Items where Author is "Thomson, Nicholas"
Number of items: 176.
2023
Genomic attributes of Vibrio cholerae O1 responsible for 2022 massive cholera outbreak in Bangladesh. (2023)
Monir, Md Mamun; Islam, Mohammad Tarequl; Mazumder, Razib; Mondal, Dinesh; Nahar, Kazi Sumaita; Sultana, Marzia; Morita, Masatomo; Ohnishi, Makoto; Huq, Anwar; Watanabe, Haruo; Qadri, Firdausi; Rahman, Mustafizur; Thomson, Nicholas; Seed, Kimberley; Colwell, Rita R; Ahmed, Tahmeed; Alam, Munirul
2022
Mobility of antimicrobial resistance across serovars and disease presentations in non-typhoidal Salmonella from animals and humans in Vietnam. (2022)
Bloomfield, Samuel; Duong, Vu Thuy; Tuyen, Ha Thanh; Campbell, James I; Thomson, Nicholas R; Parkhill, Julian; Le Phuc, Hoang; Chau, Tran Thi Hong; Maskell, Duncan J; Perron, Gabriel G; Ngoc, Nguyen Minh; Vi, Lu Lan; Adriaenssens, Evelien M; Baker, Stephen; Mather, Alison E
Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen. (2022)
Gorrie, Claire L; Mirčeta, Mirjana; Wick, Ryan R; Judd, Louise M; Lam, Margaret MC; Gomi, Ryota; Abbott, Iain J; Thomson, Nicholas R; Strugnell, Richard A; Pratt, Nigel F; Garlick, Jill S; Watson, Kerrie M; Hunter, Peter C; Pilcher, David V; McGloughlin, Steve A; Spelman, Denis W; Wyres, Kelly L; Jenney, Adam WJ; Holt, Kathryn E
Colonization dynamics of extended-spectrum beta-lactamase-producing Enterobacterales in the gut of Malawian adults. (2022)
Lewis, Joseph M; Mphasa, Madalitso; Banda, Rachel; Beale, Mathew A; Heinz, Eva; Mallewa, Jane; Jewell, Christopher; Faragher, Brian; Thomson, Nicholas R; Feasey, Nicholas A
Contrasting long-term dynamics of antimicrobial resistance and virulence plasmids in Salmonella Typhimurium from animals. (2022)
Mellor, Kate C; Blackwell, Grace A; Cawthraw, Shaun A; Mensah, Nana E; Reid, Stuart WJ; Thomson, Nicholas R; Petrovska, Liljana; Mather, Alison E
Draft Genome Sequence of an Enterotoxigenic Escherichia coli Strain Carrying Genes for Colonization Surface Antigen 13 and a Heat-Labile Toxin. (2022)
Njoroge, Samuel M; Madé, Laure F; von Mentzer, Astrid; Kulohoma, Benard W; Kamanu, Timothy K; Ouko, Tom T; Kiiru, John; Ward, Melissa J; Thomson, Nicholas R; Fèvre, Eric M; Woolhouse, Mark; Kariuki, Samuel
Vibrio cholerae O139 genomes provide a clue to why it may have failed to usher in the eighth cholera pandemic. (2022)
Ramamurthy, Thandavarayan; Pragasam, Agila Kumari; Taylor-Brown, Alyce; Will, Robert C; Vasudevan, Karthick; Das, Bhabatosh; Srivastava, Sunil Kumar; Chowdhury, Goutam; Mukhopadhyay, Asish K; Dutta, Shanta; Veeraraghavan, Balaji; Thomson, Nicholas R; Sharma, Naresh C; Nair, Gopinath Balakrish; Takeda, Yoshifumi; Ghosh, Amit; Dougan, Gordon; Mutreja, Ankur
The genus Serratia revisited by genomics. (2022)
Williams, David J; Grimont, Patrick AD; Cazares, Adrián; Grimont, Francine; Ageron, Elisabeth; Pettigrew, Kerry A; Cazares, Daniel; Njamkepo, Elisabeth; Weill, François-Xavier; Heinz, Eva; Holden, Matthew TG; Thomson, Nicholas R; Coulthurst, Sarah J
Population structure analysis and laboratory monitoring of Shigella by core-genome multilocus sequence typing. (2022)
Yassine, Iman; Lefèvre, Sophie; Hansen, Elisabeth E; Ruckly, Corinne; Carle, Isabelle; Lejay-Collin, Monique; Fabre, Laëtitia; Rafei, Rayane; Clermont, Dominique; de la Gandara, Maria Pardos; Dabboussi, Fouad; Thomson, Nicholas R; Weill, François-Xavier
2021
Global phylogeny of Treponema pallidum lineages reveals recent expansion and spread of contemporary syphilis. (2021)
Beale, Mathew A; Marks, Michael; Cole, Michelle J; Lee, Min-Kuang; Pitt, Rachel; Ruis, Christopher; Balla, Eszter; Crucitti, Tania; Ewens, Michael; Fernández-Naval, Candela; Grankvist, Anna; Guiver, Malcolm; Kenyon, Chris R; Khairullin, Rafil; Kularatne, Ranmini; Arando, Maider; Molini, Barbara J; Obukhov, Andrey; Page, Emma E; Petrovay, Fruzsina; Rietmeijer, Cornelis; Rowley, Dominic; Shokoples, Sandy; Smit, Erasmus; Sweeney, Emma L; Taiaroa, George; Vera, Jaime H; Wennerås, Christine; Whiley, David M; Williamson, Deborah A; Hughes, Gwenda; Naidu, Prenilla; Unemo, Magnus; Krajden, Mel; Lukehart, Sheila A; Morshed, Muhammad G; Fifer, Helen; Thomson, Nicholas R
Evolutionary histories and antimicrobial resistance in Shigella flexneri and Shigella sonnei in Southeast Asia. (2021)
Chung The, Hao; Bodhidatta, Ladaporn; Pham, Duy Thanh; Mason, Carl J; Ha Thanh, Tuyen; Voong Vinh, Phat; Turner, Paul; Hem, Sopheak; Dance, David AB; Newton, Paul N; Phetsouvanh, Rattanaphone; Davong, Viengmon; Thwaites, Guy E; Thomson, Nicholas R; Baker, Stephen; Rabaa, Maia A
Genomics, social media and mobile phone data enable mapping of SARS-CoV-2 lineages to inform health policy in Bangladesh. (2021)
Cowley, Lauren A; Afrad, Mokibul Hassan; Rahman, Sadia Isfat Ara; Mamun, Md Mahfuz Al; Chin, Taylor; Mahmud, Ayesha; Rahman, Mohammed Ziaur; Billah, Mallick Masum; Khan, Manjur Hossain; Sultana, Sharmin; Khondaker, Tilovatul; Baker, Stephen; Banik, Nandita; Alam, Ahmed Nawsher; Mannoor, Kaiissar; Banu, Sayera; Chowdhury, Anir; Flora, Meerjady Sabrina; Thomson, Nicholas R; Buckee, Caroline O; Qadri, Firdausi; Shirin, Tahmina
Genomic contextualisation of ancient DNA molecular data from an Argentinian fifth pandemic Vibrio cholerae infection. (2021)
Dorman, Matthew J; Thomson, Nicholas R; Campos, Josefina
gbpA and chiA genes are not uniformly distributed amongst diverse Vibrio cholerae. (2021)
Fennell, Thea G; Blackwell, Grace A; Thomson, Nicholas R; Dorman, Matthew J
Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei. (2021)
Hawkey, Jane; Paranagama, Kalani; Baker, Kate S; Bengtsson, Rebecca J; Weill, François-Xavier; Thomson, Nicholas R; Baker, Stephen; Cerdeira, Louise; Iqbal, Zamin; Hunt, Martin; Ingle, Danielle J; Dallman, Timothy J; Jenkins, Claire; Williamson, Deborah A; Holt, Kathryn E
A comprehensive and high-quality collection of Escherichia coli genomes and their genes. (2021)
Horesh, Gal; Blackwell, Grace A; Tonkin-Hill, Gerry; Corander, Jukka; Heinz, Eva; Thomson, Nicholas R
Different evolutionary trends form the twilight zone of the bacterial pan-genome. (2021)
Horesh, Gal; Taylor-Brown, Alyce; McGimpsey, Stephanie; Lassalle, Florent; Corander, Jukka; Heinz, Eva; Thomson, Nicholas R
The evolutionary history of Shigella flexneri serotype 6 in Asia. (2021)
Mai, Si-Nguyen T; Bodhidatta, Ladaporn; Turner, Paul; Wangchuk, Sonam; Ha Thanh, Tuyen; Voong Vinh, Phat; Pham, Duy Thanh; Rabaa, Maia A; Thwaites, Guy E; Thomson, Nicholas R; Baker, Stephen; Chung The, Hao
2020
Genomics of the Argentinian cholera epidemic elucidate the contrasting dynamics of epidemic and endemic Vibrio cholerae. (2020)
Dorman, Matthew J; Domman, Daryl; Poklepovich, Tomás; Tolley, Charlotte; Zolezzi, Gisella; Kane, Leanne; Viñas, María Rosa; Panagópulo, Marcela; Moroni, Miriam; Binsztein, Norma; Caffer, María Inés; Clare, Simon; Dougan, Gordon; Salmond, George PC; Parkhill, Julian; Campos, Josefina; Thomson, Nicholas R
'Community evolution' - laboratory strains and pedigrees in the age of genomics. (2020)
Dorman, Matthew J; Thomson, Nicholas R
Genetic Markers in S. Paratyphi C Reveal Primary Adaptation to Pigs. (2020)
Nair, Satheesh; Fookes, Maria; Corton, Craig; Thomson, Nicholas R; Wain, John; Langridge, Gemma C
2019
Genomic epidemiology of syphilis reveals independent emergence of macrolide resistance across multiple circulating lineages. (2019)
Beale, Mathew A; Marks, Michael; Sahi, Sharon K; Tantalo, Lauren C; Nori, Achyuta V; French, Patrick; Lukehart, Sheila A; Marra, Christina M; Thomson, Nicholas R
Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii. (2019)
Boinett, Christine J; Cain, Amy K; Hawkey, Jane; Do Hoang, Nhu Tran; Khanh, Nhu Nguyen Thi; Thanh, Duy Pham; Dordel, Janina; Campbell, James I; Lan, Nguyen Phu Huong; Mayho, Matthew; Langridge, Gemma C; Hadfield, James; Chau, Nguyen Van Vinh; Thwaites, Guy E; Parkhill, Julian; Thomson, Nicholas R; Holt, Kathryn E; Baker, Stephen
Whole genome sequence of Vibrio cholerae directly from dried spotted filter paper. (2019)
Bénard, Angèle HM; Guenou, Etienne; Fookes, Maria; Ateudjieu, Jerome; Kasambara, Watipaso; Siever, Matthew; Rebaudet, Stanislas; Boncy, Jacques; Adrien, Paul; Piarroux, Renaud; Sack, David A; Thomson, Nicholas; Debes, Amanda K
High quality reference genomes for toxigenic and non-toxigenic Vibrio cholerae serogroup O139. (2019)
Dorman, Matthew J; Domman, Daryl; Uddin, Muhammad Ikhtear; Sharmin, Salma; Afrad, Mokibul Hassan; Begum, Yasmin Ara; Qadri, Firdausi; Thomson, Nicholas R
The history, genome and biology of NCTC 30: a non-pandemic Vibrio cholerae isolate from World War One. (2019)
Dorman, Matthew J; Kane, Leanne; Domman, Daryl; Turnbull, Jake D; Cormie, Claire; Fazal, Mohammed-Abbas; Goulding, David A; Russell, Julie E; Alexander, Sarah; Thomson, Nicholas R
Caribbean multi-centre study of Klebsiella pneumoniae: whole-genome sequencing, antimicrobial resistance and virulence factors. (2019)
Heinz, Eva; Brindle, Richard; Morgan-McCalla, Andrina; Peters, Keisha; Thomson, Nicholas R
Antimicrobial Resistance Diversity Suggestive of Distinct Salmonella Typhimurium Sources or Selective Pressures in Food-Production Animals. (2019)
Mellor, Kate C; Petrovska, Liljana; Thomson, Nicholas R; Harris, Kate; Reid, Stuart WJ; Mather, Alison E
Collecting and exploiting data to understand a nation's sexual health needs: Implications for the British National Surveys of Sexual Attitudes and Lifestyles (Natsal). (2019)
Mercer, Catherine H; Clifton, Soazig; Prior, Gillian; Aldridge, Robert W; Bonell, Chris; Copas, Andrew J; Field, Nigel; Gibbs, Jo; Macdowall, Wendy; Mitchell, Kirstin R; Tanton, Clare; Thomson, Nick; Unemo, Magnus; Sonnenberg, Pam
Use of whole-genome sequencing to identify clusters of Shigella flexneri associated with sexual transmission in men who have sex with men in England: a validation study using linked behavioural data. (2019)
Mitchell, Holly D; Mikhail, Amy FW; Painset, Anaïs; Dallman, Timothy J; Jenkins, Claire; Thomson, Nicholas R; Field, Nigel; Hughes, Gwenda
Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages. (2019)
Musicha, Patrick; Msefula, Chisomo L; Mather, Alison E; Chaguza, Chrispin; Cain, Amy K; Peno, Chikondi; Kallonen, Teemu; Khonga, Margaret; Denis, Brigitte; Gray, Katherine J; Heyderman, Robert S; Thomson, Nicholas R; Everett, Dean B; Feasey, Nicholas A
Genomic insights into the 2016-2017 cholera epidemic in Yemen. (2019)
Weill, François-Xavier; Domman, Daryl; Njamkepo, Elisabeth; Almesbahi, Abdullrahman A; Naji, Mona; Nasher, Samar Saeed; Rakesh, Ankur; Assiri, Abdullah M; Sharma, Naresh Chand; Kariuki, Samuel; Pourshafie, Mohammad Reza; Rauzier, Jean; Abubakar, Abdinasir; Carter, Jane Y; Wamala, Joseph F; Seguin, Caroline; Bouchier, Christiane; Malliavin, Thérèse; Bakhshi, Bita; Abulmaali, Hayder HN; Kumar, Dhirendra; Njoroge, Samuel M; Malik, Mamunur Rahman; Kiiru, John; Luquero, Francisco J; Azman, Andrew S; Ramamurthy, Thandavarayan; Thomson, Nicholas R; Quilici, Marie-Laure
2018
Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species. (2018)
Baker, Kate S; Dallman, Timothy J; Field, Nigel; Childs, Tristan; Mitchell, Holly; Day, Martin; Weill, François-Xavier; Lefèvre, Sophie; Tourdjman, Mathieu; Hughes, Gwenda; Jenkins, Claire; Thomson, Nicholas
Genomic epidemiology of Shigella in the United Kingdom shows transmission of pathogen sublineages and determinants of antimicrobial resistance. (2018)
Baker, Kate S; Dallman, Timothy J; Field, Nigel; Childs, Tristan; Mitchell, Holly; Day, Martin; Weill, François-Xavier; Lefèvre, Sophie; Tourdjman, Mathieu; Hughes, Gwenda; Jenkins, Claire; Thomson, Nicholas
An outbreak of a rare Shiga-toxin-producing Escherichia coli serotype (O117:H7) among men who have sex with men. (2018)
Baker, Kate S; Dallman, Timothy J; Thomson, Nicholas R; Jenkins, Claire
Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens. (2018)
Baker, Stephen; Thomson, Nicholas; Weill, François-Xavier; Holt, Kathryn E
Microevolution and Patterns of Transmission of Shigella sonnei within Cyclic Outbreaks Shigellosis, Israel. (2018)
Behar, Adi; Baker, Kate Susan; Bassal, Ravit; Ezernitchi, Analia; Valinsky, Lea; Thomson, Nicholas R; Cohen, Daniel
Morphological, genomic and transcriptomic responses of Klebsiella pneumoniae to the last-line antibiotic colistin. (2018)
Cain, Amy K; Boinett, Christine J; Barquist, Lars; Dordel, Janina; Fookes, Maria; Mayho, Matthew; Ellington, Matthew J; Goulding, David; Pickard, Derek; Wick, Ryan R; Holt, Kathryn E; Parkhill, Julian; Thomson, Nicholas R
Defining endemic cholera at three levels of spatiotemporal resolution within Bangladesh. (2018)
Domman, Daryl; Chowdhury, Fahima; Khan, Ashraful I; Dorman, Matthew J; Mutreja, Ankur; Uddin, Muhammad Ikhtear; Paul, Anik; Begum, Yasmin A; Charles, Richelle C; Calderwood, Stephen B; Bhuiyan, Taufiqur R; Harris, Jason B; LaRocque, Regina C; Ryan, Edward T; Qadri, Firdausi; Thomson, Nicholas R
Antimicrobial-Resistant Klebsiella pneumoniae Carriage and Infection in Specialized Geriatric Care Wards Linked to Acquisition in the Referring Hospital. (2018)
Gorrie, Claire L; Mirceta, Mirjana; Wick, Ryan R; Judd, Louise M; Wyres, Kelly L; Thomson, Nicholas R; Strugnell, Richard A; Pratt, Nigel F; Garlick, Jill S; Watson, Kerrie M; Hunter, Peter C; McGloughlin, Steve A; Spelman, Denis W; Jenney, Adam WJ; Holt, Kathryn E
SLING: a tool to search for linked genes in bacterial datasets. (2018)
Horesh, Gal; Harms, Alexander; Fino, Cinzia; Parts, Leopold; Gerdes, Kenn; Heinz, Eva; Thomson, Nicholas Robert
Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severity. (2018)
Last, AR; Pickering, H; Roberts, CH; Coll, F; Phelan, J; Burr, SE; Cassama, E; Nabicassa, M; Seth-Smith, HMB; Hadfield, J; Cutcliffe, LT; Clarke, IN; Mabey, DCW; Bailey, RL; Clark, TG; Thomson, NR; Holland, MJ
Genomic evidence that the live Chlamydia abortus vaccine strain 1B is not attenuated and has the potential to cause disease. (2018)
Longbottom, David; Sait, Michelle; Livingstone, Morag; Laroucau, Karine; Sachse, Konrad; Harris, Simon R; Thomson, Nicholas R; Seth-Smith, Helena MB
Complement Susceptibility in Relation to Genome Sequence of Recent Klebsiella pneumoniae Isolates from Thai Hospitals. (2018)
Loraine, Jessica; Heinz, Eva; De Sousa Almeida, Jessica; Milevskyy, Oleksandr; Voravuthikunchai, Supayang P; Srimanote, Potjanee; Kiratisin, Pattarachai; Thomson, Nicholas R; Taylor, Peter W
Direct Whole-Genome Sequencing of Cutaneous Strains of Haemophilus ducreyi. (2018)
Marks, Michael; Fookes, Maria; Wagner, Josef; Ghinai, Rosanna; Sokana, Oliver; Sarkodie, Yaw-Adu; Solomon, Anthony W; Mabey, David CW; Thomson, Nicholas R
New Variant of Multidrug-Resistant Salmonella enterica Serovar Typhimurium Associated with Invasive Disease in Immunocompromised Patients in Vietnam. (2018)
Mather, Alison E; Phuong, Tu Le Thi; Gao, Yunfeng; Clare, Simon; Mukhopadhyay, Subhankar; Goulding, David A; Hoang, Nhu Tran Do; Tuyen, Ha Thanh; Lan, Nguyen Phu Huong; Thompson, Corinne N; Trang, Nguyen Hoang Thu; Carrique-Mas, Juan; Tue, Ngo Tri; Campbell, James I; Rabaa, Maia A; Thanh, Duy Pham; Harcourt, Katherine; Hoa, Ngo Thi; Trung, Nguyen Vinh; Schultsz, Constance; Perron, Gabriel G; Coia, John E; Brown, Derek J; Okoro, Chinyere; Parkhill, Julian; Thomson, Nicholas R; Chau, Nguyen Van Vinh; Thwaites, Guy E; Maskell, Duncan J; Dougan, Gordon; Kenney, Linda J; Baker, Stephen
Dynamics of cholera epidemics from Benin to Mauritania. (2018)
Moore, Sandra; Dongdem, Anthony Zunuo; Opare, David; Cottavoz, Paul; Fookes, Maria; Sadji, Adodo Yao; Dzotsi, Emmanuel; Dogbe, Michael; Jeddi, Fakhri; Bidjada, Bawimodom; Piarroux, Martine; Valentin, Ouyi Tante; Glèlè, Clément Kakaï; Rebaudet, Stanislas; Sow, Amy Gassama; Constantin de Magny, Guillaume; Koivogui, Lamine; Dunoyer, Jessica; Bellet, Francois; Garnotel, Eric; Thomson, Nicholas; Piarroux, Renaud
PlasmidTron: assembling the cause of phenotypes and genotypes from NGS data. (2018)
Page, Andrew J; Wailan, Alexander; Shao, Yan; Judge, Kim; Dougan, Gordon; Klemm, Elizabeth J; Thomson, Nicholas R; Keane, Jacqueline A
Whole-genome sequencing revealed concurrent outbreaks of shigellosis in the English Orthodox Jewish Community caused by multiple importations of Shigella sonnei from Israel. (2018)
Rew, Vanessa; Mook, Piers; Trienekens, Suzan; Baker, Kate S; Dallman, Timothy J; Jenkins, Claire; Crook, Paul D; Thomson, Nicholas R
The Chlamydia muridarum plasmid revisited : new insights into growth kinetics. (2018)
Skilton, Rachel J; Wang, Yibing; O'Neill, Colette; Filardo, Simone; Marsh, Peter; Bénard, Angèle; Thomson, Nicholas R; Ramsey, Kyle H; Clarke, Ian N
Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia. (2018)
Zhou, Zhemin; Lundstrøm, Inge; Tran-Dien, Alicia; Duchêne, Sebastián; Alikhan, Nabil-Fareed; Sergeant, Martin J; Langridge, Gemma; Fotakis, Anna K; Nair, Satheesh; Stenøien, Hans K; Hamre, Stian S; Casjens, Sherwood; Christophersen, Axel; Quince, Christopher; Thomson, Nicholas R; Weill, François-Xavier; Ho, Simon YW; Gilbert, M Thomas P; Achtman, Mark
2017
Whole genome sequencing of Shigella sonnei through PulseNet Latin America and Caribbean: advancing global surveillance of foodborne illnesses. (2017)
Baker, KS; Campos, J; Pichel, M; Della Gaspera, A; Duarte-Martínez, F; Campos-Chacón, E; Bolaños-Acuña, HM; Guzmán-Verri, C; Mather, AE; Diaz Velasco, S; Zamudio Rojas, ML; Forbester, JL; Connor, TR; Keddy, KH; Smith, AM; López de Delgado, EA; Angiolillo, G; Cuaical, N; Fernández, J; Aguayo, C; Morales Aguilar, M; Valenzuela, C; Morales Medrano, AJ; Sirok, A; Weiler Gustafson, N; Diaz Guevara, PL; Montaño, LA; Perez, E; Thomson, NR
Galleria mellonella is low cost and suitable surrogate host for studying virulence of human pathogenic Vibrio cholerae. (2017)
Bokhari, Habib; Ali, Amjad; Noreen, Zobia; Thomson, Nicholas; Wren, Brendan W
Integrated view of Vibrio cholerae in the Americas. (2017)
Domman, Daryl; Quilici, Marie-Laure; Dorman, Matthew J; Njamkepo, Elisabeth; Mutreja, Ankur; Mather, Alison E; Delgado, Gabriella; Morales-Espinosa, Rosario; Grimont, Patrick AD; Lizárraga-Partida, Marcial Leonardo; Bouchier, Christiane; Aanensen, David M; Kuri-Morales, Pablo; Tarr, Cheryl L; Dougan, Gordon; Parkhill, Julian; Campos, Josefina; Cravioto, Alejandro; Weill, François-Xavier; Thomson, Nicholas R
Identification and initial characterisation of a protein involved in Campylobacter jejuni cell shape. (2017)
Esson, Diane; Gupta, Srishti; Bailey, David; Wigley, Paul; Wedley, Amy; Mather, Alison E; Méric, Guillaume; Mastroeni, Pietro; Sheppard, Samuel K; Thomson, Nicholas R; Parkhill, Julian; Maskell, Duncan J; Christie, Graham; Grant, Andrew J
Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure. (2017)
Fookes, Maria C; Hadfield, James; Harris, Simon; Parmar, Surendra; Unemo, Magnus; Jensen, Jørgen S; Thomson, Nicholas R
Minimal genetic change in Vibrio cholerae in Mozambique over time: Multilocus variable number tandem repeat analysis and whole genome sequencing. (2017)
Garrine, Marcelino; Mandomando, Inácio; Vubil, Delfino; Nhampossa, Tacilta; Acacio, Sozinho; Li, Shan; Paulson, Joseph N; Almeida, Mathieu; Domman, Daryl; Thomson, Nicholas R; Alonso, Pedro; Stine, Oscar Colin
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients. (2017)
Gorrie, Claire L; Mirceta, Mirjana; Wick, Ryan R; Edwards, David J; Thomson, Nicholas R; Strugnell, Richard A; Pratt, Nigel F; Garlick, Jill S; Watson, Kerri M; Pilcher, David V; McGloughlin, Steve A; Spelman, Denis W; Jenney, Adam WJ; Holt, Kathryn E
Antimicrobial resistant <i>Klebsiella pneumoniae</i> carriage and infection in specialized geriatric care wards linked to acquisition in the referring hospital. (2017)
Gorrie, Claire L; Mirceta, Mirjana; Wick, Ryan R; Judd, Louise M; Wyres, Kelly L; Thomson, Nicholas R; Strugnell, Richard A; Pratt, Nigel F; Garlick, Jill S; Watson, Kerrie M; Hunter, Peter C; McGloughlin, Steve A; Spelman, Denis W; Jenney, Adam WJ; Holt, Kathryn E
The Hidden Genomics of Chlamydia trachomatis. (2017)
Hadfield, James; Bénard, Angèle; Domman, Daryl; Thomson, Nicholas
Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. (2017)
Hadfield, James; Harris, Simon R; Seth-Smith, Helena MB; Parmar, Surendra; Andersson, Patiyan; Giffard, Philip M; Schachter, Julius; Moncada, Jeanne; Ellison, Louise; Vaulet, María Lucía Gallo; Fermepin, Marcelo Rodríguez; Radebe, Frans; Mendoza, Suyapa; Ouburg, Sander; Morré, Servaas A; Sachse, Konrad; Puolakkainen, Mirja; Korhonen, Suvi J; Sonnex, Chris; Wiggins, Rebecca; Jalal, Hamid; Brunelli, Tamara; Casprini, Patrizia; Pitt, Rachel; Ison, Cathy; Savicheva, Alevtina; Shipitsyna, Elena; Hadad, Ronza; Kari, Laszlo; Burton, Matthew J; Mabey, David; Solomon, Anthony W; Lewis, David; Marsh, Peter; Unemo, Magnus; Clarke, Ian N; Parkhill, Julian; Thomson, Nicholas R
Molecular epidemiology of Klebsiella pneumoniae invasive infections over a decade at Kilifi County Hospital in Kenya. (2017)
Henson, Sonal P; Boinett, Christine J; Ellington, Matthew J; Kagia, Ngure; Mwarumba, Salim; Nyongesa, Sammy; Mturi, Neema; Kariuki, Samuel; Scott, J Anthony G; Thomson, Nicholas R; Morpeth, Susan C
An untypeable enterotoxigenic Escherichia coli represents one of the dominant types causing human disease. (2017)
Iguchi, Atsushi; von Mentzer, Astrid; Kikuchi, Taisei; Thomson, Nicholas R
Population-based analysis of ocular<i>Chlamydia trachomatis</i>in trachoma-endemic West African communities identifies genomic markers of disease severity. (2017)
Last, AR; Pickering, H; Roberts, Ch; Coll, F; Phelan, J; Burr, SE; Cassama, E; Nabicassa, M; Seth-Smith, HMB; Hadfield, J; Cutcliffe, LT; Clarke, IN; Mabey, DCW; Bailey, RL; Clark, TG; Thomson, NR; Holland, MJ
Diagnostics for Yaws Eradication: Insights From Direct Next-Generation Sequencing of Cutaneous Strains of Treponema pallidum. (2017)
Marks, Michael; Fookes, Maria; Wagner, Josef; Butcher, Robert; Ghinai, Rosanna; Sokana, Oliver; Sarkodie, Yaw-Adu; Lukehart, Sheila A; Solomon, Anthony W; Mabey, David CW; Thomson, Nicholas
Genomic landscape of extended-spectrum β-lactamase resistance in Escherichia coli from an urban African setting. (2017)
Musicha, Patrick; Feasey, Nicholas A; Cain, Amy K; Kallonen, Teemu; Chaguza, Chrispin; Peno, Chikondi; Khonga, Margaret; Thompson, Sarah; Gray, Katherine J; Mather, Alison E; Heyderman, Robert S; Everett, Dean B; Thomson, Nicholas R; Msefula, Chisomo L
Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice. (2017)
Oshota, Olusegun; Conway, Max; Fookes, Maria; Schreiber, Fernanda; Chaudhuri, Roy R; Yu, Lu; Morgan, Fiona JE; Clare, Simon; Choudhary, Jyoti; Thomson, Nicholas R; Lio, Pietro; Maskell, Duncan J; Mastroeni, Pietro; Grant, Andrew J
PlasmidTron: assembling the cause of phenotypes from NGS data. (2017)
Page, Andrew J; Wailan, Alexander; Shao, Yan; Judge, Kim; Dougan, Gordon; Klemm, Elizabeth J; Thomson, Nicholas R; Keane, Jacqueline A
Genome-wide profiling of humoral immunity and pathogen genes under selection identifies immune evasion tactics of Chlamydia trachomatis during ocular infection. (2017)
Pickering, Harry; Teng, Andy; Faal, Nkoyo; Joof, Hassan; Makalo, Pateh; Cassama, Eunice; Nabicassa, Meno; Last, Anna R; Burr, Sarah E; Rowland-Jones, Sarah L; Thomson, Nicholas R; Roberts, Chrissy H; Mabey, David CW; Bailey, Robin L; Hayward, Richard D; de la Maza, Luis M; Holland, Martin J
A Clostridium difficile Lineage Endemic to Costa Rican Hospitals Is Multidrug Resistant by Acquisition of Chromosomal Mutations and Novel Mobile Genetic Elements. (2017)
Ramírez-Vargas, Gabriel; Quesada-Gómez, Carlos; Acuña-Amador, Luis; López-Ureña, Diana; Murillo, Tatiana; Del Mar Gamboa-Coronado, María; Chaves-Olarte, Esteban; Thomson, Nicholas; Rodríguez-Cavallini, Evelyn; Rodríguez, César
European Chlamydia abortus livestock isolate genomes reveal unusual stability and limited diversity, reflected in geographical signatures. (2017)
Seth-Smith, HMB; Busó, Leonor Sánchez; Livingstone, M; Sait, M; Harris, SR; Aitchison, KD; Vretou, Evangelia; Siarkou, VI; Laroucau, K; Sachse, K; Longbottom, D; Thomson, NR
Concern regarding the alleged spread of hypervirulent lymphogranuloma venereum Chlamydia trachomatis strain in Europe. (2017)
Seth-Smith, Helena Mb; Galán, Juan C; Goldenberger, Daniel; Lewis, David A; Peuchant, Olivia; Bébéar, Cecile; de Barbeyrac, Bertille; Bénard, Angele; Carter, Ian; Kok, Jen; Bruisten, Sylvia M; Versteeg, Bart; Morré, Servaas A; Thomson, Nicholas R; Egli, Adrian; de Vries, Henry Jc
Brucella Genetic Variability in Wildlife Marine Mammals Populations Relates to Host Preference and Ocean Distribution. (2017)
Suárez-Esquivel, Marcela; Baker, Kate S; Ruiz-Villalobos, Nazareth; Hernández-Mora, Gabriela; Barquero-Calvo, Elías; González-Barrientos, Rocío; Castillo-Zeledón, Amanda; Jiménez-Rojas, César; Chacón-Díaz, Carlos; Cloeckaert, Axel; Chaves-Olarte, Esteban; Thomson, Nicholas R; Moreno, Edgardo; Guzmán-Verri, Caterina
Brucella neotomae Infection in Humans, Costa Rica. (2017)
Suárez-Esquivel, Marcela; Ruiz-Villalobos, Nazareth; Jiménez-Rojas, César; Barquero-Calvo, Elías; Chacón-Díaz, Carlos; Víquez-Ruiz, Eunice; Rojas-Campos, Norman; Baker, Kate S; Oviedo-Sánchez, Gerardo; Amuy, Ernesto; Chaves-Olarte, Esteban; Thomson, Nicholas R; Moreno, Edgardo; Guzmán-Verri, Caterina
Assessing gut microbiota perturbations during the early phase of infectious diarrhea in Vietnamese children. (2017)
The, Hao Chung; Florez de Sessions, Paola; Jie, Song; Pham Thanh, Duy; Thompson, Corinne N; Nguyen Ngoc Minh, Chau; Chu, Collins Wenhan; Tran, Tuan-Anh; Thomson, Nicholas R; Thwaites, Guy E; Rabaa, Maia A; Hibberd, Martin; Baker, Stephen
Annotation of plasmid genes. (2017)
Thomas, Christopher M; Thomson, Nicholas R; Cerdeño-Tárraga, Ana M; Brown, Celeste J; Top, Eva M; Frost, Laura S
Prospective Surveillance and Rapid Whole-Genome Sequencing Detects Two Unsuspected Outbreaks of Carbapenemase-Producing Klebsiella pneumoniae in a UK Teaching Hospital. (2017)
Torok, Estee; Brodrick, Hayley; Khokhar, Fahad; Blane, Beth; Polgarova, Petra; Brown, Joanne; Enoch, David; Brown, Nicholas; Summers, Charlotte; Preller, Jacobus; Thomson, Nick; Dougan, Gordon; Parkhill, Julian; Peacock, Sharon
Genomic history of the seventh pandemic of cholera in Africa. (2017)
Weill, François-Xavier; Domman, Daryl; Njamkepo, Elisabeth; Tarr, Cheryl; Rauzier, Jean; Fawal, Nizar; Keddy, Karen H; Salje, Henrik; Moore, Sandra; Mukhopadhyay, Asish K; Bercion, Raymond; Luquero, Francisco J; Ngandjio, Antoinette; Dosso, Mireille; Monakhova, Elena; Garin, Benoit; Bouchier, Christiane; Pazzani, Carlo; Mutreja, Ankur; Grunow, Roland; Sidikou, Fati; Bonte, Laurence; Breurec, Sébastien; Damian, Maria; Njanpop-Lafourcade, Berthe-Marie; Sapriel, Guillaume; Page, Anne-Laure; Hamze, Monzer; Henkens, Myriam; Chowdhury, Goutam; Mengel, Martin; Koeck, Jean-Louis; Fournier, Jean-Michel; Dougan, Gordon; Grimont, Patrick AD; Parkhill, Julian; Holt, Kathryn E; Piarroux, Renaud; Ramamurthy, Thandavarayan; Quilici, Marie-Laure; Thomson, Nicholas R
Exploiting induced pluripotent stem cell-derived macrophages to unravel host factors influencing Chlamydia trachomatis pathogenesis. (2017)
Yeung, Amy TY; Hale, Christine; Lee, Amy H; Gill, Erin E; Bushell, Wendy; Parry-Smith, David; Goulding, David; Pickard, Derek; Roumeliotis, Theodoros; Choudhary, Jyoti; Thomson, Nick; Skarnes, William C; Dougan, Gordon; Hancock, Robert EW
Exploiting induced pluripotent stem cell-derived macrophages to unravel host factors influencing Chlamydia trachomatis pathogenesis. (2017)
Yeung, Amy TY; Hale, Christine; Lee, Amy H; Gill, Erin E; Bushell, Wendy; Parry-Smith, David; Goulding, David; Pickard, Derek; Roumeliotis, Theodoros; Choudhary, Jyoti; Thomson, Nick; Skarnes, William C; Dougan, Gordon; Hancock, Robert EW
2016
Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages. (2016)
Andersson, Patiyan; Harris, Simon R; Smith, Helena MB Seth; Hadfield, James; O'Neill, Colette; Cutcliffe, Lesley T; Douglas, Fiona P; Asche, L Valerie; Mathews, John D; Hutton, Susan I; Sarovich, Derek S; Tong, Steven YC; Clarke, Ian N; Thomson, Nicholas R; Giffard, Philip M
Travel- and Community-Based Transmission of Multidrug-Resistant Shigella sonnei Lineage among International Orthodox Jewish Communities. (2016)
Baker, Kate S; Dallman, Timothy J; Behar, Adi; Weill, François-Xavier; Gouali, Malika; Sobel, Jeremy; Fookes, Maria; Valinsky, Lea; Gal-Mor, Ohad; Connor, Thomas R; Nissan, Israel; Bertrand, Sophie; Parkhill, Julian; Jenkins, Claire; Cohen, Dani; Thomson, Nicholas R
Whole genome sequencing identifies independent outbreaks of Shigellosis in 2010 and 2011 in La Pampa Province, Argentina. (2016)
Chinen, Isabel; Galas, Marcelo; Tuduri, Ezequiel; Viñas, Maria Rosa; Carbonari, Carolina; Della Gaspera, Anabella; Nápoli, Daniela; Aanensen, David M; Argimón, Silvia; Thomson, Nicholas R; Hughes, Darren; Baker, Stephen; Guzmán-Verri, Caterina; Holden, Matthew TG; Abdala, Alejandra M; Alvarez, Lucia P; Alvez, Beatriz; Barros, Rosana; Budall, Shirley; Campano, Constanza; Chamosa, Luciana S; Cheddie, Paul; Cisterna, Daniel; De Belder, Denise; Dropa, Milena; Durand, David; Elena, Alan; Fontecha, Gustavo; Huber, Claudia; Lemos, Ana Paula; Melli, Luciano; Paul, Roxana Elizabeth; Suarez, Lesly; Torres Flores, Julian; Campos, Josefina
South Asia as a Reservoir for the Global Spread of Ciprofloxacin-Resistant Shigella sonnei: A Cross-Sectional Study. (2016)
Chung The, Hao; Rabaa, Maia A; Pham Thanh, Duy; De Lappe, Niall; Cormican, Martin; Valcanis, Mary; Howden, Benjamin P; Wangchuk, Sonam; Bodhidatta, Ladaporn; Mason, Carl J; Nguyen Thi Nguyen, To; Vu Thuy, Duong; Thompson, Corinne N; Phu Huong Lan, Nguyen; Voong Vinh, Phat; Ha Thanh, Tuyen; Turner, Paul; Sar, Poda; Thwaites, Guy; Thomson, Nicholas R; Holt, Kathryn E; Baker, Stephen
What's in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B. (2016)
Connor, Thomas R; Owen, Sian V; Langridge, Gemma; Connell, Steve; Nair, Satheesh; Reuter, Sandra; Dallman, Timothy J; Corander, Jukka; Tabing, Kristine C; Le Hello, Simon; Fookes, Maria; Doublet, Benoît; Zhou, Zhemin; Feltwell, Theresa; Ellington, Matthew J; Herrera, Silvia; Gilmour, Matthew; Cloeckaert, Axel; Achtman, Mark; Parkhill, Julian; Wain, John; De Pinna, Elizabeth; Weill, François-Xavier; Peters, Tansy; Thomson, Nick
Complete Genome Sequence of the First KPC-Type Carbapenemase-Positive Proteus mirabilis Strain from a Bloodstream Infection. (2016)
Di Pilato, Vincenzo; Chiarelli, Adriana; Boinett, Christine J; Riccobono, Eleonora; Harris, Simon R; D'Andrea, Marco Maria; Thomson, Nicholas R; Rossolini, Gian Maria; Giani, Tommaso
Genomic variations leading to alterations in cell morphology of Campylobacter spp. (2016)
Esson, Diane; Mather, Alison E; Scanlan, Eoin; Gupta, Srishti; de Vries, Stefan PW; Bailey, David; Harris, Simon R; McKinley, Trevelyan J; Méric, Guillaume; Berry, Sophia K; Mastroeni, Pietro; Sheppard, Samuel K; Christie, Graham; Thomson, Nicholas R; Parkhill, Julian; Maskell, Duncan J; Grant, Andrew J
Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings. (2016)
Feasey, Nicholas A; Hadfield, James; Keddy, Karen H; Dallman, Timothy J; Jacobs, Jan; Deng, Xiangyu; Wigley, Paul; Barquist, Lars; Langridge, Gemma C; Feltwell, Theresa; Harris, Simon R; Mather, Alison E; Fookes, Maria; Aslett, Martin; Msefula, Chisomo; Kariuki, Samuel; Maclennan, Calman A; Onsare, Robert S; Weill, François-Xavier; Le Hello, Simon; Smith, Anthony M; McClelland, Michael; Desai, Prerak; Parry, Christopher M; Cheesbrough, John; French, Neil; Campos, Josefina; Chabalgoity, Jose A; Betancor, Laura; Hopkins, Katie L; Nair, Satheesh; Humphrey, Tom J; Lunguya, Octavie; Cogan, Tristan A; Tapia, Milagritos D; Sow, Samba O; Tennant, Sharon M; Bornstein, Kristin; Levine, Myron M; Lacharme-Lora, Lizeth; Everett, Dean B; Kingsley, Robert A; Parkhill, Julian; Heyderman, Robert S; Dougan, Gordon; Gordon, Melita A; Thomson, Nicholas R
The diversity of Klebsiella pneumoniae surface polysaccharides. (2016)
Follador, Rainer; Heinz, Eva; Wyres, Kelly L; Ellington, Matthew J; Kowarik, Michael; Holt, Kathryn E; Thomson, Nicholas R
Salmonella Enteritidis Isolate Harboring Multiple Efflux Pumps and Pathogenicity Factors, Shows Absence of O Antigen Polymerase Gene. (2016)
Jones-Dias, Daniela; Clemente, Lurdes; Egas, Conceição; Froufe, Hugo; Sampaio, Daniel A; Vieira, Luís; Fookes, Maria; Thomson, Nicholas R; Manageiro, Vera; Caniça, Manuela
Retrospective Analysis of Serotype Switching of Vibrio cholerae O1 in a Cholera Endemic Region Shows It Is a Non-random Process. (2016)
Karlsson, Stefan L; Thomson, Nicholas; Mutreja, Ankur; Connor, Thomas; Sur, Dipika; Ali, Mohammad; Clemens, John; Dougan, Gordon; Holmgren, Jan; Lebens, Michael
A genomic island in Vibrio cholerae with VPI-1 site-specific recombination characteristics contains CRISPR-Cas and type VI secretion modules. (2016)
Labbate, Maurizio; Orata, Fabini D; Petty, Nicola K; Jayatilleke, Nathasha D; King, William L; Kirchberger, Paul C; Allen, Chris; Mann, Gulay; Mutreja, Ankur; Thomson, Nicholas R; Boucher, Yan; Charles, Ian G
Genomic Analysis of Salmonella enterica Serovar Typhimurium from Wild Passerines in England and Wales. (2016)
Mather, Alison E; Lawson, Becki; de Pinna, Elizabeth; Wigley, Paul; Parkhill, Julian; Thomson, Nicholas R; Page, Andrew J; Holmes, Mark A; Paterson, Gavin K
'Add, stir and reduce': Yersinia spp. as model bacteria for pathogen evolution. (2016)
McNally, Alan; Thomson, Nicholas R; Reuter, Sandra; Wren, Brendan W
Global phylogeography and evolutionary history of Shigella dysenteriae type 1. (2016)
Njamkepo, Elisabeth; Fawal, Nizar; Tran-Dien, Alicia; Hawkey, Jane; Strockbine, Nancy; Jenkins, Claire; Talukder, Kaisar A; Bercion, Raymond; Kuleshov, Konstantin; Kolínská, Renáta; Russell, Julie E; Kaftyreva, Lidia; Accou-Demartin, Marie; Karas, Andreas; Vandenberg, Olivier; Mather, Alison E; Mason, Carl J; Page, Andrew J; Ramamurthy, Thandavarayan; Bizet, Chantal; Gamian, Andrzej; Carle, Isabelle; Sow, Amy Gassama; Bouchier, Christiane; Wester, Astrid Louise; Lejay-Collin, Monique; Fonkoua, Marie-Christine; Le Hello, Simon; Blaser, Martin J; Jernberg, Cecilia; Ruckly, Corinne; Mérens, Audrey; Page, Anne-Laure; Aslett, Martin; Roggentin, Peter; Fruth, Angelika; Denamur, Erick; Venkatesan, Malabi; Bercovier, Hervé; Bodhidatta, Ladaporn; Chiou, Chien-Shun; Clermont, Dominique; Colonna, Bianca; Egorova, Svetlana; Pazhani, Gururaja P; Ezernitchi, Analia V; Guigon, Ghislaine; Harris, Simon R; Izumiya, Hidemasa; Korzeniowska-Kowal, Agnieszka; Lutyńska, Anna; Gouali, Malika; Grimont, Francine; Langendorf, Céline; Marejková, Monika; Peterson, Lorea AM; Perez-Perez, Guillermo; Ngandjio, Antoinette; Podkolzin, Alexander; Souche, Erika; Makarova, Mariia; Shipulin, German A; Ye, Changyun; Žemličková, Helena; Herpay, Mária; Grimont, Patrick AD; Parkhill, Julian; Sansonetti, Philippe; Holt, Kathryn E; Brisse, Sylvain; Thomson, Nicholas R; Weill, François-Xavier
The Type III Secretion System Effector SeoC of Salmonella enterica subsp. salamae and S. enterica subsp. arizonae ADP-Ribosylates Src and Inhibits Opsonophagocytosis. (2016)
Pollard, Dominic J; Young, Joanna C; Covarelli, Valentina; Herrera-León, Silvia; Connor, Thomas R; Fookes, Maria; Walker, Danielle; Echeita, Aurora; Thomson, Nicholas R; Berger, Cedric N; Frankel, Gad
Quantitative Proteomics of the Infectious and Replicative Forms of Chlamydia trachomatis. (2016)
Skipp, Paul JS; Hughes, Chris; McKenna, Thérèse; Edwards, Richard; Langridge, James; Thomson, Nicholas R; Clarke, Ian N
Brucella abortus Strain 2308 Wisconsin Genome: Importance of the Definition of Reference Strains. (2016)
Suárez-Esquivel, Marcela; Ruiz-Villalobos, Nazareth; Castillo-Zeledón, Amanda; Jiménez-Rojas, César; Roop Ii, R Martin; Comerci, Diego J; Barquero-Calvo, Elías; Chacón-Díaz, Carlos; Caswell, Clayton C; Baker, Kate S; Chaves-Olarte, Esteban; Thomson, Nicholas R; Moreno, Edgardo; Letesson, Jean J; De Bolle, Xavier; Guzmán-Verri, Caterina
The genomic signatures of Shigella evolution, adaptation and geographical spread. (2016)
The, Hao Chung; Thanh, Duy Pham; Holt, Kathryn E; Thomson, Nicholas R; Baker, Stephen
Identification of Klebsiella capsule synthesis loci from whole genome data. (2016)
Wyres, Kelly L; Wick, Ryan R; Gorrie, Claire; Jenney, Adam; Follador, Rainer; Thomson, Nicholas R; Holt, Kathryn E
Identification of<i>Klebsiella</i>capsule synthesis loci from whole genome data. (2016)
Wyres, Kelly L; Wick, Ryan R; Gorrie, Claire; Jenney, Adam; Follador, Rainer; Thomson, Nicholas R; Holt, Kathryn E
2015
The Murray collection of pre-antibiotic era Enterobacteriacae: a unique research resource. (2015)
Baker, Kate S; Burnett, Edward; McGregor, Hannah; Deheer-Graham, Ana; Boinett, Christine; Langridge, Gemma C; Wailan, Alexander M; Cain, Amy K; Thomson, Nicholas R; Russell, Julie E; Parkhill, Julian
Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study. (2015)
Baker, Kate S; Dallman, Timothy J; Ashton, Philip M; Day, Martin; Hughes, Gwenda; Crook, Paul D; Gilbart, Victoria L; Zittermann, Sandra; Allen, Vanessa G; Howden, Benjamin P; Tomita, Takehiro; Valcanis, Mary; Harris, Simon R; Connor, Thomas R; Sintchenko, Vitali; Howard, Peter; Brown, Jeremy D; Petty, Nicola K; Gouali, Malika; Thanh, Duy Pham; Keddy, Karen H; Smith, Anthony M; Talukder, Kaisar A; Faruque, Shah M; Parkhill, Julian; Baker, Stephen; Weill, François-Xavier; Jenkins, Claire; Thomson, Nicholas R
70th Anniversary Collection for the Microbiology Society: Microbial Genomics. (2015)
Bentley, Stephen; Thomson, Nicholas
Vibrio cholerae Serogroup O139: Isolation from Cholera Patients and Asymptomatic Household Family Members in Bangladesh between 2013 and 2014. (2015)
Chowdhury, Fahima; Mather, Alison E; Begum, Yasmin Ara; Asaduzzaman, Muhammad; Baby, Nabilah; Sharmin, Salma; Biswas, Rajib; Uddin, Muhammad Ikhtear; LaRocque, Regina C; Harris, Jason B; Calderwood, Stephen B; Ryan, Edward T; Clemens, John D; Thomson, Nicholas R; Qadri, Firdausi
A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae. (2015)
Chung The, Hao; Karkey, Abhilasha; Pham Thanh, Duy; Boinett, Christine J; Cain, Amy K; Ellington, Matthew; Baker, Kate S; Dongol, Sabina; Thompson, Corinne; Harris, Simon R; Jombart, Thibaut; Le Thi Phuong, Tu; Tran Do Hoang, Nhu; Ha Thanh, Tuyen; Shretha, Shrijana; Joshi, Suchita; Basnyat, Buddha; Thwaites, Guy; Thomson, Nicholas R; Rabaa, Maia A; Baker, Stephen
Introduction and establishment of fluoroquinolone-resistant Shigella sonnei into Bhutan. (2015)
Chung The, Hao; Rabaa, Maia A; Thanh, Duy Pham; Ruekit, Sirigade; Wangchuk, Sonam; Dorji, Tshering; Tshering, Kinzang Pem; Nguyen, To Nguyen Thi; Vinh, Phat Voong; Thanh, Tuyen Ha; Minh, Chau Nguyen Ngoc; Turner, Paul; Sar, Poda; Thwaites, Guy; Holt, Kathryn E; Thomson, Nicholas R; Bodhidatta, Ladaporn; Jeffries Mason, Carl; Baker, Stephen
Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri. (2015)
Connor, Thomas R; Barker, Clare R; Baker, Kate S; Weill, François-Xavier; Talukder, Kaisar Ali; Smith, Anthony M; Baker, Stephen; Gouali, Malika; Pham Thanh, Duy; Jahan Azmi, Ishrat; Dias da Silveira, Wanderley; Semmler, Torsten; Wieler, Lothar H; Jenkins, Claire; Cravioto, Alejandro; Faruque, Shah M; Parkhill, Julian; Wook Kim, Dong; Keddy, Karen H; Thomson, Nicholas R
Co-cultivation and transcriptome sequencing of two co-existing fish pathogens Moritella viscosa and Aliivibrio wodanis. (2015)
Hjerde, Erik; Karlsen, Christian; Sørum, Henning; Parkhill, Julian; Willassen, Nils Peder; Thomson, Nicholas R
Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health. (2015)
Holt, Kathryn E; Wertheim, Heiman; Zadoks, Ruth N; Baker, Stephen; Whitehouse, Chris A; Dance, David; Jenney, Adam; Connor, Thomas R; Hsu, Li Yang; Severin, Juliëtte; Brisse, Sylvain; Cao, Hanwei; Wilksch, Jonathan; Gorrie, Claire; Schultz, Mark B; Edwards, David J; Nguyen, Kinh Van; Nguyen, Trung Vu; Dao, Trinh Tuyet; Mensink, Martijn; Minh, Vien Le; Nhu, Nguyen Thi Khanh; Schultsz, Constance; Kuntaman, Kuntaman; Newton, Paul N; Moore, Catrin E; Strugnell, Richard A; Thomson, Nicholas R
Genetic characterization of three qnrS1-harbouring multidrug-resistance plasmids and qnrS1-containing transposons circulating in Ho Chi Minh City, Vietnam. (2015)
Le, Vien; Nhu, Nguyen Thi Khanh; Cerdeno-Tarraga, Ana; Campbell, James I; Tuyen, Ha Thanh; Nhu, Tran Do Hoang; Tam, Pham Thi Thanh; Schultsz, Constance; Thwaites, Guy; Thomson, Nicholas R; Baker, Stephen
Antimicrobial Drug Resistance of Vibrio cholerae, Democratic Republic of the Congo. (2015)
Miwanda, Berthe; Moore, Sandra; Muyembe, Jean-Jacques; Nguefack-Tsague, Georges; Kabangwa, Ickel Kakongo; Ndjakani, Daniel Yassa; Mutreja, Ankur; Thomson, Nicholas; Thefenne, Helene; Garnotel, Eric; Tshapenda, Gaston; Kakongo, Denis Kandolo; Kalambayi, Guy; Piarroux, Renaud
Relationship between Distinct African Cholera Epidemics Revealed via MLVA Haplotyping of 337 Vibrio cholerae Isolates. (2015)
Moore, Sandra; Miwanda, Berthe; Sadji, Adodo Yao; Thefenne, Hélène; Jeddi, Fakhri; Rebaudet, Stanislas; de Boeck, Hilde; Bidjada, Bawimodom; Depina, Jean-Jacques; Bompangue, Didier; Abedi, Aaron Aruna; Koivogui, Lamine; Keita, Sakoba; Garnotel, Eric; Plisnier, Pierre-Denis; Ruimy, Raymond; Thomson, Nicholas; Muyembe, Jean-Jacques; Piarroux, Renaud
A putative, novel coli surface antigen 8B (CS8B) of enterotoxigenic Escherichia coli. (2015)
Njoroge, Samuel M; Boinett, Christine J; Madé, Laure F; Ouko, Tom T; Fèvre, Eric M; Thomson, Nicholas R; Kariuki, Samuel
Genome Sequences of Three Salmonella enterica subsp. enterica Serovar Infantis Strains from Healthy Broiler Chicks in Hungary and in the United Kingdom. (2015)
Olasz, Ferenc; Nagy, Tibor; Szabó, Móni; Kiss, János; Szmolka, Ama; Barta, Endre; van Tonder, Andries; Thomson, Nicholas; Barrow, Paul; Nagy, Béla
A genomic island integrated into recA of Vibrio cholerae contains a divergent recA and provides multi-pathway protection from DNA damage. (2015)
Rapa, Rita A; Islam, Atiqul; Monahan, Leigh G; Mutreja, Ankur; Thomson, Nicholas; Charles, Ian G; Stokes, Harold W; Labbate, Maurizio
Directional gene flow and ecological separation in Yersinia enterocolitica. (2015)
Reuter, Sandra; Corander, Jukka; de Been, Mark; Harris, Simon; Cheng, Lu; Hall, Miquette; Thomson, Nicholas R; McNally, Alan
Novel R pipeline for analyzing Biolog Phenotypic MicroArray data. (2015)
Vehkala, Minna; Shubin, Mikhail; Connor, Thomas R; Thomson, Nicholas R; Corander, Jukka
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events. (2015)
Wong, Vanessa K; Baker, Stephen; Pickard, Derek J; Parkhill, Julian; Page, Andrew J; Feasey, Nicholas A; Kingsley, Robert A; Thomson, Nicholas R; Keane, Jacqueline A; Weill, François-Xavier; Edwards, David J; Hawkey, Jane; Harris, Simon R; Mather, Alison E; Cain, Amy K; Hadfield, James; Hart, Peter J; Thieu, Nga Tran Vu; Klemm, Elizabeth J; Glinos, Dafni A; Breiman, Robert F; Watson, Conall H; Kariuki, Samuel; Gordon, Melita A; Heyderman, Robert S; Okoro, Chinyere; Jacobs, Jan; Lunguya, Octavie; Edmunds, W John; Msefula, Chisomo; Chabalgoity, Jose A; Kama, Mike; Jenkins, Kylie; Dutta, Shanta; Marks, Florian; Campos, Josefina; Thompson, Corinne; Obaro, Stephen; MacLennan, Calman A; Dolecek, Christiane; Keddy, Karen H; Smith, Anthony M; Parry, Christopher M; Karkey, Abhilasha; Mulholland, E Kim; Campbell, James I; Dongol, Sabina; Basnyat, Buddha; Dufour, Muriel; Bandaranayake, Don; Naseri, Take Toleafoa; Singh, Shalini Pravin; Hatta, Mochammad; Newton, Paul; Onsare, Robert S; Isaia, Lupeoletalalei; Dance, David; Davong, Viengmon; Thwaites, Guy; Wijedoru, Lalith; Crump, John A; De Pinna, Elizabeth; Nair, Satheesh; Nilles, Eric J; Thanh, Duy Pham; Turner, Paul; Soeng, Sona; Valcanis, Mary; Powling, Joan; Dimovski, Karolina; Hogg, Geoff; Farrar, Jeremy; Holt, Kathryn E; Dougan, Gordon
2014
The population structure of Vibrio cholerae from the Chandigarh Region of Northern India. (2014)
Abd El Ghany, Moataz; Chander, Jagadish; Mutreja, Ankur; Rashid, Mamoon; Hill-Cawthorne, Grant A; Ali, Shahjahan; Naeem, Raeece; Thomson, Nicholas R; Dougan, Gordon; Pain, Arnab
Draft genome sequences of the type strains of Shigella flexneri held at Public Health England: comparison of classical phenotypic and novel molecular assays with whole genome sequence. (2014)
Ashton, Philip M; Baker, Kate S; Gentle, Amy; Wooldridge, David J; Thomson, Nicholas R; Dallman, Timothy J; Jenkins, Claire
The extant World War 1 dysentery bacillus NCTC1: a genomic analysis. (2014)
Baker, Kate S; Mather, Alison E; McGregor, Hannah; Coupland, Paul; Langridge, Gemma C; Day, Martin; Deheer-Graham, Ana; Parkhill, Julian; Russell, Julie E; Thomson, Nicholas R
A complete view of the genetic diversity of the Escherichia coli O-antigen biosynthesis gene cluster. (2014)
Iguchi, Atsushi; Iyoda, Sunao; Kikuchi, Taisei; Ogura, Yoshitoshi; Katsura, Keisuke; Ohnishi, Makoto; Hayashi, Tetsuya; Thomson, Nicholas R
Genome evolution and plasticity of Serratia marcescens, an important multidrug-resistant nosocomial pathogen. (2014)
Iguchi, Atsushi; Nagaya, Yutaka; Pradel, Elizabeth; Ooka, Tadasuke; Ogura, Yoshitoshi; Katsura, Keisuke; Kurokawa, Ken; Oshima, Kenshiro; Hattori, Masahira; Parkhill, Julian; Sebaihia, Mohamed; Coulthurst, Sarah J; Gotoh, Naomasa; Thomson, Nicholas R; Ewbank, Jonathan J; Hayashi, Tetsuya
Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling. (2014)
Lindgreen, Stinus; Umu, Sinan Uğur; Lai, Alicia Sook-Wei; Eldai, Hisham; Liu, Wenting; McGimpsey, Stephanie; Wheeler, Nicole E; Biggs, Patrick J; Thomson, Nick R; Barquist, Lars; Poole, Anthony M; Gardner, Paul P
Bacillary dysentery from World War 1 and NCTC1, the first bacterial isolate in the National Collection. (2014)
Mather, Alison E; Baker, Kate S; McGregor, Hannah; Coupland, Paul; Mather, Pamela L; Deheer-Graham, Ana; Parkhill, Julian; Bracegirdle, Philippa; Russell, Julie E; Thomson, Nicholas R
Parallel independent evolution of pathogenicity within the genus Yersinia. (2014)
Reuter, Sandra; Connor, Thomas R; Barquist, Lars; Walker, Danielle; Feltwell, Theresa; Harris, Simon R; Fookes, Maria; Hall, Miquette E; Petty, Nicola K; Fuchs, Thilo M; Corander, Jukka; Dufour, Muriel; Ringwood, Tamara; Savin, Cyril; Bouchier, Christiane; Martin, Liliane; Miettinen, Minna; Shubin, Mikhail; Riehm, Julia M; Laukkanen-Ninios, Riikka; Sihvonen, Leila M; Siitonen, Anja; Skurnik, Mikael; Falcão, Juliana Pfrimer; Fukushima, Hiroshi; Scholz, Holger C; Prentice, Michael B; Wren, Brendan W; Parkhill, Julian; Carniel, Elisabeth; Achtman, Mark; McNally, Alan; Thomson, Nicholas R
Plasmid deficiency in urogenital isolates of Chlamydia trachomatis reduces infectivity and virulence in a mouse model. (2014)
Sigar, Ira M; Schripsema, Justin H; Wang, Yibing; Clarke, Ian N; Cutcliffe, Lesley T; Seth-Smith, Helena MB; Thomson, Nicholas R; Bjartling, Carina; Unemo, Magnus; Persson, Kenneth; Ramsey, Kyle H
RNA-seq analysis of the influence of anaerobiosis and FNR on Shigella flexneri. (2014)
Vergara-Irigaray, Marta; Fookes, Maria C; Thomson, Nicholas R; Tang, Christoph M
2013
Genomic characterisation of invasive non-typhoidal Salmonella enterica Subspecies enterica Serovar Bovismorbificans isolates from Malawi. (2013)
Bronowski, Christina; Fookes, Maria C; Gilderthorp, Ruth; Ashelford, Kevin E; Harris, Simon R; Phiri, Amos; Hall, Neil; Gordon, Melita A; Wain, John; Hart, Charles A; Wigley, Paul; Thomson, Nicholas R; Winstanley, Craig
Horizontally acquired glycosyltransferase operons drive salmonellae lipopolysaccharide diversity. (2013)
Davies, Mark R; Broadbent, Sarah E; Harris, Simon R; Thomson, Nicholas R; van der Woude, Marjan W
Tracking the establishment of local endemic populations of an emergent enteric pathogen. (2013)
Holt, Kathryn E; Thieu Nga, Tran Vu; Thanh, Duy Pham; Vinh, Ha; Kim, Dong Wook; Vu Tra, My Phan; Campbell, James I; Hoang, Nguyen Van Minh; Vinh, Nguyen Thanh; Minh, Pham Van; Thuy, Cao Thu; Nga, Tran Thi Thu; Thompson, Corinne; Dung, Tran Thi Ngoc; Nhu, Nguyen Thi Khanh; Vinh, Phat Voong; Tuyet, Pham Thi Ngoc; Phuc, Hoang Le; Lien, Nguyen Thi Nam; Phu, Bui Duc; Ai, Nguyen Thi Thuy; Tien, Nguyen Manh; Dong, Nguyen; Parry, Christopher M; Hien, Tran Tinh; Farrar, Jeremy J; Parkhill, Julian; Dougan, Gordon; Thomson, Nicholas R; Baker, Stephen
Children must be protected from the tobacco industry's marketing tactics. (2013)
Hopkinson, Nicholas; Wallis, Colin; Higgins, Bernard; Gaduzo, Stephen; Sherrington, Rebecca; Keilty, Sarah; Stern, Myra; Britton, John; Bush, Andrew; Moxham, John; Sylvester, Karl; Griffiths, Valerie; Sutherland, Tim; Crossingham, Iain; Raju, Raghu; Spencer, Charlotte; Safavi, Shahideh; Deegan, Paul; Seymour, John; Hickman, Katherine; Hughes, John; Wieboldt, Jason; Shaheen, Fizah; Peedell, Clive; Mackenzie, Nesta; Nicholl, David; Jolley, Caroline; Crooks, Gillian; Crooks, Gillian; Dow, Claire; Deveson, Pete; Bintcliffe, Oliver; Gray, Barry; Kumar, Sanjay; Haney, Sarah; Docherty, Marianne; Thomas, Angela; Chua, Felix; Dwarakanath, Akshay; Summers, Geoffrey; Prowse, Keith; Lytton, Stephen; Ong, Yee Ean; Graves, Jennifer; Banerjee, Tushar; English, Peter; Leonard, Andrew; Brunet, Martin; Chaudhry, Nauman; Ketchell, Robert Ian; Cummings, Natalie; Lebus, Jenny; Sharp, Charles; Meadows, Chris; Harle, Amelie; Stewart, Tara; Parry, Diane; Templeton-Wright, Suzanne; Moore-Gillon, John; Stratford- Martin, James; Saini, Sarvesh; Matusiewicz, Simon; Merritt, Simon; Dowson, Lee; Satkunam, Karnan; Hodgson, Luke; Suh, Eui-Sik; Durrington, Hannah; Browne, Emma; Walters, Nicola; Steier, Joerg; Barry, Simon; Griffiths, Mark; Hart, Nicholas; Nikolic, Marko; Berry, Matthew; Thomas, Ajit; Miller, Joy; McNicholl, Diarmuid; Marsden, Paul; Warwick, Geoffrey; Barr, Laura; Adeboyeku, David; Mohd Noh, Mohd Shahrin; Griffiths, Paul; Davies, Lisa; Quint, Jennifer; Lyall, Rebecca; Shribman, Jonathan; Collins, Andrea; Goldman, Jon; Bloch, Susannah; Gill, Alison; Man, William; Christopher, Anne; Yasso, Razouqi; Rajhan, Ashwin; Shrikrishna, Dinesh; Moore, Caroline; Absalom, Gareth; Booton, Richard; Fowler, Robert William; Mackinlay, Carolyn; Sapey, Elizabeth; Lock, Sara; Walker, Paul; Jha, Akhilesh; Satia, Imran; Bradley, Bethia; Mustfa, Naveed; Haqqee, Raana; Thomas, Matt; Patel, Anant; Redington, Anthony; Pillai, Anilkumar; Keaney, Niall; Fowler, Stephen; Lowe, Lesley; Brennan, Amanda; Morrison, Douglas; Murray, Clare; Hankinson, Jenny; Dutta, P; Maddocks, Matthew; Pengo, Martino; Curtis, Katrina; Rafferty, Gerrard; Hutchinson, John; Whitfield, Ruth; Turner, Steve; Breen, Ronan; Naveed, Shams-un-nisa; Goode, Chris; Esterbrook, Georgina; Ahmed, Liju; Walker, Woolf; Ford, David; Connett, Gary; Davidson, Philip; Elston, Will; Stanton, Andrew; Morgan, David; Myerson, James; Maxwell, David; Harrris, Ann; Parmar, Sonia; Houghton, Catherine; Winter, Robert; Puthucheary, Zudin; Thomson, Fiona; Sturney, Sharon; Harvey, John; Haslam, Patricia L; Patel, Irem; Jennings, David; Range, Simon; Mallia-Milanes, Brendan; Collett, Anne; Tate, Paul; Russell, Richard; Feary, Johanna; O'Driscoll, Ronan; Eaden, James; Round, Jonathan; Sharkey, Emma; Montgomery, Mary; Vaughan, Sophie; Scheele, Kate; Lithgow, Anna; Partridge, Samuel; Chavasse, Richard; Restrick, Louise; Agrawal, Sanjay; Abdallah, Said; Lacy-Colson, Amruta; Adams, Nick; Mitchell, Sally; Haja Mydin, Helmy; Ward, Ann; Denniston, Sarah; Steel, Mark; Ghosh, Dipansu; Connellan, Stephen; Rigge, Lucy; Williams, Ruth; Grove, Alison; Anwar, Sadia; Dobson, Lee; Hosker, Harold; Stableforth, David; Greening, Neil; Howell, Tim; Casswell, Georgina; Davies, Sarah; Tunnicliffe, Georgia; Mitchelmore, Philip; Phitidis, Elpida; Robinson, Louise; Prowse, Keith; Bafadhel, Mona; Robinson, Grace; Boland, Alison; Lipman, Marc; Bourke, Stephen; Kaul, Sundeep; Cowie, Calvin; Forrest, Ian; Starren, Elizabeth; Burke, Hannah; Furness, John; Bhowmik, Angshu; Everett, Caroline; Seaton, Douglas; Holmes, Steve; Doe, Simon; Parker, Samuel; Graham, Annika; Paterson, Ian; Maqsood, Usman; Ohri, Chandra; Iles, Peter; Kemp, Samuel; Iftikhar, Ahsan; Carlin, Chris; Fletcher, Tim; Emerson, Peter; Beasley, Victoria; Ramsay, Michelle; Buttery, Robert; Mungall, Sarah; Crooks, Stephen; Ridyard, John; Ross, David; Guadagno, Alison; Holden, Emma; Coutts, Ian; Cullen, Kathy; O'Connor, Sally; Barker, Jack; Sloper, Katherine; Watson, John; Smith, Peter; Anderson, Paul; Brown, Louise; Nyman, Cyril; Milburn, Heather; Clive, Amelia; Serlin, Matthew; Bolton, Charlotte; Fuld, Jonathan; Powell, Helen; Dayer, Mark; Woolhouse, Ian; Georgiadi, Adamantia; Leonard, Helen; Dodd, James; Campbell, Ian; Ruiz, Gary; Zurek, Andrew; Paton, James Y; Malin, Adam; Wood, Fraser; Hynes, Gareth; Connell, David; Spencer, David; Brown, Sarah; Smith, David; Cooper, David; O'Kane, Cecilia; Hicks, Alex; Creagh-Brown, Ben; Lordan, James; Nickol, Annabel; Primhak, Robert; Fleming, Louise; Powrie, Duncan; Brown, Joanna; Zoumot, Zaid; Elkin, Sarah; Szram, Joanna; Scaffardi, Anthony; Marshall, Robert; Macdonald, Ian; Lightbody, Darren; Farmer, Ray; Wheatley, Iain; Radnan, Paul; Lane, Ian; Booth, Andrew; Tilbrook, Sean; Capstick, Toby; Hewitt, Lee; McHugh, Martin; Nelson, Christopher; Wilson, Patrick; Padmanaban, Vijay; White, John; Davison, John; O'Callaghan, Una; Hodson, Matthew; Edwards, John; Campbell, Colin; Ward, Simon; Wooler, Edwina; Ringrose, Elizabeth; Bridges, Diana; Matthew Hodson; John Edwards; Colin Campbell; Simon Ward; Edwina Wooler; Elizabeth Ringrose; Diana Bridges; Rosalind Backham; Kim Randall; Tracey Mathieson; Long, Alex; Parkes, Marilyn; Clarke, Sarah; Allen, Bev; Connelly, Carol; Forster, Georgia; Hoadley, Jacky; Martin, Katharine; Barnham, Kate; Khan, Katie; Munday, Maureen; Edwards, Catherine; O'Hara, Doreen; Turner, Sally; Pieri-Davies, Sue; Ford, Kate; Daniels, Tracey; Wright, Joanne; Towns, Rebecca; Fern, Karen; Butcher, Jane; Burgin, Karen; Winter, Barbara; Freeman, Debbie; Olive, Sandra; Gray, Linda; Pye, Kathy; Roots, Debbie; Cox, Nicola; Davies, Carol-Anne; Wicker, Jacquelyne; Hilton, Kay; Lloyd, Jananee; MacBean, Vicky; Wood, Marion; Kowal, Julia; Downs, Janis; Ryan, Helen; Guyatt, Fran; Nicoll, Debby; Lyons, Elizabeth; Narasimhan, Divya; Rodman, Anne; Walmsley, Sandy; Newey, Alison; Buxton, Maria; Dewar, Maria; Cooper, Angela; Reilly, Jacqui; Lloyd, Julie; Macmillan, Alison Bennett; Roots, Debbie; Olley, Amy; Voase, Nia; Martin, Sarah; McCarvill, Iona; Christensen, Anne; Agate, Rowan; Heslop, Karen; Timlett, Amber; Hailes, Karen; Davey, Claire; Pawulska, Barbara; Lane, Amber; Ioakim, Shona; Hough, Alexandra; Treharne, Jo; Jones, Helen; Winter-Burke, Alice; Miller, Lauren; Connolly, Bronwen; Bingham, Lyn; Fraser, Una; Bott, Julia; Johnston, Carol; Graham, Alison; Curry, Denise; Sumner, Helen; Costello, Carol Ann; Bartoszewicz, Charlotte; Badman, Ros; Williamson, Kathryn; Taylor, Amy; Purcell, Helen; Barnett, Emma; Molloy, Alanna; Crawfurd, Laura; Collins, Nicola; Monaghan, Valerie; Mir, Misbah; Lord, Victoria; Stocks, Janet; Edwards, Adrian; Greenhalgh, Trish; Lenney, Warren; McKee, Martin; McAuley, Danny; Majeed, Azeem; Cookson, John; Baker, Emma; Janes, Sam; Wedzicha, Wisia; Lomas Dean, David; Harrison, Brian; Davison, Tony; Calverley, Peter; Wilson, Robert; Stockley, Robert; Ayres, Jon; Gibson, John; Simpson, John; Burge, Sherwood; Warner, John; Lenney, Warren; Thomson, Neil; Davies, Peter; Woodcock, Ashley; Woodhead, Mark; Spiro, Stephen; Ormerod, Lawrence; Bothamley, Graham; Partridge, Martyn; Shields, Michael; Montgomery, Hugh; Simonds, Anita; Barnes, Peter; Durham, Stephen; Malone, Sarah; Arabnia, Gilda; Olivier, Sharon; Gardiner, Karen; Edwards, Sheila
A study on the geophylogeny of clinical and environmental Vibrio cholerae in Kenya. (2013)
Kiiru, John; Mutreja, Ankur; Mohamed, Ahmed Abade; Kimani, Racheal W; Mwituria, Joyce; Sanaya, Robert Onsare; Muyodi, Jane; Revathi, Gunturu; Parkhill, Julian; Thomson, Nicholas; Dougan, Gordon; Kariuki, Samuel
Genome and transcriptome adaptation accompanying emergence of the definitive type 2 host-restricted Salmonella enterica serovar Typhimurium pathovar. (2013)
Kingsley, Robert A; Kay, Sally; Connor, Thomas; Barquist, Lars; Sait, Leanne; Holt, Kathryn E; Sivaraman, Karthi; Wileman, Thomas; Goulding, David; Clare, Simon; Hale, Christine; Seshasayee, Aswin; Harris, Simon; Thomson, Nicholas R; Gardner, Paul; Rabsch, Wolfgang; Wigley, Paul; Humphrey, Tom; Parkhill, Julian; Dougan, Gordon
Distinguishable epidemics of multidrug-resistant Salmonella Typhimurium DT104 in different hosts. (2013)
Mather, AE; Reid, SWJ; Maskell, DJ; Parkhill, J; Fookes, MC; Harris, SR; Brown, DJ; Coia, JE; Mulvey, MR; Gilmour, MW; Petrovska, L; de Pinna, E; Kuroda, M; Akiba, M; Izumiya, H; Connor, TR; Suchard, MA; Lemey, P; Mellor, DJ; Haydon, DT; Thomson, NR
Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture. (2013)
Seth-Smith, Helena MB; Harris, Simon R; Skilton, Rachel J; Radebe, Frans M; Golparian, Daniel; Shipitsyna, Elena; Duy, Pham Thanh; Scott, Paul; Cutcliffe, Lesley T; O'Neill, Colette; Parmar, Surendra; Pitt, Rachel; Baker, Stephen; Ison, Catherine A; Marsh, Peter; Jalal, Hamid; Lewis, David A; Unemo, Magnus; Clarke, Ian N; Parkhill, Julian; Thomson, Nicholas R
2012
Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing. (2012)
Harris, Simon R; Clarke, Ian N; Seth-Smith, Helena MB; Solomon, Anthony W; Cutcliffe, Lesley T; Marsh, Peter; Skilton, Rachel J; Holland, Martin J; Mabey, David; Peeling, Rosanna W; Lewis, David A; Spratt, Brian G; Unemo, Magnus; Persson, Kenneth; Bjartling, Carina; Brunham, Robert; de Vries, Henry JC; Morré, Servaas A; Speksnijder, Arjen; Bébéar, Cécile M; Clerc, Maïté; de Barbeyrac, Bertille; Parkhill, Julian; Thomson, Nicholas R
Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe. (2012)
Holt, Kathryn E; Baker, Stephen; Weill, François-Xavier; Holmes, Edward C; Kitchen, Andrew; Yu, Jun; Sangal, Vartul; Brown, Derek J; Coia, John E; Kim, Dong Wook; Choi, Seon Young; Kim, Su Hee; da Silveira, Wanderley D; Pickard, Derek J; Farrar, Jeremy J; Parkhill, Julian; Dougan, Gordon; Thomson, Nicholas R
Fitness of Escherichia coli strains carrying expressed and partially silent IncN and IncP1 plasmids. (2012)
Humphrey, Bruce; Thomson, Nicholas R; Thomas, Christopher M; Brooks, Karen; Sanders, Mandy; Delsol, Anne A; Roe, John M; Bennett, Peter M; Enne, Virve I
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. (2012)
Kröger, Carsten; Dillon, Shane C; Cameron, Andrew DS; Papenfort, Kai; Sivasankaran, Sathesh K; Hokamp, Karsten; Chao, Yanjie; Sittka, Alexandra; Hébrard, Magali; Händler, Kristian; Colgan, Aoife; Leekitcharoenphon, Pimlapas; Langridge, Gemma C; Lohan, Amanda J; Loftus, Brendan; Lucchini, Sacha; Ussery, David W; Dorman, Charles J; Thomson, Nicholas R; Vogel, Jörg; Hinton, Jay CD
New insights into the bacterial fitness-associated mechanisms revealed by the characterization of large plasmids of an avian pathogenic E. coli. (2012)
Mellata, Melha; Maddux, Jacob T; Nam, Timothy; Thomson, Nicholas; Hauser, Heidi; Stevens, Mark P; Mukhopadhyay, Suman; Sarker, Shameema; Crabbé, Aurélie; Nickerson, Cheryl A; Santander, Javier; Curtiss, Roy
2011
Sequence-based analysis uncovers an abundance of non-coding RNA in the total transcriptome of Mycobacterium tuberculosis. (2011)
Arnvig, Kristine B; Comas, Iñaki; Thomson, Nicholas R; Houghton, Joanna; Boshoff, Helena I; Croucher, Nicholas J; Rose, Graham; Perkins, Timothy T; Parkhill, Julian; Dougan, Gordon; Young, Douglas B
Salmonella bongori provides insights into the evolution of the Salmonellae. (2011)
Fookes, Maria; Schroeder, Gunnar N; Langridge, Gemma C; Blondel, Carlos J; Mammina, Caterina; Connor, Thomas R; Seth-Smith, Helena; Vernikos, Georgios S; Robinson, Keith S; Sanders, Mandy; Petty, Nicola K; Kingsley, Robert A; Bäumler, Andreas J; Nuccio, Sean-Paul; Contreras, Inés; Santiviago, Carlos A; Maskell, Duncan; Barrow, Paul; Humphrey, Tom; Nastasi, Antonino; Roberts, Mark; Frankel, Gad; Parkhill, Julian; Dougan, Gordon; Thomson, Nicholas R
Evidence for several waves of global transmission in the seventh cholera pandemic. (2011)
Mutreja, Ankur; Kim, Dong Wook; Thomson, Nicholas R; Connor, Thomas R; Lee, Je Hee; Kariuki, Samuel; Croucher, Nicholas J; Choi, Seon Young; Harris, Simon R; Lebens, Michael; Niyogi, Swapan Kumar; Kim, Eun Jin; Ramamurthy, T; Chun, Jongsik; Wood, James LN; Clemens, John D; Czerkinsky, Cecil; Nair, G Balakrish; Holmgren, Jan; Parkhill, Julian; Dougan, Gordon
Citrobacter rodentium is an unstable pathogen showing evidence of significant genomic flux. (2011)
Petty, Nicola K; Feltwell, Theresa; Pickard, Derek; Clare, Simon; Toribio, Ana L; Fookes, Maria; Roberts, Kevin; Monson, Rita; Nair, Satheesh; Kingsley, Robert A; Bulgin, Richard; Wiles, Siouxsie; Goulding, David; Keane, Thomas; Corton, Craig; Lennard, Nicola; Harris, David; Willey, David; Rance, Richard; Yu, Lu; Choudhary, Jyoti S; Churcher, Carol; Quail, Michael A; Parkhill, Julian; Frankel, Gad; Dougan, Gordon; Salmond, George PC; Thomson, Nicholas R
2010
Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042. (2010)
Chaudhuri, Roy R; Sebaihia, Mohammed; Hobman, Jon L; Webber, Mark A; Leyton, Denisse L; Goldberg, Martin D; Cunningham, Adam F; Scott-Tucker, Anthony; Ferguson, Paul R; Thomas, Christopher M; Frankel, Gad; Tang, Christoph M; Dudley, Edward G; Roberts, Ian S; Rasko, David A; Pallen, Mark J; Parkhill, Julian; Nataro, James P; Thomson, Nicholas R; Henderson, Ian R
Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. (2010)
Morelli, Giovanna; Song, Yajun; Mazzoni, Camila J; Eppinger, Mark; Roumagnac, Philippe; Wagner, David M; Feldkamp, Mirjam; Kusecek, Barica; Vogler, Amy J; Li, Yanjun; Cui, Yujun; Thomson, Nicholas R; Jombart, Thibaut; Leblois, Raphael; Lichtner, Peter; Rahalison, Lila; Petersen, Jeannine M; Balloux, Francois; Keim, Paul; Wirth, Thierry; Ravel, Jacques; Yang, Ruifu; Carniel, Elisabeth; Achtman, Mark
The sudden dominance of blaCTX-M harbouring plasmids in Shigella spp. Circulating in Southern Vietnam. (2010)
Nguyen, Nhu Thi Khanh; Ha, Vinh; Tran, Nga Vu Thieu; Stabler, Richard; Pham, Duy Thanh; Le, Thi Minh Vien; van Doorn, H Rogier; Cerdeño-Tárraga, Ana; Thomson, Nicholas; Campbell, James; Nguyen, Van Minh Hoang; Tran, Thi Thu Nga; Pham, Minh Van; Cao, Thuy Thu; Wren, Brendan; Farrar, Jeremy; Baker, Stephen
Evidence for a lineage of virulent bacteriophages that target Campylobacter. (2010)
Timms, Andrew R; Cambray-Young, Joanna; Scott, Andrew E; Petty, Nicola K; Connerton, Phillippa L; Clarke, Louise; Seeger, Kathy; Quail, Mike; Cummings, Nicola; Maskell, Duncan J; Thomson, Nicholas R; Connerton, Ian F
2009
Genomic and phenotypic variation in epidemic-spanning Salmonella enterica serovar Enteritidis isolates. (2009)
Betancor, Laura; Yim, Lucia; Fookes, Maria; Martinez, Araci; Thomson, Nicholas R; Ivens, Alasdair; Peters, Sarah; Bryant, Clare; Algorta, Gabriela; Kariuki, Samuel; Schelotto, Felipe; Maskell, Duncan; Dougan, Gordon; Chabalgoity, Jose A
DNAPlotter: circular and linear interactive genome visualization. (2009)
Carver, Tim; Thomson, Nick; Bleasby, Alan; Berriman, Matthew; Parkhill, Julian
A simple method for directional transcriptome sequencing using Illumina technology. (2009)
Croucher, Nicholas J; Fookes, Maria C; Perkins, Timothy T; Turner, Daniel J; Marguerat, Samuel B; Keane, Thomas; Quail, Michael A; He, Miao; Assefa, Sammey; Bähler, Jürg; Kingsley, Robert A; Parkhill, Julian; Bentley, Stephen D; Dougan, Gordon; Thomson, Nicholas R
Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi. (2009)
Holt, Kathryn E; Thomson, Nicholas R; Wain, John; Langridge, Gemma C; Hasan, Rumina; Bhutta, Zulfiqar A; Quail, Michael A; Norbertczak, Halina; Walker, Danielle; Simmonds, Mark; White, Brian; Bason, Nathalie; Mungall, Karen; Dougan, Gordon; Parkhill, Julian
Evolutionary diversification of an ancient gene family (rhs) through C-terminal displacement. (2009)
Jackson, Andrew P; Thomas, Gavin H; Parkhill, Julian; Thomson, Nicholas R
A strand-specific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi. (2009)
Perkins, Timothy T; Kingsley, Robert A; Fookes, Maria C; Gardner, Paul P; James, Keith D; Yu, Lu; Assefa, Samuel A; He, Miao; Croucher, Nicholas J; Pickard, Derek J; Maskell, Duncan J; Parkhill, Julian; Choudhary, Jyoti; Thomson, Nicholas R; Dougan, Gordon
The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli. (2009)
Petty, Nicola K; Bulgin, Richard; Crepin, Valerie F; Cerdeño-Tárraga, Ana M; Schroeder, Gunnar N; Quail, Michael A; Lennard, Nicola; Corton, Craig; Barron, Andrew; Clark, Louise; Toribio, Ana L; Parkhill, Julian; Dougan, Gordon; Frankel, Gad; Thomson, Nicholas R
Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain. (2009)
Seth-Smith, Helena MB; Harris, Simon R; Persson, Kenneth; Marsh, Pete; Barron, Andrew; Bignell, Alexandra; Bjartling, Carina; Clark, Louise; Cutcliffe, Lesley T; Lambden, Paul R; Lennard, Nicola; Lockey, Sarah J; Quail, Michael A; Salim, Omar; Skilton, Rachel J; Wang, Yibing; Holland, Martin J; Parkhill, Julian; Thomson, Nicholas R; Clarke, Ian N
Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens. (2009)
Silby, Mark W; Cerdeño-Tárraga, Ana M; Vernikos, Georgios S; Giddens, Stephen R; Jackson, Robert W; Preston, Gail M; Zhang, Xue-Xian; Moon, Christina D; Gehrig, Stefanie M; Godfrey, Scott AC; Knight, Christopher G; Malone, Jacob G; Robinson, Zena; Spiers, Andrew J; Harris, Simon; Challis, Gregory L; Yaxley, Alice M; Harris, David; Seeger, Kathy; Murphy, Lee; Rutter, Simon; Squares, Rob; Quail, Michael A; Saunders, Elizabeth; Mavromatis, Konstantinos; Brettin, Thomas S; Bentley, Stephen D; Hothersall, Joanne; Stephens, Elton; Thomas, Christopher M; Parkhill, Julian; Levy, Stuart B; Rainey, Paul B; Thomson, Nicholas R
2008
Analysis of the role of 13 major fimbrial subunits in colonisation of the chicken intestines by Salmonella enterica serovar Enteritidis reveals a role for a novel locus. (2008)
Clayton, Debra J; Bowen, Alison J; Hulme, Scott D; Buckley, Anthony M; Deacon, Victoria L; Thomson, Nicholas R; Barrow, Paul A; Morgan, Eirwen; Jones, Michael A; Watson, Michael; Stevens, Mark P
The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants. (2008)
Crossman, Lisa C; Gould, Virginia C; Dow, J Maxwell; Vernikos, Georgios S; Okazaki, Aki; Sebaihia, Mohammed; Saunders, David; Arrowsmith, Claire; Carver, Tim; Peters, Nicholas; Adlem, Ellen; Kerhornou, Arnaud; Lord, Angela; Murphy, Lee; Seeger, Katharine; Squares, Robert; Rutter, Simon; Quail, Michael A; Rajandream, Mari-Adele; Harris, David; Churcher, Carol; Bentley, Stephen D; Parkhill, Julian; Thomson, Nicholas R; Avison, Matthew B
The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay. (2008)
Hjerde, Erik; Lorentzen, Marit Sjo; Holden, Matthew Tg; Seeger, Kathy; Paulsen, Steinar; Bason, Nathalie; Churcher, Carol; Harris, David; Norbertczak, Halina; Quail, Michael A; Sanders, Suzanne; Thurston, Scott; Parkhill, Julian; Willassen, Nils Peder; Thomson, Nicholas R
Genome evolution of Wolbachia strain wPip from the Culex pipiens group. (2008)
Klasson, Lisa; Walker, Thomas; Sebaihia, Mohammed; Sanders, Mandy J; Quail, Michael A; Lord, Angela; Sanders, Susanne; Earl, Julie; O'Neill, Scott L; Thomson, Nicholas; Sinkins, Steven P; Parkhill, Julian
2007
Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes. (2007)
Sebaihia, Mohammed; Peck, Michael W; Minton, Nigel P; Thomson, Nicholas R; Holden, Matthew TG; Mitchell, Wilfrid J; Carter, Andrew T; Bentley, Stephen D; Mason, David R; Crossman, Lisa; Paul, Catherine J; Ivens, Alasdair; Wells-Bennik, Marjon HJ; Davis, Ian J; Cerdeño-Tárraga, Ana M; Churcher, Carol; Quail, Michael A; Chillingworth, Tracey; Feltwell, Theresa; Fraser, Audrey; Goodhead, Ian; Hance, Zahra; Jagels, Kay; Larke, Natasha; Maddison, Mark; Moule, Sharon; Mungall, Karen; Norbertczak, Halina; Rabbinowitsch, Ester; Sanders, Mandy; Simmonds, Mark; White, Brian; Whithead, Sally; Parkhill, Julian
Comparative genome analyses of the pathogenic Yersiniae based on the genome sequence of Yersinia enterocolitica strain 8081. (2007)
Thomson, Nicholas R; Howard, Sarah; Wren, Brendan W; Prentice, Michael B
Genetic flux over time in the Salmonella lineage. (2007)
Vernikos, Georgios S; Thomson, Nicholas R; Parkhill, Julian
Ankyrin repeat domain-encoding genes in the wPip strain of Wolbachia from the Culex pipiens group. (2007)
Walker, Thomas; Klasson, Lisa; Sebaihia, Mohammed; Sanders, Mandy J; Thomson, Nicholas R; Parkhill, Julian; Sinkins, Steven P
2006
Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. (2006)
Riley, Monica; Abe, Takashi; Arnaud, Martha B; Berlyn, Mary KB; Blattner, Frederick R; Chaudhuri, Roy R; Glasner, Jeremy D; Horiuchi, Takashi; Keseler, Ingrid M; Kosuge, Takehide; Mori, Hirotada; Perna, Nicole T; Plunkett, Guy; Rudd, Kenneth E; Serres, Margrethe H; Thomas, Gavin H; Thomson, Nicholas R; Wishart, David; Wanner, Barry L
The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome. (2006)
Sebaihia, Mohammed; Wren, Brendan W; Mullany, Peter; Fairweather, Neil F; Minton, Nigel; Stabler, Richard; Thomson, Nicholas R; Roberts, Adam P; Cerdeño-Tárraga, Ana M; Wang, Hongmei; Holden, Matthew TG; Wright, Anne; Churcher, Carol; Quail, Michael A; Baker, Stephen; Bason, Nathalie; Brooks, Karen; Chillingworth, Tracey; Cronin, Ann; Davis, Paul; Dowd, Linda; Fraser, Audrey; Feltwell, Theresa; Hance, Zahra; Holroyd, Simon; Jagels, Kay; Moule, Sharon; Mungall, Karen; Price, Claire; Rabbinowitsch, Ester; Sharp, Sarah; Simmonds, Mark; Stevens, Kim; Unwin, Louise; Whithead, Sally; Dupuy, Bruno; Dougan, Gordon; Barrell, Bart; Parkhill, Julian
The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081. (2006)
Thomson, Nicholas R; Howard, Sarah; Wren, Brendan W; Holden, Matthew TG; Crossman, Lisa; Challis, Gregory L; Churcher, Carol; Mungall, Karen; Brooks, Karen; Chillingworth, Tracey; Feltwell, Theresa; Abdellah, Zahra; Hauser, Heidi; Jagels, Kay; Maddison, Mark; Moule, Sharon; Sanders, Mandy; Whitehead, Sally; Quail, Michael A; Dougan, Gordon; Parkhill, Julian; Prentice, Michael B
The complete genome sequence and comparative genome analysis of the high pathogenicity Yersinia enterocolitica strain 8081. (2006)
Thomson, Nicholas R; Howard, Sarah; Wren, Brendan W; Holden, Matthew TG; Crossman, Lisa; Challis, Gregory L; Churcher, Carol; Mungall, Karen; Brooks, Karen; Chillingworth, Tracey; Feltwell, Theresa; Abdellah, Zahra; Hauser, Heidi; Jagels, Kay; Maddison, Mark; Moule, Sharon; Sanders, Mandy; Whitehead, Sally; Quail, Michael A; Dougan, Gordon; Parkhill, Julian; Prentice, Michael B
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The genome of Rhizobium leguminosarum has recognizable core and accessory components. (2006)
Young, J Peter W; Crossman, Lisa C; Johnston, Andrew WB; Thomson, Nicholas R; Ghazoui, Zara F; Hull, Katherine H; Wexler, Margaret; Curson, Andrew RJ; Todd, Jonathan D; Poole, Philip S; Mauchline, Tim H; East, Alison K; Quail, Michael A; Churcher, Carol; Arrowsmith, Claire; Cherevach, Inna; Chillingworth, Tracey; Clarke, Kay; Cronin, Ann; Davis, Paul; Fraser, Audrey; Hance, Zahra; Hauser, Heidi; Jagels, Kay; Moule, Sharon; Mungall, Karen; Norbertczak, Halina; Rabbinowitsch, Ester; Sanders, Mandy; Simmonds, Mark; Whitehead, Sally; Parkhill, Julian
2004
Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei. (2004)
Holden, Matthew TG; Titball, Richard W; Peacock, Sharon J; Cerdeño-Tárraga, Ana M; Atkins, Timothy; Crossman, Lisa C; Pitt, Tyrone; Churcher, Carol; Mungall, Karen; Bentley, Stephen D; Sebaihia, Mohammed; Thomson, Nicholas R; Bason, Nathalie; Beacham, Ifor R; Brooks, Karen; Brown, Katherine A; Brown, Nat F; Challis, Greg L; Cherevach, Inna; Chillingworth, Tracy; Cronin, Ann; Crossett, Ben; Davis, Paul; DeShazer, David; Feltwell, Theresa; Fraser, Audrey; Hance, Zahra; Hauser, Heidi; Holroyd, Simon; Jagels, Kay; Keith, Karen E; Maddison, Mark; Moule, Sharon; Price, Claire; Quail, Michael A; Rabbinowitsch, Ester; Rutherford, Kim; Sanders, Mandy; Simmonds, Mark; Songsivilai, Sirirurg; Stevens, Kim; Tumapa, Sarinna; Vesaratchavest, Monkgol; Whitehead, Sally; Yeats, Corin; Barrell, Bart G; Oyston, Petra CF; Parkhill, Julian
2002
Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). (2002)
Bentley, SD; Chater, KF; Cerdeño-Tárraga, A-M; Challis, GL; Thomson, NR; James, KD; Harris, DE; Quail, MA; Kieser, H; Harper, D; Bateman, A; Brown, S; Chandra, G; Chen, CW; Collins, M; Cronin, A; Fraser, A; Goble, A; Hidalgo, J; Hornsby, T; Howarth, S; Huang, C-H; Kieser, T; Larke, L; Murphy, L; Oliver, K; O'Neil, S; Rabbinowitsch, E; Rajandream, M-A; Rutherford, K; Rutter, S; Seeger, K; Saunders, D; Sharp, S; Squares, R; Squares, S; Taylor, K; Warren, T; Wietzorrek, A; Woodward, J; Barrell, BG; Parkhill, J; Hopwood, DA
2001
Genome sequence of Yersinia pestis, the causative agent of plague. (2001)
Parkhill, J; Wren, BW; Thomson, NR; Titball, RW; Holden, MT; Prentice, MB; Sebaihia, M; James, KD; Churcher, C; Mungall, KL; Baker, S; Basham, D; Bentley, SD; Brooks, K; Cerdeño-Tárraga, AM; Chillingworth, T; Cronin, A; Davies, RM; Davis, P; Dougan, G; Feltwell, T; Hamlin, N; Holroyd, S; Jagels, K; Karlyshev, AV; Leather, S; Moule, S; Oyston, PC; Quail, M; Rutherford, K; Simmonds, M; Skelton, J; Stevens, K; Whitehead, S; Barrell, BG
