surveillance. (2021) Gambia Pneumococcal Surveillance Group; Mackenzie, Grant A; Hill, Philip C; Jeffries, David J; Ndiaye, Malick; Sahito, Shah M; Hossain, Ilias; Uchendu, Uchendu; Ameh, David; Adeyemi, Oyedeji; Pathirana, Jayani; Olatunji, Yekini; Abatan, Baderinwa; Muhammad, Bilquees S; Ahameefula, Ebirim; Fombah, Augustin E; Adeshola, Banjo; Lobga, Babila G; Saha, Debasish; Mackenzie, Roslyn; Odutola, Aderonke; Plumb, Ian D; Akano, Aliu; Ebruke, Bernard E; Ideh, Readon C; Kuti, Bankole; Githua, Peter; Olutunde, Emmanuel; Ofordile, Ogochukwu; Green, Edward; Usuf, Effua; Badji, Henry; Ikumapayi, Usman Na; Manjang, Ahmed; Salaudeen, Rasheed; Nsekpong, E David; Jarju, Sheikh; Antonio, Martin; Sambou, Sana; Ceesay, Lamin; Lowe-Jallow, Yamundow; Fofana, Sidat; Jasseh, Momodou; Mulholland, Kim; Knoll, Maria; Levine, Orin S; Howie, Stephen R; Adegbola, Richard A; Greenwood, Brian M; Corrah, Tumani

Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture. (2021) Gilroy, Rachel; Ravi, Anuradha; Getino, Maria; Pursley, Isabella; Horton, Daniel L; Alikhan, Nabil-Fareed; Baker, Dave; Gharbi, Karim; Hall, Neil; Watson, Mick; Adriaenssens, Evelien M; Foster-Nyarko, Ebenezer; Jarju, Sheikh; Secka, Arss; Antonio, Martin; Oren, Aharon; Chaudhuri, Roy R; La Ragione, Roberto; Hildebrand, Falk; Pallen, Mark J

The Etiology of Childhood Pneumonia in The Gambia: Findings From the Pneumonia Etiology Research for Child Health (PERCH) Study. (2021) Howie, Stephen RC; Ebruke, Bernard E; McLellan, Jessica L; Deloria Knoll, Maria; Dione, Michel M; Feikin, Daniel R; Haddix, Meredith; Hammitt, Laura L; Machuka, Eunice M; Murdoch, David R; O'Brien, Katherine L; Ofordile, Ogochukwu; Olutunde, Oluyinka E; Parker, David; Prosperi, Christine; Salaudeen, Rasheed A; Shamsul, Arifin; Mackenzie, Grant; Antonio, Martin; Zaman, Syed MA

Molecular Epidemiology of Group A Streptococcus Infections in The Gambia. (2021) Jabang, Sona; Erhart, Annette; Darboe, Saffiatou; Baldeh, Aru-Kumba; Delforge, Valerie; Watson, Gabriella; Foster-Nyarko, Ebenezer; Salaudeen, Rasheed; Lawal, Bolarinde; Mackenzie, Grant; Botteaux, Anne; Antonio, Martin; Smeesters, Pierre R; On Behalf Of The Mrcg StrepA Study Group

Streptococcus pneumoniae serotypes that frequently colonise the human nasopharynx are common recipients of penicillin-binding protein gene fragments from Streptococcus mitis. (2021) Kalizang'oma, Akuzike; Chaguza, Chrispin; Gori, Andrea; Davison, Charlotte; Beleza, Sandra; Antonio, Martin; Beall, Bernard; Goldblatt, David; Kwambana-Adams, Brenda; Bentley, Stephen D; Heyderman, Robert S

Origin of imported SARS-CoV-2 strains in The Gambia identified from whole genome sequences. (2021) Kanteh, Abdoulie; Manneh, Jarra; Jabang, Sona; Kujabi, Mariama A; Sanyang, Bakary; Oboh, Mary A; Bojang, Abdoulie; Jallow, Haruna S; Nwakanma, Davis; Secka, Ousman; Roca, Anna; Amambua-Ngwa, Alfred; Antonio, Martin; Baldeh, Ignatius; Forrest, Karen; Samateh, Ahmadou Lamin; D'Alessandro, Umberto; Sesay, Abdul Karim

Characteristics of Salmonella Recovered From Stools of Children Enrolled in the Global Enteric Multicenter Study. (2021) Kasumba, Irene N; Pulford, Caisey V; Perez-Sepulveda, Blanca M; Sen, Sunil; Sayed, Nurulla; Permala-Booth, Jasnehta; Livio, Sofie; Heavens, Darren; Low, Ross; Hall, Neil; Roose, Anna; Powell, Helen; Farag, Tamer; Panchalingham, Sandra; Berkeley, Lynette; Nasrin, Dilruba; Blackwelder, William C; Wu, Yukun; Tamboura, Boubou; Sanogo, Doh; Onwuchekwa, Uma; Sow, Samba O; Ochieng, John B; Omore, Richard; Oundo, Joseph O; Breiman, Robert F; Mintz, Eric D; O'Reilly, Ciara E; Antonio, Martin; Saha, Debasish; Hossain, M Jahangir; Mandomando, Inacio; Bassat, Quique; Alonso, Pedro L; Ramamurthy, T; Sur, Dipika; Qureshi, Shahida; Zaidi, Anita KM; Hossain, Anowar; Faruque, Abu SG; Nataro, James P; Kotloff, Karen L; Levine, Myron M; Hinton, Jay CD; Tennant, Sharon M

Toward Establishing Integrated, Comprehensive, and Sustainable Meningitis Surveillance in Africa to Better Inform Vaccination Strategies. (2021) Kwambana-Adams, Brenda Anna; Cohen, Adam L; Hampton, Lee; Nhantumbo, Aquino Albino; Heyderman, Robert S; Antonio, Martin; Bita, Andre; Mwenda, Jason Mathiu

Interactions between fecal gut microbiome, enteric pathogens, and energy regulating hormones among acutely malnourished rural Gambian children. (2021) Nabwera, Helen M; Espinoza, Josh L; Worwui, Archibald; Betts, Modupeh; Okoi, Catherine; Sesay, Abdul K; Bancroft, Rowan; Agbla, Schadrac C; Jarju, Sheikh; Bradbury, Richard S; Colley, Mariama; Jallow, Amadou T; Liu, Jie; Houpt, Eric R; Prentice, Andrew M; Antonio, Martin; Bernstein, Robin M; Dupont, Christopher L; Kwambana-Adams, Brenda A

The Global Landscape of Pediatric Bacterial Meningitis Data Reported to the World Health Organization-Coordinated Invasive Bacterial Vaccine-Preventable Disease Surveillance Network, 2014-2019. (2021) Nakamura, Tomoka; Cohen, Adam L; Schwartz, Stephanie; Mwenda, Jason M; Weldegebriel, Goitom; Biey, Joseph NM; Katsande, Reggis; Ghoniem, Amany; Fahmy, Kamal; Rahman, Hossam Abdel; Videbaek, Dovile; Daniels, Danni; Singh, Simarjit; Wasley, Annemarie; Rey-Benito, Gloria; de Oliveira, Lucia; Ortiz, Claudia; Tondo, Emmanuel; Liyanage, Jayantha BL; Sharifuzzaman, Mohammad; Grabovac, Varja; Batmunkh, Nyambat; Logronio, Josephine; Heffelfinger, James; Fox, Kimberly; De Gouveia, Linda; von Gottberg, Anne; Du Plessis, Mignon; Kwambana-Adams, Brenda; Antonio, Martin; El Gohary, Samaa; Azmy, Aya; Gamal, Asmaa; Voropaeva, Elena; Egorova, Ekaterina; Urban, Yulia; Duarte, Carolina; Veeraraghavan, Balaji; Saha, Samir; Howden, Ben; Sait, Michelle; Jung, Sangoun; Bae, Songmee; Litt, David; Seaton, Shila; Slack, Mary; Antoni, Sebastien; Ouattara, Mahamoudou; Van Beneden, Chris; Serhan, Fatima

Pathogens Associated With Linear Growth Faltering in Children With Diarrhea and Impact of Antibiotic Treatment: The Global Enteric Multicenter Study. (2021) Nasrin, Dilruba; Blackwelder, William C; Sommerfelt, Halvor; Wu, Yukun; Farag, Tamer H; Panchalingam, Sandra; Biswas, Kousick; Saha, Debasish; Jahangir Hossain, M; Sow, Samba O; Reiman, Robert FB; Sur, Dipika; Faruque, Abu SG; Zaidi, Anita KM; Sanogo, Doh; Tamboura, Boubou; Onwuchekwa, Uma; Manna, Byomkesh; Ramamurthy, Thandavarayan; Kanungo, Suman; Omore, Richard; Ochieng, John B; Oundo, Joseph O; Das, Sumon K; Ahmed, Shahnawaz; Qureshi, Shahida; Quadri, Farheen; Adegbola, Richard A; Antonio, Martin; Mandomando, Inacio; Nhampossa, Tacilta; Bassat, Quique; Roose, Anna; O'Reilly, Ciara E; Mintz, Eric D; Ramakrishnan, Usha; Powell, Helen; Liang, Yuanyuan; Nataro, James P; Levine, Myron M; Kotloff, Karen L

Upper Respiratory Tract Co-detection of Human Endemic Coronaviruses and High-density Pneumococcus Associated With Increased Severity Among HIV-Uninfected Children Under 5 Years Old in the PERCH Study. (2021) Park, Daniel E; Higdon, Melissa M; Prosperi, Christine; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Steve RC; Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; Murdoch, David R; O'Brien, Katherine L; Scott, J Anthony G; Thea, Donald M; Antonio, Martin; Awori, Juliet O; Baillie, Vicky L; Bunthi, Charatdao; Kwenda, Geoffrey; Mackenzie, Grant A; Moore, David P; Morpeth, Susan C; Mwananyanda, Lawrence; Paveenkittiporn, Wantana; Ziaur Rahman, Mohammed; Rahman, Mustafizur; Rhodes, Julia; Sow, Samba O; Tapia, Milagritos D; Deloria Knoll, Maria

Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv. (2021) Sanoussi, C N'Dira; Coscolla, Mireia; Ofori-Anyinam, Boatema; Otchere, Isaac Darko; Antonio, Martin; Niemann, Stefan; Parkhill, Julian; Harris, Simon; Yeboah-Manu, Dorothy; Gagneux, Sebastien; Rigouts, Leen; Affolabi, Dissou; de Jong, Bouke C; Meehan, Conor J

Phylogeography and resistome of pneumococcal meningitis in West Africa before and after vaccine introduction. (2021) Senghore, Madikay; Tientcheu, Peggy-Estelle; Worwui, Archibald Kwame; Jarju, Sheikh; Okoi, Catherine; Suso, Sambou MS; Foster-Nyarko, Ebenezer; Ebruke, Chinelo; Sonko, Mohamadou; Kourna, Mamdou Hama; Agossou, Joseph; Tsolenyanu, Enyonam; Renner, Lorna Awo; Ansong, Daniel; Sanneh, Bakary; Cisse, Catherine Boni; Boula, Angeline; Miwanda, Berthe; Lo, Stephanie W; Gladstone, Rebecca A; Schwartz, Stephanie; Hawkins, Paulina; McGee, Lesley; Klugman, Keith P; Breiman, Robert F; Bentley, Stephen D; Mwenda, Jason M; Kwambana-Adams, Brenda Anna; Antonio, Martin

2020

Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation. (2020) Chaguza, Chrispin; Senghore, Madikay; Bojang, Ebrima; Gladstone, Rebecca A; Lo, Stephanie W; Tientcheu, Peggy-Estelle; Bancroft, Rowan E; Worwui, Archibald; Foster-Nyarko, Ebenezer; Ceesay, Fatima; Okoi, Catherine; McGee, Lesley; Klugman, Keith P; Breiman, Robert F; Barer, Michael R; Adegbola, Richard A; Antonio, Martin; Bentley, Stephen D; Kwambana-Adams, Brenda A

Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism. (2020) Chaguza, Chrispin; Yang, Marie; Cornick, Jennifer E; du Plessis, Mignon; Gladstone, Rebecca A; Kwambana-Adams, Brenda A; Lo, Stephanie W; Ebruke, Chinelo; Tonkin-Hill, Gerry; Peno, Chikondi; Senghore, Madikay; Obaro, Stephen K; Ousmane, Sani; Pluschke, Gerd; Collard, Jean-Marc; Sigaùque, Betuel; French, Neil; Klugman, Keith P; Heyderman, Robert S; McGee, Lesley; Antonio, Martin; Breiman, Robert F; von Gottberg, Anne; Everett, Dean B; Kadioglu, Aras; Bentley, Stephen D

The Etiology of Pneumonia From Analysis of Lung Aspirate and Pleural Fluid Samples: Findings From the Pneumonia Etiology Research for Child Health (PERCH) Study. (2020) Ebruke, Bernard E; Deloria Knoll, Maria; Haddix, Meredith; Zaman, Syed MA; Prosperi, Christine; Feikin, Daniel R; Hammitt, Laura L; Levine, Orin S; O'Brien, Katherine L; Murdoch, David R; Brooks, W Abdullah; Scott, J Anthony G; Kotloff, Karen L; Madhi, Shabir A; Thea, Donald M; Baillie, Vicky L; Chisti, Mohammod Jobayer; Dione, Michel; Driscoll, Amanda J; Fancourt, Nicholas; Karron, Ruth A; Le, Tham T; Mohamed, Shebe; Moore, David P; Morpeth, Susan C; Mwaba, John; Mwansa, James; Bin Shahid, Abu Sadat Mohammad Sayeem; Sow, Samba O; Tapia, Milagritos D; Antonio, Martin; Howie, Stephen RC

Genomic diversity of Escherichia coli isolates from non-human primates in the Gambia. (2020) Foster-Nyarko, Ebenezer; Alikhan, Nabil-Fareed; Ravi, Anuradha; Thilliez, Gaëtan; Thomson, Nicholas M; Baker, David; Kay, Gemma; Cramer, Jennifer D; O'Grady, Justin; Antonio, Martin; Pallen, Mark J

Genomic diversity of <i>Escherichia coli</i> isolates from non-human primates in the Gambia. (2020) Foster-Nyarko, Ebenezer; Alikhan, Nabil-Fareed; Ravi, Anuradha; Thilliez, Gaëtan; Thomson, Nicholas; Baker, David; Kay, Gemma; Cramer, Jennifer D; O’Grady, Justin; Antonio, Martin; Pallen, Mark J

Genomic diversity of Escherichia coli isolates from backyard chickens and guinea fowl in the Gambia. (2020) Foster-Nyarko, Ebenezer; Alikhan, Nabil-Fareed; Ravi, Anuradha; Thomson, Nicholas M; Jarju, Sheikh; Kwambana-Adams, Brenda A; Secka, Arss; O'Grady, Justin; Antonio, Martin; Pallen, Mark John

Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates. (2020) Gladstone, Rebecca A; Lo, Stephanie W; Goater, Richard; Yeats, Corin; Taylor, Ben; Hadfield, James; Lees, John A; Croucher, Nicholas J; van Tonder, Andries J; Bentley, Leon J; Quah, Fu Xiang; Blaschke, Anne J; Pershing, Nicole L; Byington, Carrie L; Balaji, Veeraraghavan; Hryniewicz, Waleria; Sigauque, Betuel; Ravikumar, KL; Almeida, Samanta Cristine Grassi; Ochoa, Theresa J; Ho, Pak Leung; du Plessis, Mignon; Ndlangisa, Kedibone M; Cornick, Jennifer E; Kwambana-Adams, Brenda; Benisty, Rachel; Nzenze, Susan A; Madhi, Shabir A; Hawkins, Paulina A; Pollard, Andrew J; Everett, Dean B; Antonio, Martin; Dagan, Ron; Klugman, Keith P; von Gottberg, Anne; Metcalf, Benjamin J; Li, Yuan; Beall, Bernard W; McGee, Lesley; Breiman, Robert F; Aanensen, David M; Bentley, Stephen D; The Global Pneumococcal Sequencing Consortium

Etiology of Pediatric Meningitis in West Africa Using Molecular Methods in the Era of Conjugate Vaccines against Pneumococcus, Meningococcus, and Haemophilus influenzae Type b. (2020) Kwambana-Adams, Brenda A; Liu, Jie; Okoi, Catherine; Mwenda, Jason M; Mohammed, Nuredin I; Tsolenyanu, Enyonam; Renner, Lorna Awo; Ansong, Daniel; Tagbo, Beckie N; Bashir, Muhammad F; Hama, Mamadou Kourna; Sonko, Mouhamadou A; Gratz, Jean; Worwui, Archibald; Ndow, Peter; Cohen, Adam L; Serhan, Fatima; Mihigo, Richard; Antonio, Martin; Houpt, Eric; Paediatric Bacterial Meningitis Surveillance Network in West Afr

Diarrhoeal disease and subsequent risk of death in infants and children residing in low-income and middle-income countries: analysis of the GEMS case-control study and 12-month GEMS-1A follow-on study. (2020) Levine, Myron M; Nasrin, Dilruba; Acácio, Sozinho; Bassat, Quique; Powell, Helen; Tennant, Sharon M; Sow, Samba O; Sur, Dipika; Zaidi, Anita KM; Faruque, Abu SG; Hossain, M Jahangir; Alonso, Pedro L; Breiman, Robert F; O'Reilly, Ciara E; Mintz, Eric D; Omore, Richard; Ochieng, John B; Oundo, Joseph O; Tamboura, Boubou; Sanogo, Doh; Onwuchekwa, Uma; Manna, Byomkesh; Ramamurthy, Thandavarayan; Kanungo, Suman; Ahmed, Shahnawaz; Qureshi, Shahida; Quadri, Farheen; Hossain, Anowar; Das, Sumon K; Antonio, Martin; Saha, Debasish; Mandomando, Inacio; Blackwelder, William C; Farag, Tamer; Wu, Yukun; Houpt, Eric R; Verweiij, Jaco J; Sommerfelt, Halvor; Nataro, James P; Robins-Browne, Roy M; Kotloff, Karen L

A mosaic tetracycline resistance gene tet(S/M) detected in an MDR pneumococcal CC230 lineage that underwent capsular switching in South Africa. (2020) Lo, Stephanie W; Gladstone, Rebecca A; van Tonder, Andries J; Du Plessis, Mignon; Cornick, Jennifer E; Hawkins, Paulina A; Madhi, Shabir A; Nzenze, Susan A; Kandasamy, Rama; Ravikumar, KL; Elmdaghri, Naima; Kwambana-Adams, Brenda; Almeida, Samanta Cristine Grassi; Skoczynska, Anna; Egorova, Ekaterina; Titov, Leonid; Saha, Samir K; Paragi, Metka; Everett, Dean B; Antonio, Martin; Klugman, Keith P; Li, Yuan; Metcalf, Benjamin J; Beall, Bernard; McGee, Lesley; Breiman, Robert F; Bentley, Stephen D; von Gottberg, Anne; Global Pneumococcal Sequencing Consortium

COVID-19 pandemic in west Africa. (2020) Martinez-Alvarez, Melisa; Jarde, Alexander; Usuf, Effua; Brotherton, Helen; Bittaye, Mustapha; Samateh, Ahmadou L; Antonio, Martin; Vives-Tomas, Joan; D'Alessandro, Umberto; Roca, Anna

Comparative genomics shows differences in the electron transport and carbon metabolic pathways of Mycobacterium africanum relative to Mycobacterium tuberculosis and suggests an adaptation to low oxygen tension. (2020) Ofori-Anyinam, Boatema; Riley, Abi Janet; Jobarteh, Tijan; Gitteh, Ensa; Sarr, Binta; Faal-Jawara, Tutty Isatou; Rigouts, Leen; Senghore, Madikay; Kehinde, Aderemi; Onyejepu, Nneka; Antonio, Martin; de Jong, Bouke C; Gehre, Florian; Meehan, Conor J

Evolution of Mycobacterium tuberculosis complex lineages and their role in an emerging threat of multidrug resistant tuberculosis in Bamako, Mali. (2020) Senghore, Madikay; Diarra, Bassirou; Gehre, Florian; Otu, Jacob; Worwui, Archibald; Muhammad, Abdul Khalie; Kwambana-Adams, Brenda; Kay, Gemma L; Sanogo, Moumine; Baya, Bocar; Orsega, Susan; Doumbia, Seydou; Diallo, Souleymane; de Jong, Bouke C; Pallen, Mark J; Antonio, Martin

Impact of routine vaccination against Haemophilus influenzae type b in The Gambia: 20 years after its introduction. (2020) Zaman, Syed Ma; Howie, Stephen Rc; Ochoge, Magnus; Secka, Ousman; Bah, Alasana; Baldeh, Ignatius; Sanneh, Bakary; Darboe, Saffiatou; Ceesay, Buntung; Camara, Haddy Bah; Mawas, Fatme; Ndiaye, Malick; Hossain, Ilias; Salaudeen, Rasheed; Bojang, Kalifa; Ceesay, Samba; Sowe, Dawda; Hossain, M Jahangir; Mulholland, Kim; Kwambana-Adams, Brenda A; Okoi, Catherine; Badjie, Siaka; Ceesay, Lamin; Mwenda, Jason M; Cohen, Adam L; Agocs, Mary; Mihigo, Richard; Bottomley, Christian; Antonio, Martin; Mackenzie, Grant A

2019

Declines in Pediatric Bacterial Meningitis in the Republic of Benin Following Introduction of Pneumococcal Conjugate Vaccine: Epidemiological and Etiological Findings, 2011-2016. (2019) Agossou, Joseph; Ebruke, Chinelo; Noudamadjo, Alphonse; Adédémy, Julien D; Dènon, Eric Y; Bankolé, Honoré S; Dogo, Mariam A; Assogba, Rolande; Alassane, Moussa; Condé, Abdoullah; Mohamed, Falilatou Agbeille; Kpanidja, Gérard; Gomina, Moutawakilou; Hounsou, François; Aouanou, Basile G; Okoi, Catherine; Oluwalana, Claire; Worwui, Archibald; Ndow, Peter S; Nounagnon, Jean; Mwenda, Jason M; Sossou, Rock A; Kwambana-Adams, Brenda A; Antonio, Martin

Rapid growth is a dominant predictor of hepcidin suppression and declining ferritin in Gambian infants. (2019) Armitage, Andrew E; Agbla, Schadrac C; Betts, Modupeh; Sise, Ebrima A; Jallow, Momodou W; Sambou, Ellen; Darboe, Bakary; Worwui, Archibald; Weinstock, George M; Antonio, Martin; Pasricha, Sant-Rayn; Prentice, Andrew M; Drakesmith, Hal; Darboe, Momodou K; Kwambana-Adams, Brenda Anna

High burden and seasonal variation of paediatric scabies and pyoderma prevalence in The Gambia: A cross-sectional study. (2019) Armitage, Edwin P; Senghore, Elina; Darboe, Saffiatou; Barry, Momodou; Camara, Janko; Bah, Sulayman; Marks, Michael; Cerami, Carla; Roca, Anna; Antonio, Martin; Turner, Claire E; de Silva, Thushan I

Etiology of Bacterial Meningitis Among Children <5 Years Old in Côte d'Ivoire: Findings of Hospital-based Surveillance Before and After Pneumococcal Conjugate Vaccine Introduction. (2019) Boni-Cisse, Catherine; Jarju, Sheikh; Bancroft, Rowan E; Lepri, Nicaise A; Kone, Hamidou; Kofi, N'zue; Britoh-Mlan, Alice; Zaba, Flore Sandrine; Usuf, Effua; Ndow, Peter Sylvanus; Worwui, Archibald; Mwenda, Jason M; Biey, Joseph N; Ntsama, Bernard; Kwambana-Adams, Brenda A; Antonio, Martin

Hospital-based Surveillance Provides Insights Into the Etiology of Pediatric Bacterial Meningitis in Yaoundé, Cameroon, in the Post-Vaccine Era. (2019) Boula, Angeline; Senghore, Madikay; Ngoh, Rose; Tassadjo, Flaubert; Fonkoua, Marie-Christine; Nzouankeu, Ariane; Njiki, Mina Kenkela; Musi, Jeanne; Bebey, Sandrine; Ngo Baleba, Madeline; Nkembe, Angeline; Médjina, Sidonie; Ndow, Peter S; Worwui, Archibald; Kobela, Marie; Nimpa, Marceline; Mwenda, Jason M; N'diaye, Aboubacar; Kwambana-Adams, Brenda A; Antonio, Martin

Hospital-based Surveillance Provides Insights Into the Etiology of Pediatric Bacterial Meningitis in Yaoundé, Cameroon, in the Post-Vaccine Era. (2019) Boula, Angeline; Senghore, Madikay; Ngoh, Rose; Tassadjo, Flaubert; Fonkoua, Marie-Christine; Nzouankeu, Ariane; Njiki, Mina Kenkela; Musi, Jeanne; Bebey, Sandrine; Ngo Baleba, Madeline; Nkembe, Angeline; Médjina, Sidonie; Ndow, Peter S; Worwui, Archibald; Kobela, Marie; Nimpa, Marceline; Mwenda, Jason M; N'diaye, Aboubacar; Kwambana-Adams, Brenda A; Antonio, Martin

Prevalence of Panton-Valentine Leukocidin (PVL) and Antimicrobial Resistance in Community-Acquired Clinical Staphylococcus aureus in an Urban Gambian Hospital: A 11-Year Period Retrospective Pilot Study. (2019) Darboe, Saffiatou; Dobreniecki, Sarah; Jarju, Sheikh; Jallow, Mamadou; Mohammed, Nuredin Ibrahim; Wathuo, Miriam; Ceesay, Buntung; Tweed, Sam; Basu Roy, Robindra; Okomo, Uduak; Kwambana-Adams, Brenda; Antonio, Martin; Bradbury, Richard S; de Silva, Thushan I; Forrest, Karen; Roca, Anna; Lawal, Bolarinde Joseph; Nwakanma, Davis; Secka, Ousman

Community-acquired Invasive Bacterial Disease in Urban Gambia, 2005-2015: A Hospital-based Surveillance. (2019) Darboe, Saffiatou; Okomo, Uduak; Muhammad, Abdul-Khalie; Ceesay, Buntung; Jallow, Mamadou; Usuf, Effua; Tweed, Sam; Akpalu, Edem; Kwambana-Adams, Brenda; Kariuki, Samuel; Antonio, Martin; Bradbury, Richard S; Forrest, Karen; de Silva, Thushan I; Lawal, Bolarinde Joseph; Nwakanma, Davis; Secka, Ousman; Roca, Anna

International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact. (2019) Gladstone, Rebecca A; Lo, Stephanie W; Lees, John A; Croucher, Nicholas J; van Tonder, Andries J; Corander, Jukka; Page, Andrew J; Marttinen, Pekka; Bentley, Leon J; Ochoa, Theresa J; Ho, Pak Leung; du Plessis, Mignon; Cornick, Jennifer E; Kwambana-Adams, Brenda; Benisty, Rachel; Nzenze, Susan A; Madhi, Shabir A; Hawkins, Paulina A; Everett, Dean B; Antonio, Martin; Dagan, Ron; Klugman, Keith P; von Gottberg, Anne; McGee, Lesley; Breiman, Robert F; Bentley, Stephen D; Global Pneumococcal Sequencing Consortium

Cryptosporidium infection in rural Gambian children: Epidemiology and risk factors. (2019) Hossain, M Jahangir; Saha, Debasish; Antonio, Martin; Nasrin, Dilruba; Blackwelder, William C; Ikumapayi, Usman N; Mackenzie, Grant A; Adeyemi, Mitchell; Jasseh, Momodou; Adegbola, Richard A; Roose, Anna W; Kotloff, Karen L; Levine, Myron M

The incidence, aetiology, and adverse clinical consequences of less severe diarrhoeal episodes among infants and children residing in low-income and middle-income countries: a 12-month case-control study as a follow-on to the Global Enteric Multicenter Study (GEMS). (2019) Kotloff, Karen L; Nasrin, Dilruba; Blackwelder, William C; Wu, Yukun; Farag, Tamer; Panchalingham, Sandra; Sow, Samba O; Sur, Dipika; Zaidi, Anita KM; Faruque, Abu SG; Saha, Debasish; Alonso, Pedro L; Tamboura, Boubou; Sanogo, Doh; Onwuchekwa, Uma; Manna, Byomkesh; Ramamurthy, Thandavarayan; Kanungo, Suman; Ahmed, Shahnawaz; Qureshi, Shahida; Quadri, Farheen; Hossain, Anowar; Das, Sumon K; Antonio, Martin; Hossain, M Jahangir; Mandomando, Inacio; Acácio, Sozinho; Biswas, Kousick; Tennant, Sharon M; Verweij, Jaco J; Sommerfelt, Halvor; Nataro, James P; Robins-Browne, Roy M; Levine, Myron M

Pediatric Bacterial Meningitis Surveillance in Niger: Increased Importance of Neisseria meningitidis Serogroup C, and a Decrease in Streptococcus pneumoniae Following 13-Valent Pneumococcal Conjugate Vaccine Introduction. (2019) Kourna Hama, Mamadou; Khan, Dam; Laouali, Boubou; Okoi, Catherine; Yam, Abdoulaye; Haladou, Moussa; Worwui, Archibald; Ndow, Peter Sylvanus; Nse Obama, Ricardo; Mwenda, Jason M; Biey, Joseph; Ntsama, Bernard; Kwambana-Adams, Brenda A; Antonio, Martin

Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study. (2019) Lo, Stephanie W; Gladstone, Rebecca A; van Tonder, Andries J; Lees, John A; du Plessis, Mignon; Benisty, Rachel; Givon-Lavi, Noga; Hawkins, Paulina A; Cornick, Jennifer E; Kwambana-Adams, Brenda; Law, Pierra Y; Ho, Pak Leung; Antonio, Martin; Everett, Dean B; Dagan, Ron; von Gottberg, Anne; Klugman, Keith P; McGee, Lesley; Breiman, Robert F; Bentley, Stephen D; Global Pneumococcal Sequencing Consortium

Pediatric Bacterial Meningitis Surveillance in the World Health Organization African Region Using the Invasive Bacterial Vaccine-Preventable Disease Surveillance Network, 2011-2016. (2019) Mwenda, Jason M; Soda, Elizabeth; Weldegebriel, Goitom; Katsande, Regis; Biey, Joseph Nsiari-Muzeyi; Traore, Tieble; de Gouveia, Linda; du Plessis, Mignon; von Gottberg, Anne; Antonio, Martin; Kwambana-Adams, Brenda; Worwui, Archibald; Gierke, Ryan; Schwartz, Stephanie; van Beneden, Chris; Cohen, Adam; Serhan, Fatima; Lessa, Fernanda C

Immunogenicity of pneumococcal conjugate vaccine formulations containing pneumococcal proteins, and immunogenicity and reactogenicity of co-administered routine vaccines - A phase II, randomised, observer-blind study in Gambian infants. (2019) Odutola, Aderonke; Ota, Martin OC; Antonio, Martin; Ogundare, Ezra O; Saidu, Yauba; Owiafe, Patrick K; Worwui, Archibald; Idoko, Olubukola T; Owolabi, Olumuyiwa; Kampmann, Beate; Greenwood, Brian M; Alderson, Mark; Traskine, Magali; Swinnen, Kristien; Verlant, Vincent; Dobbelaere, Kurt; Borys, Dorota

Hospital-based Surveillance for Pediatric Bacterial Meningitis in the Era of the 13-Valent Pneumococcal Conjugate Vaccine in Ghana. (2019) Renner, Lorna Awo; Usuf, Effua; Mohammed, Nuredin Ibrahim; Ansong, Daniel; Dankwah, Thomas; Kusah, Jonas Tettey; Owusu, Sandra Kwarteng; Awunyo, Marah; Arhin, Bernard; Addo, Yvonne; Asamoah, John; Biey, Joseph Nsiari-Muzeyi; Ndow, Peter Slyvanus; Worwui, Archibald; Senghore, Madikay; Ntsama, Bernard; Mwenda, Jason M; Diamenu, Stanley K; Adams, Brenda Kwanbana; Antonio, Martin

Declining Trends of Pneumococcal Meningitis in Gambian Children After the Introduction of Pneumococcal Conjugate Vaccines. (2019) Sanneh, Bakary; Okoi, Catherine; Grey-Johnson, Mary; Bah-Camara, Haddy; Kunta Fofana, Baba; Baldeh, Ignatius; Papa Sey, Alhagie; Labbo Bah, Mahamadou; Cham, Mamadi; Samateh, Amadou; Usuf, Effua; Ndow, Peter Sylvanus; Senghore, Madikay; Worwui, Archibald; Mwenda, Jason M; Kwambana-Adams, Brenda; Antonio, Martin

Changes in the Molecular Epidemiology of Pediatric Bacterial Meningitis in Senegal After Pneumococcal Conjugate Vaccine Introduction. (2019) Sonko, Mouhamadou A; Dube, Felix S; Okoi, Catherine Bi; Diop, Amadou; Thiongane, Aliou; Senghore, Madikay; Ndow, Peter; Worwui, Archibal; Faye, Papa M; Dieye, Baidy; Ba, Idrissa D; Diallo, Aliou; Boly, Diop; Ndiaye, Ousmane; Cissé, Moussa F; Mwenda, Jason M; Kwambana-Adams, Brenda A; Antonio, Martin

Pediatric Bacterial Meningitis Surveillance in Nigeria From 2010 to 2016, Prior to and During the Phased Introduction of the 10-Valent Pneumococcal Conjugate Vaccine. (2019) Tagbo, Beckie N; Bancroft, Rowan E; Fajolu, Iretiola; Abdulkadir, Mohammed B; Bashir, Muhammad F; Okunola, Olusola P; Isiaka, Ayodeji H; Lawal, Namadi M; Edelu, Benedict O; Onyejiaka, Ngozi; Ihuoma, Chinonyerem J; Ndu, Florence; Ozumba, Uchenna C; Udeinya, Frances; Ogunsola, Folasade; Saka, Aishat O; Fadeyi, Abayomi; Aderibigbe, Sunday A; Abdulraheem, Jimoh; Yusuf, Adamu G; Sylvanus Ndow, Peter; Ogbogu, Philomena; Kanu, Chinomnso; Emina, Velly; Makinwa, Olajumoke J; Gehre, Florian; Yusuf, Kabir; Braka, Fiona; Mwenda, Jason M; Ticha, Johnson M; Nwodo, Dorothy; Worwui, Archibald; Biey, Joseph N; Kwambana-Adams, Brenda A; Antonio, Martin

Etiology of Pediatric Bacterial Meningitis Pre- and Post-PCV13 Introduction Among Children Under 5 Years Old in Lomé, Togo. (2019) Tsolenyanu, Enyonam; Bancroft, Rowan E; Sesay, Abdul K; Senghore, Madikay; Fiawoo, Mawouto; Akolly, Djatougbe; Godonou, Mawussi A; Tsogbale, Novissi; Tigossou, Segla D; Tientcheu, Leopold; Dagnra, Anoumou; Atakouma, Yawo; Sylvanus Ndow, Peter; Worwui, Archibald; Landoh, Dadja E; Mwenda, Jason M; Biey, Joseph N; Ntsama, Bernard; Kwambana-Adams, Brenda A; Antonio, Martin

Colonization factors among enterotoxigenic Escherichia coli isolates from children with moderate-to-severe diarrhea and from matched controls in the Global Enteric Multicenter Study (GEMS). (2019) Vidal, Roberto M; Muhsen, Khitam; Tennant, Sharon M; Svennerholm, Ann-Mari; Sow, Samba O; Sur, Dipika; Zaidi, Anita KM; Faruque, Abu SG; Saha, Debasish; Adegbola, Richard; Hossain, M Jahangir; Alonso, Pedro L; Breiman, Robert F; Bassat, Quique; Tamboura, Boubou; Sanogo, Doh; Onwuchekwa, Uma; Manna, Byomkesh; Ramamurthy, Thandavarayan; Kanungo, Suman; Ahmed, Shahnawaz; Qureshi, Shahida; Quadri, Farheen; Hossain, Anowar; Das, Sumon K; Antonio, Martin; Mandomando, Inacio; Nhampossa, Tacilta; Acácio, Sozinho; Omore, Richard; Ochieng, John B; Oundo, Joseph O; Mintz, Eric D; O'Reilly, Ciara E; Berkeley, Lynette Y; Livio, Sofie; Panchalingam, Sandra; Nasrin, Dilruba; Farag, Tamer H; Wu, Yukun; Sommerfelt, Halvor; Robins-Browne, Roy M; Del Canto, Felipe; Hazen, Tracy H; Rasko, David A; Kotloff, Karen L; Nataro, James P; Levine, Myron M

Ethical Considerations for Movement Mapping to Identify Disease Transmission Hotspots. (2019) de Jong, Bouke C; Gaye, Badou M; Luyten, Jeroen; van Buitenen, Bart; André, Emmanuel; Meehan, Conor J; O'Siochain, Cian; Tomsu, Kristyna; Urbain, Jérôme; Grietens, Koen Peeters; Njue, Maureen; Pinxten, Wim; Gehre, Florian; Nyan, Ousman; Buvé, Anne; Roca, Anna; Ravinetto, Raffaella; Antonio, Martin

Putative novel cps loci in a large global collection of pneumococci. (2019) van Tonder, Andries J; Gladstone, Rebecca A; Lo, Stephanie W; Nahm, Moon H; du Plessis, Mignon; Cornick, Jennifer; Kwambana-Adams, Brenda; Madhi, Shabir A; Hawkins, Paulina A; Benisty, Rachel; Dagan, Ron; Everett, Dean; Antonio, Martin; Klugman, Keith P; von Gottberg, Anne; Breiman, Robert F; McGee, Lesley; Bentley, Stephen D; The Global Pneumococcal Sequencing Consortium

2018

Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci. (2018) Azarian, Taj; Mitchell, Patrick K; Georgieva, Maria; Thompson, Claudette M; Ghouila, Amel; Pollard, Andrew J; von Gottberg, Anne; du Plessis, Mignon; Antonio, Martin; Kwambana-Adams, Brenda A; Clarke, Stuart C; Everett, Dean; Cornick, Jennifer; Sadowy, Ewa; Hryniewicz, Waleria; Skoczynska, Anna; Moïsi, Jennifer C; McGee, Lesley; Beall, Bernard; Metcalf, Benjamin J; Breiman, Robert F; Ho, PL; Reid, Raymond; O'Brien, Katherine L; Gladstone, Rebecca A; Bentley, Stephen D; Hanage, William P

Molecular epidemiological and pathogenesis studies of Streptococcus pneumoniae serotype 1 strains from West Africa. (2018) Ebruke, CN

A cross-sectional study of tuberculosis drug resistance among previously treated patients in a tertiary hospital in Accra, Ghana: public health implications of standardized regimens. (2018) Forson, Audrey; Kwara, Awewura; Kudzawu, Samuel; Omari, Michael; Otu, Jacob; Gehre, Florian; de Jong, Bouke; Antonio, Martin

Using pneumococcal and rotavirus surveillance in vaccine decision-making: A series of case studies in Bangladesh, Armenia and the Gambia. (2018) Hasan, Alvira Z; Saha, Senjuti; Saha, Samir K; Sahakyan, Gayane; Grigoryan, Svetlana; Mwenda, Jason M; Antonio, Martin; Knoll, Maria D; Serhan, Fatima; Cohen, Adam L; Pneumococcal and rotavirus surveillance case study group

Antimicrobial resistance surveillance in Africa: Successes, gaps and a roadmap for the future. (2018) Kariuki, Samuel; Keddy, Karen H; Antonio, Martin; Okeke, Iruka N

Meningococcus serogroup C clonal complex ST-10217 outbreak in Zamfara State, Northern Nigeria. (2018) Kwambana-Adams, Brenda A; Amaza, Rahab C; Okoi, Catherine; Rabiu, Murtala; Worwui, Archibald; Foster-Nyarko, Ebenezer; Ebruke, Bernard; Sesay, Abdul K; Senghore, Madikay; Umar, Abdullahi S; Usman, Rabi; Atiku, Adamu; Abdullahi, Garba; Buhari, Yahaya; Sani, Rabiu; Bako, Husaini U; Abdullahi, Bashir; Yarima, Alliyu I; Sikiru, Badaru; Moses, Aderinola Olaolu; Popoola, Michael O; Ekeng, Eme; Olayinka, Adebola; Mba, Nwando; Kankia, Adamu; Mamadu, Ibrahim N; Okudo, Ifeanyi; Stephen, Mary; Ronveaux, Olivier; Busuttil, Jason; Mwenda, Jason M; Abdulaziz, Mohammed; Gummi, Sulaiman A; Adedeji, Adebayo; Bita, Andre; Omar, Linda; Djingarey, Mamoudou Harouna; Alemu, Wondimagegnehu; D'Alessandro, Umberto; Ihekweazu, Chikwe; Antonio, Martin

Global Distribution of Invasive Serotype 35D Streptococcus pneumoniae Isolates following Introduction of 13-Valent Pneumococcal Conjugate Vaccine. (2018) Lo, Stephanie W; Gladstone, Rebecca A; van Tonder, Andries J; Hawkins, Paulina A; Kwambana-Adams, Brenda; Cornick, Jennifer E; Madhi, Shabir A; Nzenze, Susan A; du Plessis, Mignon; Kandasamy, Rama; Carter, Philip E; Eser, Özgen Köseoglu; Ho, Pak Leung; Elmdaghri, Naima; Shakoor, Sadia; Clarke, Stuart C; Antonio, Martin; Everett, Dean B; von Gottberg, Anne; Klugman, Keith P; McGee, Lesley; Breiman, Robert F; Bentley, Stephen D

Examining human paragonimiasis as a differential diagnosis to tuberculosis in The Gambia. (2018) Morter, Richard; Adetifa, Ifedayo; Antonio, Martin; Touray, Fatima; de Jong, Bouke C; Gower, Charlotte M; Gehre, Florian

Second-line anti-tuberculosis drug resistance testing in Ghana identifies the first extensively drug-resistant tuberculosis case. (2018) Osei-Wusu, Stephen; Amo Omari, Michael; Asante-Poku, Adwoa; Darko Otchere, Isaac; Asare, Prince; Forson, Audrey; Otu, Jacob; Antonio, Martin; Yeboah-Manu, Dorothy

Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches. (2018) Otchere, Isaac Darko; Coscollá, Mireia; Sánchez-Busó, Leonor; Asante-Poku, Adwoa; Brites, Daniela; Loiseau, Chloe; Meehan, Conor; Osei-Wusu, Stephen; Forson, Audrey; Laryea, Clement; Yahayah, Abdallah Iddrisu; Baddoo, Akosua; Ansa, Gloria Akosua; Aboagye, Samuel Yaw; Asare, Prince; Borrell, Sonia; Gehre, Florian; Beckert, Patrick; Kohl, Thomas A; N'dira, Sanoussi; Beisel, Christian; Antonio, Martin; Niemann, Stefan; de Jong, Bouke C; Parkhill, Julian; Harris, Simon R; Gagneux, Sebastien; Yeboah-Manu, Dorothy

Methylation in Mycobacterium tuberculosis is lineage specific with associated mutations present globally. (2018) Phelan, Jody; de Sessions, Paola Florez; Tientcheu, Leopold; Perdigao, Joao; Machado, Diana; Hasan, Rumina; Hasan, Zahra; Bergval, Indra L; Anthony, Richard; McNerney, Ruth; Antonio, Martin; Portugal, Isabel; Viveiros, Miguel; Campino, Susana; Hibberd, Martin L; Clark, Taane G

Evolution of virulent genotypes and an emerging threat of multidrug resistant tuberculosis in Bamako, Mali. (2018) Senghore, M; Diarra, B; Gehre, F; Otu, J; Worwui, A; Muhammad, AK; Sanogo, M; Baya, B; Orsega, S; Doumbia, S; Diallo, S; de Jong, BC; Pallen, MJ; Antonio, M

Publisher Correction: Ancient hybridization and strong adaptation to viruses across African vervet monkey populations. (2018) Svardal, Hannes; Jasinska, Anna J; Apetrei, Cristian; Coppola, Giovanni; Huang, Yu; Schmitt, Christopher A; Jacquelin, Beatrice; Ramensky, Vasily; Müller-Trutwin, Michaela; Antonio, Martin; Weinstock, George; Grobler, J Paul; Dewar, Ken; Wilson, Richard K; Turner, Trudy R; Warren, Wesley C; Freimer, Nelson B; Nordborg, Magnus

2017

Density of Upper Respiratory Colonization With Streptococcus pneumoniae and Its Role in the Diagnosis of Pneumococcal Pneumonia Among Children Aged <5 Years in the PERCH Study. (2017) Baggett, Henry C; Watson, Nora L; Deloria Knoll, Maria; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; Murdoch, David R; Scott, J Anthony G; Thea, Donald M; Antonio, Martin; Awori, Juliet O; Baillie, Vicky L; DeLuca, Andrea N; Driscoll, Amanda J; Duncan, Julie; Ebruke, Bernard E; Goswami, Doli; Higdon, Melissa M; Karron, Ruth A; Moore, David P; Morpeth, Susan C; Mulindwa, Justin M; Park, Daniel E; Paveenkittiporn, Wantana; Piralam, Barameht; Prosperi, Christine; Sow, Samba O; Tapia, Milagritos D; Zaman, Khalequ; Zeger, Scott L; O'Brien, Katherine L; PERCH Study Group

Prevalence and risk factors for Staphylococcus aureus nasopharyngeal carriage during a PCV trial. (2017) Bojang, Abdoulie; Kendall, Lindsay; Usuf, Effua; Egere, Uzochukwu; Mulwa, Sarah; Antonio, Martin; Greenwood, Brian; Hill, Philip C; Roca, Anna

Comparative Genomic Analysis and In Vivo Modeling of Streptococcus pneumoniae ST3081 and ST618 Isolates Reveal Key Genetic and Phenotypic Differences Contributing to Clonal Replacement of Serotype 1 in The Gambia. (2017) Bricio-Moreno, Laura; Ebruke, Chinelo; Chaguza, Chrispin; Cornick, Jennifer; Kwambana-Adams, Brenda; Yang, Marie; Mackenzie, Grant; Wren, Brendan W; Everett, Dean; Antonio, Martin; Kadioglu, Aras

The global distribution and diversity of protein vaccine candidate antigens in the highly virulent Streptococcus pnuemoniae serotype 1. (2017) Cornick, Jennifer E; Tastan Bishop, Özlem; Yalcin, Feyruz; Kiran, Anmol M; Kumwenda, Benjamin; Chaguza, Chrispin; Govindpershad, Shanil; Ousmane, Sani; Senghore, Madikay; du Plessis, Mignon; Pluschke, Gerd; Ebruke, Chinelo; McGee, Lesley; Sigaùque, Beutel; Collard, Jean-Marc; Bentley, Stephen D; Kadioglu, Aras; Antonio, Martin; von Gottberg, Anne; French, Neil; Klugman, Keith P; Heyderman, Robert S; Alderson, Mark; Everett, Dean B; PAGe consortium

Evaluation of Pneumococcal Load in Blood by Polymerase Chain Reaction for the Diagnosis of Pneumococcal Pneumonia in Young Children in the PERCH Study. (2017) Deloria Knoll, Maria; Morpeth, Susan C; Scott, J Anthony G; Watson, Nora L; Park, Daniel E; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; Kotloff, Karen L; Levine, Orin S; O'Brien, Katherine L; Thea, Donald M; Ahmed, Dilruba; Antonio, Martin; Awori, Juliet O; Baillie, Vicky L; Chipeta, James; Deluca, Andrea N; Dione, Michel; Driscoll, Amanda J; Higdon, Melissa M; Jatapai, Anchalee; Karron, Ruth A; Mazumder, Razib; Moore, David P; Mwansa, James; Nyongesa, Sammy; Prosperi, Christine; Seidenberg, Phil; Siludjai, Duangkamon; Sow, Samba O; Tamboura, Boubou; Zeger, Scott L; Murdoch, David R; Madhi, Shabir A; PERCH Study Group

Standardization of Laboratory Methods for the PERCH Study. (2017) Driscoll, Amanda J; Karron, Ruth A; Morpeth, Susan C; Bhat, Niranjan; Levine, Orin S; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; Knoll, Maria Deloria; Kotloff, Karen L; Madhi, Shabir A; Scott, J Anthony G; Thea, Donald M; Adrian, Peter V; Ahmed, Dilruba; Alam, Muntasir; Anderson, Trevor P; Antonio, Martin; Baillie, Vicky L; Dione, Michel; Endtz, Hubert P; Gitahi, Caroline; Karani, Angela; Kwenda, Geoffrey; Maiga, Abdoul Aziz; McClellan, Jessica; Mitchell, Joanne L; Morailane, Palesa; Mugo, Daisy; Mwaba, John; Mwansa, James; Mwarumba, Salim; Nyongesa, Sammy; Panchalingam, Sandra; Rahman, Mustafizur; Sawatwong, Pongpun; Tamboura, Boubou; Toure, Aliou; Whistler, Toni; O'Brien, Katherine L; Murdoch, David R

Is Higher Viral Load in the Upper Respiratory Tract Associated With Severe Pneumonia? Findings From the PERCH Study. (2017) Feikin, Daniel R; Fu, Wei; Park, Daniel E; Shi, Qiyuan; Higdon, Melissa M; Baggett, Henry C; Brooks, W Abdullah; Deloria Knoll, Maria; Hammitt, Laura L; Howie, Stephen RC; Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; Scott, J Anthony G; Thea, Donald M; Adrian, Peter V; Antonio, Martin; Awori, Juliet O; Baillie, Vicky L; DeLuca, Andrea N; Driscoll, Amanda J; Ebruke, Bernard E; Goswami, Doli; Karron, Ruth A; Li, Mengying; Morpeth, Susan C; Mwaba, John; Mwansa, James; Prosperi, Christine; Sawatwong, Pongpun; Sow, Samba O; Tapia, Milagritos D; Whistler, Toni; Zaman, Khalequ; Zeger, Scott L; O' Brien, Katherine L; Murdoch, David R; PERCH Study Group

Incidence of macrolide-lincosamide-streptogramin B resistance amongst beta-haemolytic streptococci in The Gambia. (2017) Foster-Nyarko, Ebenezer; Kwambana, Brenda; Ceesay, Fatima; Jawneh, Kaddijatou; Darboe, Saffiatou; Mulwa, Sarah N; Ceesay, Buntung; Secka, Ousman O; Adetifa, Ifedayo; Antonio, Martin

Identification of Subsets of Enteroaggregative Escherichia coli Associated with Diarrheal Disease among Under 5 Years of Age Children from Rural Gambia. (2017) Ikumapayi, Usman N; Boisen, Nadia; Hossain, Mohammad J; Betts, Modupeh; Lamin, Modou; Saha, Debasish; Kwambana-Adams, Brenda; Dione, Michel; Adegbola, Richard A; Roca, Anna; Nataro, James P; Antonio, Martin

Rapid replacement by non-vaccine pneumococcal serotypes may mitigate the impact of the pneumococcal conjugate vaccine on nasopharyngeal bacterial ecology. (2017) Kwambana-Adams, Brenda; Hanson, Blake; Worwui, Archibald; Agbla, Schadrac; Foster-Nyarko, Ebenezer; Ceesay, Fatima; Ebruke, Chinelo; Egere, Uzochukwu; Zhou, Yanjiao; Ndukum, Maze; Sodergren, Erica; Barer, Michael; Adegbola, Richard; Weinstock, George; Antonio, Martin

Association between functional antibody against Group B Streptococcus and maternal and infant colonization in a Gambian cohort. (2017) Le Doare, Kirsty; Faal, Amadou; Jaiteh, Mustapha; Sarfo, Francess; Taylor, Stephen; Warburton, Fiona; Humphries, Holly; Birt, Jessica; Jarju, Sheikh; Darboe, Saffiatou; Clarke, Edward; Antonio, Martin; Foster-Nyarko, Ebenezer; Heath, Paul T; Gorringe, Andrew; Kampmann, Beate

Impact of the introduction of pneumococcal conjugate vaccination on pneumonia in The Gambia: population-based surveillance and case-control studies. (2017) Mackenzie, Grant A; Hill, Philip C; Sahito, Shah M; Jeffries, David J; Hossain, Ilias; Bottomley, Christian; Uchendu, Uchendu; Ameh, David; Ndiaye, Malick; Osuorah, Chidebereh D; Adeyemi, Oyedeji; Pathirana, Jayani; Olatunji, Yekini; Abatan, Bade; Ahameefula, Ebirim; Muhammad, Bilquees S; Fombah, Augustin E; Saha, Debasish; Mackenzie, Roslyn; Plumb, Ian; Akano, Aliu; Ebruke, Bernard; Ideh, Readon C; Kuti, Bankole; Githua, Peter; Olutunde, Emmanuel; Ofordile, Ogochukwu; Green, Edward; Usuf, Effua; Badji, Henry; Ikumapayi, Usman NA; Manjang, Ahmad; Salaudeen, Rasheed; Nsekpong, E David; Jarju, Sheikh; Antonio, Martin; Sambou, Sana; Ceesay, Lamin; Lowe-Jallow, Yamundow; Sowe, Dawda; Jasseh, Momodou; Mulholland, Kim; Knoll, Maria; Levine, Orin S; Howie, Stephen R; Adegbola, Richard A; Greenwood, Brian M; Corrah, Tumani

Kinetics of antibodies against pneumococcal proteins and their relationship to nasopharyngeal carriage in the first two months of life. (2017) Mendy, Awa L; Agbla, Schadrac C; Odutola, Aderonke A; Antonio, Martin; Greenwood, Brian M; Sutherland, Jayne S; Ota, Martin OC

Detection of Pneumococcal DNA in Blood by Polymerase Chain Reaction for Diagnosing Pneumococcal Pneumonia in Young Children From Low- and Middle-Income Countries. (2017) Morpeth, Susan C; Deloria Knoll, Maria; Scott, J Anthony G; Park, Daniel E; Watson, Nora L; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; O'Brien, Katherine L; Thea, Donald M; Adrian, Peter V; Ahmed, Dilruba; Antonio, Martin; Bunthi, Charatdao; DeLuca, Andrea N; Driscoll, Amanda J; Githua, Louis Peter; Higdon, Melissa M; Kahn, Geoff; Karani, Angela; Karron, Ruth A; Kwenda, Geoffrey; Makprasert, Sirirat; Mazumder, Razib; Moore, David P; Mwansa, James; Nyongesa, Sammy; Prosperi, Christine; Sow, Samba O; Tamboura, Boubou; Whistler, Toni; Zeger, Scott L; Murdoch, David R; PERCH Study Group

Large Outbreak of Neisseria meningitidis Serogroup C - Nigeria, December 2016-June 2017. (2017) Nnadi, Chimeremma; Oladejo, John; Yennan, Sebastian; Ogunleye, Adesola; Agbai, Chidinma; Bakare, Lawal; Abdulaziz, Mohammed; Mohammed, Amina; Stephens, Mary; Sumaili, Kyadindi; Ronveaux, Olivier; Maguire, Helen; Karch, Debra; Dalhat, Mahmood; Antonio, Martin; Bita, Andre; Okudo, Ifeanyi; Nguku, Patrick; Novak, Ryan; Bolu, Omotayo; Shuaib, Faisal; Ihekweazu, Chikwe

Efficacy of a novel, protein-based pneumococcal vaccine against nasopharyngeal carriage of Streptococcus pneumoniae in infants: A phase 2, randomized, controlled, observer-blind study. (2017) Odutola, Aderonke; Ota, Martin OC; Antonio, Martin; Ogundare, Ezra O; Saidu, Yauba; Foster-Nyarko, Ebenezer; Owiafe, Patrick K; Ceesay, Fatima; Worwui, Archibald; Idoko, Olubukola T; Owolabi, Olumuyiwa; Bojang, Abdoulie; Jarju, Sheikh; Drammeh, Isatou; Kampmann, Beate; Greenwood, Brian M; Alderson, Mark; Traskine, Magali; Devos, Nathalie; Schoonbroodt, Sonia; Swinnen, Kristien; Verlant, Vincent; Dobbelaere, Kurt; Borys, Dorota

Significant under expression of the DosR regulon in M. tuberculosis complex lineage 6 in sputum. (2017) Ofori-Anyinam, Boatema; Dolganov, Gregory; Van, Tran; Davis, J Lucian; Walter, Nicholas D; Garcia, Benjamin J; Voskuil, Marty; Fissette, Kristina; Diels, Maren; Driesen, Michèle; Meehan, Conor J; Yeboah-Manu, Dorothy; Coscolla, Mireia; Gagneux, Sebastien; Antonio, Martin; Schoolnik, Gary; Gehre, Florian; de Jong, Bouke C

Non-tuberculous Mycobacteria isolated from Pulmonary samples in sub-Saharan Africa - A Systematic Review and Meta Analyses. (2017) Okoi, Catherine; Anderson, Suzanne TB; Antonio, Martin; Mulwa, Sarah N; Gehre, Florian; Adetifa, Ifedayo MO

Colonization Density of the Upper Respiratory Tract as a Predictor of Pneumonia-Haemophilus influenzae, Moraxella catarrhalis, Staphylococcus aureus, and Pneumocystis jirovecii. (2017) Park, Daniel E; Baggett, Henry C; Howie, Stephen RC; Shi, Qiyuan; Watson, Nora L; Brooks, W Abdullah; Deloria Knoll, Maria; Hammitt, Laura L; Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; Murdoch, David R; O'Brien, Katherine L; Scott, J Anthony G; Thea, Donald M; Ahmed, Dilruba; Antonio, Martin; Baillie, Vicky L; DeLuca, Andrea N; Driscoll, Amanda J; Fu, Wei; Gitahi, Caroline W; Olutunde, Emmanuel; Higdon, Melissa M; Hossain, Lokman; Karron, Ruth A; Maiga, Abdoul Aziz; Maloney, Susan A; Moore, David P; Morpeth, Susan C; Mwaba, John; Mwenechanya, Musaku; Prosperi, Christine; Sylla, Mamadou; Thamthitiwat, Somsak; Zeger, Scott L; Feikin, Daniel R; PERCH Study Group

Whole-genome sequencing illuminates the evolution and spread of multidrug-resistant tuberculosis in Southwest Nigeria. (2017) Senghore, Madikay; Otu, Jacob; Witney, Adam; Gehre, Florian; Doughty, Emma L; Kay, Gemma L; Butcher, Phillip; Salako, Kayode; Kehinde, Aderemi; Onyejepu, Nneka; Idigbe, Emmanuel; Corrah, Tumani; de Jong, Bouke; Pallen, Mark J; Antonio, Martin

Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in young children in 2015: a systematic review and modelling study. (2017) Shi, Ting; McAllister, David A; O'Brien, Katherine L; Simoes, Eric AF; Madhi, Shabir A; Gessner, Bradford D; Polack, Fernando P; Balsells, Evelyn; Acacio, Sozinho; Aguayo, Claudia; Alassani, Issifou; Ali, Asad; Antonio, Martin; Awasthi, Shally; Awori, Juliet O; Azziz-Baumgartner, Eduardo; Baggett, Henry C; Baillie, Vicky L; Balmaseda, Angel; Barahona, Alfredo; Basnet, Sudha; Bassat, Quique; Basualdo, Wilma; Bigogo, Godfrey; Bont, Louis; Breiman, Robert F; Brooks, W Abdullah; Broor, Shobha; Bruce, Nigel; Bruden, Dana; Buchy, Philippe; Campbell, Stuart; Carosone-Link, Phyllis; Chadha, Mandeep; Chipeta, James; Chou, Monidarin; Clara, Wilfrido; Cohen, Cheryl; de Cuellar, Elizabeth; Dang, Duc-Anh; Dash-Yandag, Budragchaagiin; Deloria-Knoll, Maria; Dherani, Mukesh; Eap, Tekchheng; Ebruke, Bernard E; Echavarria, Marcela; de Freitas Lázaro Emediato, Carla Cecília; Fasce, Rodrigo A; Feikin, Daniel R; Feng, Luzhao; Gentile, Angela; Gordon, Aubree; Goswami, Doli; Goyet, Sophie; Groome, Michelle; Halasa, Natasha; Hirve, Siddhivinayak; Homaira, Nusrat; Howie, Stephen RC; Jara, Jorge; Jroundi, Imane; Kartasasmita, Cissy B; Khuri-Bulos, Najwa; Kotloff, Karen L; Krishnan, Anand; Libster, Romina; Lopez, Olga; Lucero, Marilla G; Lucion, Florencia; Lupisan, Socorro P; Marcone, Debora N; McCracken, John P; Mejia, Mario; Moisi, Jennifer C; Montgomery, Joel M; Moore, David P; Moraleda, Cinta; Moyes, Jocelyn; Munywoki, Patrick; Mutyara, Kuswandewi; Nicol, Mark P; Nokes, D James; Nymadawa, Pagbajabyn; da Costa Oliveira, Maria Tereza; Oshitani, Histoshi; Pandey, Nitin; Paranhos-Baccalà, Gláucia; Phillips, Lia N; Picot, Valentina Sanchez; Rahman, Mustafizur; Rakoto-Andrianarivelo, Mala; Rasmussen, Zeba A; Rath, Barbara A; Robinson, Annick; Romero, Candice; Russomando, Graciela; Salimi, Vahid; Sawatwong, Pongpun; Scheltema, Nienke; Schweiger, Brunhilde; Scott, J Anthony G; Seidenberg, Phil; Shen, Kunling; Singleton, Rosalyn; Sotomayor, Viviana; Strand, Tor A; Sutanto, Agustinus; Sylla, Mariam; Tapia, Milagritos D; Thamthitiwat, Somsak; Thomas, Elizabeth D; Tokarz, Rafal; Turner, Claudia; Venter, Marietjie; Waicharoen, Sunthareeya; Wang, Jianwei; Watthanaworawit, Wanitda; Yoshida, Lay-Myint; Yu, Hongjie; Zar, Heather J; Campbell, Harry; Nair, Harish; RSV Global Epidemiology Network

Ancient hybridization and strong adaptation to viruses across African vervet monkey populations. (2017) Svardal, Hannes; Jasinska, Anna J; Apetrei, Cristian; Coppola, Giovanni; Huang, Yu; Schmitt, Christopher A; Jacquelin, Beatrice; Ramensky, Vasily; Müller-Trutwin, Michaela; Antonio, Martin; Weinstock, George; Grobler, J Paul; Dewar, Ken; Wilson, Richard K; Turner, Trudy R; Warren, Wesley C; Freimer, Nelson B; Nordborg, Magnus

Limited Utility of Polymerase Chain Reaction in Induced Sputum Specimens for Determining the Causes of Childhood Pneumonia in Resource-Poor Settings: Findings From the Pneumonia Etiology Research for Child Health (PERCH) Study. (2017) Thea, Donald M; Seidenberg, Phil; Park, Daniel E; Mwananyanda, Lawrence; Fu, Wei; Shi, Qiyuan; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Howie, Stephen RC; Knoll, Maria Deloria; Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; O'Brien, Katherine L; Scott, J Anthony G; Antonio, Martin; Awori, Juliet O; Baillie, Vicky L; DeLuca, Andrea N; Driscoll, Amanda J; Higdon, Melissa M; Hossain, Lokman; Jahan, Yasmin; Karron, Ruth A; Kazungu, Sidi; Li, Mengying; Moore, David P; Morpeth, Susan C; Ofordile, Ogochukwu; Prosperi, Christine; Sangwichian, Ornuma; Sawatwong, Pongpun; Sylla, Mamadou; Tapia, Milagritos D; Zeger, Scott L; Murdoch, David R; Hammitt, Laura L; PERCH Study Group

2016

A tuberculosis nationwide prevalence survey in Gambia, 2012. (2016) Adetifa, Ifedayo Mo; Kendall, Lindsay; Bashorun, Adedapo; Linda, Christopher; Omoleke, Semeeh; Jeffries, David; Maane, Rahmatulai; Alorse, Beatrice Dei; Alorse, William Dei; Okoi, Catherine Bi; Mlaga, Kodjovi D; Kinteh, Ma Ansu; Donkor, Simon; de Jong, Bouke C; Antonio, Martin; d'Alessandro, Umberto

Population structure, epidemiology and antibiotic resistance patterns of Streptococcus pneumoniae serotype 5: prior to PCV-13 vaccine introduction in Eastern Gambia. (2016) Ashu, Eta E; Jarju, Sheikh; Dione, Michel; Mackenzie, Grant; Ikumapayi, Usman N; Manjang, Ahmed; Azuine, Romuladus; Antonio, Martin

Understanding pneumococcal serotype 1 biology through population genomic analysis. (2016) Chaguza, Chrispin; Cornick, Jennifer E; Harris, Simon R; Andam, Cheryl P; Bricio-Moreno, Laura; Yang, Marie; Yalcin, Feyruz; Ousmane, Sani; Govindpersad, Shanil; Senghore, Madikay; Ebruke, Chinelo; Du Plessis, Mignon; Kiran, Anmol M; Pluschke, Gerd; Sigauque, Betuel; McGee, Lesley; Klugman, Keith P; Turner, Paul; Corander, Jukka; Parkhill, Julian; Collard, Jean-Marc; Antonio, Martin; von Gottberg, Anne; Heyderman, Robert S; French, Neil; Kadioglu, Aras; Hanage, William P; Everett, Dean B; Bentley, Stephen D; PAGe Consortium

Tuberculosis drug resistance in Bamako, Mali, from 2006 to 2014. (2016) Diarra, B; Goita, D; Tounkara, S; Sanogo, M; Baya, B; Togo, ACG; Maiga, M; Sarro, YS; Kone, A; Kone, B; M'Baye, O; Coulibaly, N; Kassambara, H; Cisse, A; Belson, M; Polis, MA; Otu, J; Gehre, F; Antonio, M; Dao, S; Siddiqui, S; Murphy, RL; de Jong, BC; Diallo, S

High genetic diversity of Staphylococcus aureus strains colonising the nasopharynx of Gambian villagers before widespread use of pneumococcal conjugate vaccines. (2016) Ebruke, Chinelo; Dione, Michel M; Walter, Brigitte; Worwui, Archibald; Adegbola, Richard A; Roca, Anna; Antonio, Martin

Associations between nasopharyngeal carriage of Group B Streptococcus and other respiratory pathogens during early infancy. (2016) Foster-Nyarko, Ebenezer; Kwambana, Brenda; Aderonke, Odutola; Ceesay, Fatima; Jarju, Sheikh; Bojang, Abdoulie; McLellan, Jessica; Jafali, James; Kampmann, Beate; Ota, Martin O; Adetifa, Ifedayo; Antonio, Martin

A Mycobacterial Perspective on Tuberculosis in West Africa: Significant Geographical Variation of M. africanum and Other M. tuberculosis Complex Lineages. (2016) Gehre, Florian; Kumar, Samrat; Kendall, Lindsay; Ejo, Mebrat; Secka, Oumie; Ofori-Anyinam, Boatema; Abatih, Emmanuel; Antonio, Martin; Berkvens, Dirk; de Jong, Bouke C

The emerging threat of pre-extensively drug-resistant tuberculosis in West Africa: preparing for large-scale tuberculosis research and drug resistance surveillance. (2016) Gehre, Florian; Otu, Jacob; Kendall, Lindsay; Forson, Audrey; Kwara, Awewura; Kudzawu, Samuel; Kehinde, Aderemi O; Adebiyi, Oludele; Salako, Kayode; Baldeh, Ignatius; Jallow, Aisha; Jallow, Mamadou; Dagnra, Anoumou; Dissé, Kodjo; Kadanga, Essosimna A; Idigbe, Emmanuel Oni; Onubogu, Catherine; Onyejepu, Nneka; Gaye-Diallo, Aissatou; Ba-Diallo, Awa; Rabna, Paulo; Mane, Morto; Sanogo, Moumine; Diarra, Bassirou; Dezemon, Zingue; Sanou, Adama; Senghore, Madikay; Kwambana-Adams, Brenda A; Demba, Edward; Faal-Jawara, Tutty; Kumar, Samrat; Tientcheu, Leopold D; Jallow, Adama; Ceesay, Samba; Adetifa, Ifedayo; Jaye, Assan; Pallen, Mark J; D'Alessandro, Umberto; Kampmann, Beate; Adegbola, Richard A; Mboup, Souleymane; Corrah, Tumani; de Jong, Bouke C; Antonio, Martin

Evaluation of the Kudoh method for mycobacterial culture: Gambia experience. (2016) Jobarteh, Tijan; Otu, Jacob; Gitteh, Ensa; Mendy, Francis; Faal-Jawara, Tutty I; Ofori-Anyinam, Boatema; Ayorinde, Abigail; Secka, Ousman; Antonio, Martin; Gehre, Florian

An outbreak of pneumococcal meningitis among older children (≥5 years) and adults after the implementation of an infant vaccination programme with the 13-valent pneumococcal conjugate vaccine in Ghana. (2016) Kwambana-Adams, Brenda Anna; Asiedu-Bekoe, Franklin; Sarkodie, Badu; Afreh, Osei Kuffour; Kuma, George Khumalo; Owusu-Okyere, Godfred; Foster-Nyarko, Ebenezer; Ohene, Sally-Ann; Okot, Charles; Worwui, Archibald Kwame; Okoi, Catherine; Senghore, Madikay; Otu, Jacob Kweku; Ebruke, Chinelo; Bannerman, Richard; Amponsa-Achiano, Kwame; Opare, David; Kay, Gemma; Letsa, Timothy; Kaluwa, Owen; Appiah-Denkyira, Ebenezer; Bampoe, Victor; Zaman, Syed MA; Pallen, Mark J; D'Alessandro, Umberto; Mwenda, Jason M; Antonio, Martin

Use of quantitative molecular diagnostic methods to identify causes of diarrhoea in children: a reanalysis of the GEMS case-control study. (2016) Liu, Jie; Platts-Mills, James A; Juma, Jane; Kabir, Furqan; Nkeze, Joseph; Okoi, Catherine; Operario, Darwin J; Uddin, Jashim; Ahmed, Shahnawaz; Alonso, Pedro L; Antonio, Martin; Becker, Stephen M; Blackwelder, William C; Breiman, Robert F; Faruque, Abu SG; Fields, Barry; Gratz, Jean; Haque, Rashidul; Hossain, Anowar; Hossain, M Jahangir; Jarju, Sheikh; Qamar, Farah; Iqbal, Najeeha Talat; Kwambana, Brenda; Mandomando, Inacio; McMurry, Timothy L; Ochieng, Caroline; Ochieng, John B; Ochieng, Melvin; Onyango, Clayton; Panchalingam, Sandra; Kalam, Adil; Aziz, Fatima; Qureshi, Shahida; Ramamurthy, Thandavarayan; Roberts, James H; Saha, Debasish; Sow, Samba O; Stroup, Suzanne E; Sur, Dipika; Tamboura, Boubou; Taniuchi, Mami; Tennant, Sharon M; Toema, Deanna; Wu, Yukun; Zaidi, Anita; Nataro, James P; Kotloff, Karen L; Levine, Myron M; Houpt, Eric R

Effect of the introduction of pneumococcal conjugate vaccination on invasive pneumococcal disease in The Gambia: a population-based surveillance study. (2016) Mackenzie, Grant A; Hill, Philip C; Jeffries, David J; Hossain, Ilias; Uchendu, Uchendu; Ameh, David; Ndiaye, Malick; Adeyemi, Oyedeji; Pathirana, Jayani; Olatunji, Yekini; Abatan, Bade; Muhammad, Bilquees S; Fombah, Augustin E; Saha, Debasish; Plumb, Ian; Akano, Aliu; Ebruke, Bernard; Ideh, Readon C; Kuti, Bankole; Githua, Peter; Olutunde, Emmanuel; Ofordile, Ogochukwu; Green, Edward; Usuf, Effua; Badji, Henry; Ikumapayi, Usman NA; Manjang, Ahmad; Salaudeen, Rasheed; Nsekpong, E David; Jarju, Sheikh; Antonio, Martin; Sambou, Sana; Ceesay, Lamin; Lowe-Jallow, Yamundow; Jasseh, Momodou; Mulholland, Kim; Knoll, Maria; Levine, Orin S; Howie, Stephen R; Adegbola, Richard A; Greenwood, Brian M; Corrah, Tumani

Alternative Molecular Methods for Improved Detection of Meningococcal Carriage and Measurement of Bacterial Density. (2016) Manigart, Olivier; Okeakpu, Jacinta; Odutola, Aderonke; Jarju, Sheikh; Foster-Nyarko, Ebenezer; Diallo, Kanny; Roca, Anna; Kampmann, Beate; D'Alessandro, Umberto; Sow, Samba; Antonio, Martin; Maiden, Martin J; Borrow, Ray; Stuart, James M; Trotter, Caroline L; Greenwood, Brian M

Reactogenicity, safety and immunogenicity of a protein-based pneumococcal vaccine in Gambian children aged 2-4 years: A phase II randomized study. (2016) Odutola, A; Ota, MO; Ogundare, EO; Antonio, M; Owiafe, P; Worwui, A; Greenwood, B; Alderson, M; Traskine, M; Verlant, V; Dobbelaere, K; Borys, D

Impact of the Mycobaterium africanum West Africa 2 Lineage on TB Diagnostics in West Africa: Decreased Sensitivity of Rapid Identification Tests in The Gambia. (2016) Ofori-Anyinam, Boatema; Kanuteh, Fatoumatta; Agbla, Schadrac C; Adetifa, Ifedayo; Okoi, Catherine; Dolganov, Gregory; Schoolnik, Gary; Secka, Ousman; Antonio, Martin; de Jong, Bouke C; Gehre, Florian

Aeromonas-Associated Diarrhea in Children Under 5 Years: The GEMS Experience. (2016) Qamar, Farah Naz; Nisar, Muhammad Imran; Quadri, Farheen; Shakoor, Sadia; Sow, Samba O; Nasrin, Dilruba; Blackwelder, William C; Wu, Yukun; Farag, Tamer; Panchalingham, Sandra; Sur, Dipika; Qureshi, Shahida; Faruque, Abu SG; Saha, Debasish; Alonso, Pedro L; Breiman, Robert F; Bassat, Quique; Tamboura, Boubou; Ramamurthy, Thandavarayan; Kanungo, Suman; Ahmed, Shahnawaz; Hossain, Anowar; Das, Sumon K; Antonio, Martin; Hossain, M Jahangir; Mandomando, Inacio; Tennant, Sharon M; Kotloff, Karen L; Levine, Myron M; Zaidi, Anita KM

Transmission of Staphylococcus aureus from Humans to Green Monkeys in The Gambia as Revealed by Whole-Genome Sequencing. (2016) Senghore, Madikay; Bayliss, Sion C; Kwambana-Adams, Brenda A; Foster-Nyarko, Ebenezer; Manneh, Jainaba; Dione, Michel; Badji, Henry; Ebruke, Chinelo; Doughty, Emma L; Thorpe, Harry A; Jasinska, Anna J; Schmitt, Christopher A; Cramer, Jennifer D; Turner, Trudy R; Weinstock, George; Freimer, Nelson B; Pallen, Mark J; Feil, Edward J; Antonio, Martin

The Burden of Cryptosporidium Diarrheal Disease among Children < 24 Months of Age in Moderate/High Mortality Regions of Sub-Saharan Africa and South Asia, Utilizing Data from the Global Enteric Multicenter Study (GEMS). (2016) Sow, Samba O; Muhsen, Khitam; Nasrin, Dilruba; Blackwelder, William C; Wu, Yukun; Farag, Tamer H; Panchalingam, Sandra; Sur, Dipika; Zaidi, Anita KM; Faruque, Abu SG; Saha, Debasish; Adegbola, Richard; Alonso, Pedro L; Breiman, Robert F; Bassat, Quique; Tamboura, Boubou; Sanogo, Doh; Onwuchekwa, Uma; Manna, Byomkesh; Ramamurthy, Thandavarayan; Kanungo, Suman; Ahmed, Shahnawaz; Qureshi, Shahida; Quadri, Farheen; Hossain, Anowar; Das, Sumon K; Antonio, Martin; Hossain, M Jahangir; Mandomando, Inacio; Nhampossa, Tacilta; Acácio, Sozinho; Omore, Richard; Oundo, Joseph O; Ochieng, John B; Mintz, Eric D; O'Reilly, Ciara E; Berkeley, Lynette Y; Livio, Sofie; Tennant, Sharon M; Sommerfelt, Halvor; Nataro, James P; Ziv-Baran, Tomer; Robins-Browne, Roy M; Mishcherkin, Vladimir; Zhang, Jixian; Liu, Jie; Houpt, Eric R; Kotloff, Karen L; Levine, Myron M

Association of slow recovery of Mycobacterium africanum-infected patients posttreatment with high content of Persister-Like bacilli in pretreatment sputum. (2016) Tientcheu, Leopold D; Bell, Andrew; Secka, Oumie; Ayorinde, Abigail; Otu, Jacob; Garton, Nathalie J; Sutherland, Jayne S; Ota, Martin O; Antonio, Martin; Dockrell, HM; Kampmann, Beate; Barer, Michael R

Host Immune Responses Differ between M. africanum- and M. tuberculosis-Infected Patients following Standard Anti-tuberculosis Treatment. (2016) Tientcheu, Leopold D; Haks, Mariëlle C; Agbla, Schadrac C; Sutherland, Jayne S; Adetifa, Ifedayo M; Donkor, Simon; Quinten, Edwin; Daramy, Mohammed; Antonio, Martin; Kampmann, Beate; Ottenhoff, Tom HM; Dockrell, Hazel M; Ota, Martin O

2015

Seasonality of Pneumococcal Nasopharyngeal Carriage in Rural Gambia Determined within the Context of a Cluster Randomized Pneumococcal Vaccine Trial. (2015) Bojang, Abdoulie; Jafali, James; Egere, Uzochukwu E; Hill, Phillip C; Antonio, Martin; Jeffries, David; Greenwood, Brian M; Roca, Anna

The impact of childhood vaccines on bacterial carriage in the nasopharynx: a longitudinal study. (2015) Bottomley, Christian; Bojang, Abdoulie; Smith, Peter G; Darboe, Ousainou; Antonio, Martin; Foster-Nyarko, Ebenezer; Kampmann, Beate; Greenwood, Brian; D'Alessandro, Umberto; Roca, Anna

Bacterial Factors Associated with Lethal Outcome of Enteropathogenic Escherichia coli Infection: Genomic Case-Control Studies. (2015) Donnenberg, Michael S; Hazen, Tracy H; Farag, Tamer H; Panchalingam, Sandra; Antonio, Martin; Hossain, Anowar; Mandomando, Inacio; Ochieng, John Benjamin; Ramamurthy, Thandavarayan; Tamboura, Boubou; Zaidi, Anita; Levine, Myron M; Kotloff, Karen; Rasko, David A; Nataro, James P

Temporal changes in nasopharyngeal carriage of Streptococcus pneumoniae serotype 1 genotypes in healthy Gambians before and after the 7-valent pneumococcal conjugate vaccine. (2015) Ebruke, Chinelo; Roca, Anna; Egere, Uzochukwu; Darboe, Ousainou; Hill, Philip C; Greenwood, Brian; Wren, Brendan W; Adegbola, Richard A; Antonio, Martin

Salmonella Infections in The Gambia, 2005-2015. (2015) Kwambana-Adams, Brenda; Darboe, Saffiatou; Nabwera, Helen; Foster-Nyarko, Ebenezer; Ikumapayi, Usman N; Secka, Ousman; Betts, Modupeh; Bradbury, Richard; Wegmüller, Rita; Lawal, Bolarinde; Saha, Debasish; Hossain, M Jahangir; Prentice, Andrew M; Kampmann, Beate; Anderson, Suzanne; Dalessandro, Umberto; Antonio, Martin

Microbiota that affect risk for shigellosis in children in low-income countries. (2015) Lindsay, Brianna; Oundo, Joe; Hossain, M Anowar; Antonio, Martin; Tamboura, Boubou; Walker, Alan W; Paulson, Joseph N; Parkhill, Julian; Omore, Richard; Faruque, Abu SG; Das, Suman Kumar; Ikumapayi, Usman N; Adeyemi, Mitchell; Sanogo, Doh; Saha, Debasish; Sow, Samba; Farag, Tamer H; Nasrin, Dilruba; Li, Shan; Panchalingam, Sandra; Levine, Myron M; Kotloff, Karen; Magder, Laurence S; Hungerford, Laura; Sommerfelt, Halvor; Pop, Mihai; Nataro, James P; Stine, O Colin

Increased disease due to Haemophilus influenzae type b: population-based surveillance in eastern Gambia, 2008-2013. (2015) Mackenzie, Grant A; Ikumapayi, Usman NA; Scott, Susana; Idoko, Olubukola; Odutola, Aderonke; Ndiaye, Malick; Sahito, Shah M; Osuorah, Chidiebereh D; Manjang, Ahmed; Jarju, Sheikh; Bojang, Abdoulie; Roca, Anna; Secka, Ousman; Zaman, Akram; Ceesay, Lamin; Lowe-Jallow, Yamundow; Sambou, Sana; Jasseh, Momodou; Antonio, Martin; Greenwood, Brian; Kampmann, Beate; Mulholland, Kim; Corrah, Tumani; Howie, Stephen RC

Prevalence of classic, MLB-clade and VA-clade Astroviruses in Kenya and The Gambia. (2015) Meyer, Caroline T; Bauer, Irma K; Antonio, Martin; Adeyemi, Mitchell; Saha, Debasish; Oundo, Joseph O; Ochieng, John B; Omore, Richard; Stine, O Colin; Wang, David; Holtz, Lori R

Effect on nasopharyngeal pneumococcal carriage of replacing PCV7 with PCV13 in the Expanded Programme of Immunization in The Gambia. (2015) Roca, Anna; Bojang, Abdoulie; Bottomley, Christian; Gladstone, Rebecca A; Adetifa, Jane U; Egere, Uzochukwu; Burr, Sarah; Antonio, Martin; Bentley, Stephen; Kampmann, Beate; Pneumo13 Study Group

Pneumococcal carriage in rural Gambia prior to the introduction of pneumococcal conjugate vaccine: a population-based survey. (2015) Usuf, Effua; Badji, Henry; Bojang, Abdoulie; Jarju, Sheikh; Ikumapayi, Usman Nurudeen; Antonio, Martin; Mackenzie, Grant; Bottomley, Christian

2014

Shifts in Mycobacterial Populations and Emerging Drug-Resistance in West and Central Africa. (2014) Gehre, Florian; Ejo, Mebrat; Fissette, Kristina; de Rijk, Pim; Uwizeye, Cécile; Nduwamahoro, Elie; Goovaerts, Odin; Affolabi, Dissou; Gninafon, Martin; Lingoupou, Fanny M; Barry, Mamadou Dian; Sow, Oumou; Merle, Corinne; Olliaro, Piero; Ba, Fatoumata; Sarr, Marie; Piubello, Alberto; Noeske, Juergen; Antonio, Martin; Rigouts, Leen; de Jong, Bouke C

Etiology of severe childhood pneumonia in the Gambia, West Africa, determined by conventional and molecular microbiological analyses of lung and pleural aspirate samples. (2014) Howie, Stephen RC; Morris, Gerard AJ; Tokarz, Rafal; Ebruke, Bernard E; Machuka, Eunice M; Ideh, Readon C; Chimah, Osaretin; Secka, Ousman; Townend, John; Dione, Michel; Oluwalana, Claire; Njie, Malick; Jallow, Mariatou; Hill, Philip C; Antonio, Martin; Greenwood, Brian; Briese, Thomas; Mulholland, Kim; Corrah, Tumani; Lipkin, W Ian; Adegbola, Richard A

Shigella isolates from the global enteric multicenter study inform vaccine development. (2014) Livio, Sofie; Strockbine, Nancy A; Panchalingam, Sandra; Tennant, Sharon M; Barry, Eileen M; Marohn, Mark E; Antonio, Martin; Hossain, Anowar; Mandomando, Inacio; Ochieng, John B; Oundo, Joseph O; Qureshi, Shahida; Ramamurthy, Thandavarayan; Tamboura, Boubou; Adegbola, Richard A; Hossain, Mohammed Jahangir; Saha, Debasish; Sen, Sunil; Faruque, Abu Syed Golam; Alonso, Pedro L; Breiman, Robert F; Zaidi, Anita KM; Sur, Dipika; Sow, Samba O; Berkeley, Lynette Y; O'Reilly, Ciara E; Mintz, Eric D; Biswas, Kousick; Cohen, Dani; Farag, Tamer H; Nasrin, Dilruba; Wu, Yukun; Blackwelder, William C; Kotloff, Karen L; Nataro, James P; Levine, Myron M

Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition. (2014) Pop, Mihai; Walker, Alan W; Paulson, Joseph; Lindsay, Brianna; Antonio, Martin; Hossain, M Anowar; Oundo, Joseph; Tamboura, Boubou; Mai, Volker; Astrovskaya, Irina; Corrada Bravo, Hector; Rance, Richard; Stares, Mark; Levine, Myron M; Panchalingam, Sandra; Kotloff, Karen; Ikumapayi, Usman N; Ebruke, Chinelo; Adeyemi, Mitchell; Ahmed, Dilruba; Ahmed, Firoz; Alam, Meer Taifur; Amin, Ruhul; Siddiqui, Sabbir; Ochieng, John B; Ouma, Emmanuel; Juma, Jane; Mailu, Euince; Omore, Richard; Morris, J Glenn; Breiman, Robert F; Saha, Debasish; Parkhill, Julian; Nataro, James P; Stine, O Colin

Population genetic analyses of Helicobacter pylori isolates from Gambian adults and children. (2014) Secka, Ousman; Moodley, Yoshan; Antonio, Martin; Berg, Douglas E; Tapgun, Mary; Walton, Robert; Worwui, Archibald; Thomas, Vivat; Corrah, Tumani; Thomas, Julian E; Adegbola, Richard A

Differences in T-cell responses between Mycobacterium tuberculosis and Mycobacterium africanum-infected patients. (2014) Tientcheu, Leopold D; Sutherland, Jayne S; de Jong, Bouke C; Kampmann, Beate; Jafali, James; Adetifa, Ifedayo M; Antonio, Martin; Dockrell, Hazel M; Ota, Martin O

Face mask sampling for the detection of Mycobacterium tuberculosis in expelled aerosols. (2014) Williams, Caroline ML; Cheah, Eddy SG; Malkin, Joanne; Patel, Hemu; Otu, Jacob; Mlaga, Kodjovi; Sutherland, Jayne S; Antonio, Martin; Perera, Nelun; Woltmann, Gerrit; Haldar, Pranabashis; Garton, Natalie J; Barer, Michael R

2013

Population biology of Streptococcus pneumoniae in West Africa: multilocus sequence typing of serotypes that exhibit different predisposition to invasive disease and carriage. (2013) Donkor, Eric S; Adegbola, Richard A; Wren, Brendan W; Antonio, Martin

Immunogenic Mycobacterium africanum strains associated with ongoing transmission in The Gambia. (2013) Gehre, Florian; Antonio, Martin; Otu, Jacob K; Sallah, Neneh; Secka, Oumie; Faal, Tutty; Owiafe, Patrick; Sutherland, Jayne S; Adetifa, Ifedayo M; Ota, Martin O; Kampmann, Beate; Corrah, Tumani; de Jong, Bouke C

Deciphering the growth behaviour of Mycobacterium africanum. (2013) Gehre, Florian; Otu, Jacob; DeRiemer, Kathryn; de Sessions, Paola Florez; Hibberd, Martin L; Mulders, Wim; Corrah, Tumani; de Jong, Bouke C; Antonio, Martin

Comparison of the prevalence of common bacterial pathogens in the oropharynx and nasopharynx of gambian infants. (2013) Odutola, Aderonke; Antonio, Martin; Owolabi, Olumuyiwa; Bojang, Abdoulie; Foster-Nyarko, Ebenezer; Donkor, Simon; Adetifa, Ifedayo; Taylor, Sylvia; Bottomley, Christian; Greenwood, Brian; Ota, Martin

Microbes and the malnourished child. (2013) Prentice, Andrew M; Nabwera, Helen; Kwambana, Brenda; Antonio, Martin; Moore, Sophie E

Nasopharyngeal carriage of pneumococci four years after community-wide vaccination with PCV-7 in The Gambia: long-term evaluation of a cluster randomized trial. (2013) Roca, Anna; Dione, Michel M; Bojang, Abdoulie; Townend, John; Egere, Uzochukwu; Darboe, Ousainou; Howie, Stephen RC; Hill, Philip C; Adegbola, Richard A; Greenwood, Brian M; Antonio, Martin

Standard method for detecting upper respiratory carriage of Streptococcus pneumoniae: updated recommendations from the World Health Organization Pneumococcal Carriage Working Group. (2013) Satzke, Catherine; Turner, Paul; Virolainen-Julkunen, Anni; Adrian, Peter V; Antonio, Martin; Hare, Kim M; Henao-Restrepo, Ana Maria; Leach, Amanda J; Klugman, Keith P; Porter, Barbara D; Sá-Leão, Raquel; Scott, J Anthony; Nohynek, Hanna; O'Brien, Katherine L; WHO Pneumococcal Carriage Working Group

2012

Pre-vaccination nasopharyngeal pneumococcal carriage in a Nigerian population: epidemiology and population biology. (2012) Adetifa, Ifedayo MO; Antonio, Martin; Okoromah, Christy AN; Ebruke, Chinelo; Inem, Victor; Nsekpong, David; Bojang, Abdoulie; Adegbola, Richard A

The genome of Mycobacterium africanum West African 2 reveals a lineage-specific locus and genome erosion common to the M. tuberculosis complex. (2012) Bentley, Stephen D; Comas, Iñaki; Bryant, Josephine M; Walker, Danielle; Smith, Noel H; Harris, Simon R; Thurston, Scott; Gagneux, Sebastien; Wood, Jonathan; Antonio, Martin; Quail, Michael A; Gehre, Florian; Adegbola, Richard A; Parkhill, Julian; de Jong, Bouke C

Comparative phylogenomics of Streptococcus pneumoniae isolated from invasive disease and nasopharyngeal carriage from West Africans. (2012) Donkor, Eric S; Stabler, Richard A; Hinds, Jason; Adegbola, Richard A; Antonio, Martin; Wren, Brendan W

Chrysomya putoria, a putative vector of diarrheal diseases. (2012) Lindsay, Steven W; Lindsay, Thomas C; Duprez, Jessica; Hall, Martin JR; Kwambana, Brenda A; Jawara, Musa; Nurudeen, Ikumapayi U; Sallah, Neneh; Wyatt, Nigel; D'Alessandro, Umberto; Pinder, Margaret; Antonio, Martin

Diagnostic microbiologic methods in the GEMS-1 case/control study. (2012) Panchalingam, Sandra; Antonio, Martin; Hossain, Anowar; Mandomando, Inacio; Ochieng, Ben; Oundo, Joseph; Ramamurthy, T; Tamboura, Boubou; Zaidi, Anita KM; Petri, William; Houpt, Eric; Murray, Patrick; Prado, Valeria; Vidal, Roberto; Steele, Duncan; Strockbine, Nancy; Sansonetti, Philippe; Glass, Roger I; Robins-Browne, Roy M; Tauschek, Marija; Svennerholm, Ann-Marie; Berkeley, Lynette Y; Kotloff, Karen; Levine, Myron M; Nataro, James P

Effect of age and vaccination with a pneumococcal conjugate vaccine on the density of pneumococcal nasopharyngeal carriage. (2012) Roca, A; Bottomley, C; Hill, PC; Bojang, A; Egere, U; Antonio, M; Darboe, O; Greenwood, BM; Adegbola, RA

Highly accurate diagnosis of pleural tuberculosis by immunological analysis of the pleural effusion. (2012) Sutherland, Jayne S; Garba, Danlani; Fombah, Augustin E; Mendy-Gomez, Awa; Mendy, Francis S; Antonio, Martin; Townend, John; Ideh, Readon C; Corrah, Tumani; Ota, Martin OC

2011

Antimicrobial resistance and virulence genes of non-typhoidal Salmonella isolates in The Gambia and Senegal. (2011) Dione, Michel M; Ikumapayi, Usman; Saha, Debasish; Mohammed, Nuredin Ibrahim; Adegbola, Richard A; Geerts, Stanny; Ieven, Margareta; Antonio, Martin

High levels of recombination among Streptococcus pneumoniae isolates from the Gambia. (2011) Donkor, ES; Bishop, CJ; Gould, KA; Hinds, J; Antonio, M; Wren, B; Hanage, WP

Early acquisition and high nasopharyngeal co-colonisation by Streptococcus pneumoniae and three respiratory pathogens amongst Gambian new-borns and infants. (2011) Kwambana, Brenda A; Barer, Michael R; Bottomley, Christian; Adegbola, Richard A; Antonio, Martin

Differential effects of frozen storage on the molecular detection of bacterial taxa that inhabit the nasopharynx. (2011) Kwambana, Brenda A; Mohammed, Nuredin I; Jeffries, David; Barer, Mike; Adegbola, Richard A; Antonio, Martin

Effects of community-wide vaccination with PCV-7 on pneumococcal nasopharyngeal carriage in the Gambia: a cluster-randomized trial. (2011) Roca, Anna; Hill, Philip C; Townend, John; Egere, Uzo; Antonio, Martin; Bojang, Abdoulie; Akisanya, Abiodun; Litchfield, Teresa; Nsekpong, David E; Oluwalana, Claire; Howie, Stephen RC; Greenwood, Brian; Adegbola, Richard A

Mixed infection with cagA positive and cagA negative strains of Helicobacter pylori lowers disease burden in The Gambia. (2011) Secka, Ousman; Antonio, Martin; Berg, Douglas E; Tapgun, Mary; Bottomley, Christian; Thomas, Vivat; Walton, Robert; Corrah, Tumani; Thomas, Julian E; Adegbola, Richard A

PCR-based genotyping of Helicobacter pylori of Gambian children and adults directly from biopsy specimens and bacterial cultures. (2011) Secka, Ousman; Antonio, Martin; Tapgun, Mary; Berg, Douglas E; Bottomley, Christian; Thomas, Vivat; Walton, Robert; Corrah, Tumani; Adegbola, Richard A; Thomas, Julian E

2010

Transmission of Streptococcus pneumoniae in rural Gambian villages: a longitudinal study. (2010) Hill, Philip C; Townend, John; Antonio, Martin; Akisanya, Biodun; Ebruke, Chinelo; Lahai, George; Greenwood, Brian M; Adegbola, Richard A

2009

Evaluation of sequential multiplex PCR for direct detection of multiple serotypes of Streptococcus pneumoniae from nasopharyngeal secretions. (2009) Antonio, Martin; Hakeem, Ishrat; Sankareh, Kawsu; Cheung, Yin Bun; Adegbola, Richard A

2008

Molecular epidemiology of pneumococci obtained from Gambian children aged 2-29 months with invasive pneumococcal disease during a trial of a 9-valent pneumococcal conjugate vaccine. (2008) Antonio, Martin; Dada-Adegbola, Hannah; Biney, Ekow; Awine, Tim; O'Callaghan, John; Pfluger, Valentin; Enwere, Godwin; Okoko, Brown; Oluwalana, Claire; Vaughan, Adeola; Zaman, Syed Ma; Pluschke, Gerd; Greenwood, Brian M; Cutts, Felicity; Adegbola, Richard A

Seasonality and outbreak of a predominant Streptococcus pneumoniae serotype 1 clone from The Gambia: expansion of ST217 hypervirulent clonal complex in West Africa. (2008) Antonio, Martin; Hakeem, Ishrat; Awine, Timothy; Secka, Ousman; Sankareh, Kawsu; Nsekpong, David; Lahai, George; Akisanya, Abiodun; Egere, Uzochukwu; Enwere, Godwin; Zaman, Syed MA; Hill, Philip C; Corrah, Tumani; Cutts, Felicity; Greenwood, Brian M; Adegbola, Richard A

Progression to active tuberculosis, but not transmission, varies by Mycobacterium tuberculosis lineage in The Gambia. (2008) de Jong, Bouke C; Hill, Philip C; Aiken, Alex; Awine, Timothy; Antonio, Martin; Adetifa, Ifedayo M; Jackson-Sillah, Dolly J; Fox, Annette; Deriemer, Kathryn; Gagneux, Sebastien; Borgdorff, Martien W; McAdam, Keith PWJ; Corrah, Tumani; Small, Peter M; Adegbola, Richard A

2007

Molecular epidemiology of community-acquired invasive non-typhoidal Salmonella among children aged 2 29 months in rural Gambia and discovery of a new serovar, Salmonella enterica Dingiri. (2007) Ikumapayi, Usman N; Antonio, Martin; Sonne-Hansen, Jacob; Biney, Ekow; Enwere, Godwin; Okoko, Brown; Oluwalana, Claire; Vaughan, Adeola; Zaman, Syed MA; Greenwood, Brian M; Cutts, Felicity T; Adegbola, Richard A