Items where Author is "Tully, Damien C"

Year Item Type Full Text

Article

Inferring the multiplicity of founder variants initiating HIV-1 infection: a systematic review and individual patient data meta-analysis. (2023) Baxter, James; Langhorne, Sarah; Shi, Ting; Tully, Damien C; Villabona-Arenas, Ch Julián; Hué, Stéphane; Albert, Jan; Leigh Brown, Andrew; Atkins, Katherine E

Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. (2021) Davies, Nicholas G; Abbott, Sam; Barnard, Rosanna C; Jarvis, Christopher I; Kucharski, Adam J; Munday, James D; Pearson, Carl AB; Russell, Timothy W; Tully, Damien C; Washburne, Alex D; Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D; CMMID COVID-19 Working Group; COVID-19 Genomics UK (COG-UK) Consortium; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M; Funk, Sebastian; Jit, Mark; Atkins, Katherine E; Edmunds, W John

Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. (2020) Davies, Nicholas G; Abbott, Sam; Barnard, Rosanna C; Jarvis, Christopher I; Kucharski, Adam J; Munday, James D; Pearson, Carl AB; Russell, Timothy W; Tully, Damien C; Washburne, Alex D; Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M; Funk, Sebastian; Jit, Mark; Atkins, Katherine E; Edmunds, W John picture_as_pdf

Lower Broadly Neutralizing Antibody Responses in Female Versus Male HIV-1 Infected Injecting Drug Users. (2019) Euler, Zelda; VAN DEN Kerkhof, Tom L; Kouyos, Roger D; Tully, Damien C; Allen, Todd M; Trkola, Alexandra; Sanders, Rogier W; Schuitemaker, Hanneke; VAN Gils, Marit J

Role of HCV Viremia in Corroborated HCV Transmission Events Within Young Adult Injecting Partnerships. (2019) Hahn, Judith A; Tully, Damien C; Evans, Jennifer L; Morris, Meghan D; Briceno, Alya; Bean, David J; Allen, Todd M; Page, Kimberly

High resolution sequencing of hepatitis C virus reveals limited intra-hepatic compartmentalization in end-stage liver disease. (2017) Hedegaard, Ditte L; Tully, Damien C; Rowe, Ian A; Reynolds, Gary M; Bean, David J; Hu, Ke; Davis, Christopher; Wilhelm, Annika; Ogilvie, Colin B; Power, Karen A; Tarr, Alexander W; Kelly, Deirdre; Allen, Todd M; Balfe, Peter; McKeating, Jane A

Hepatitis C Virus Transmission Clusters in Public Health and Correctional Settings, Wisconsin, USA, 2016-20171. (2021) Hochstatter, Karli R; Tully, Damien C; Power, Karen A; Koepke, Ruth; Akhtar, Wajiha Z; Prieve, Audrey F; Whyte, Thomas; Bean, David J; Seal, David W; Allen, Todd M; Westergaard, Ryan P

Mamu-B*17+ Rhesus Macaques Vaccinated with env, vif, and nef Manifest Early Control of SIVmac239 Replication. (2018) Martins, Mauricio A; Tully, Damien C; Pedreño-Lopez, Núria; von Bredow, Benjamin; Pauthner, Matthias G; Shin, Young C; Yuan, Maoli; Lima, Noemia S; Bean, David J; Gonzalez-Nieto, Lucas; Domingues, Aline; Gutman, Martin J; Maxwell, Helen S; Magnani, Diogo M; Ricciardi, Michael J; Bailey, Varian K; Altman, John D; Burton, Dennis R; Ejima, Keisuke; Allison, David B; Evans, David T; Rakasz, Eva G; Parks, Christopher L; Bonaldo, Myrna C; Capuano, Saverio; Lifson, Jeffrey D; Desrosiers, Ronald C; Allen, Todd M; Watkins, David I

Rare Control of SIVmac239 Infection in a Vaccinated Rhesus Macaque. (2017) Martins, Mauricio A; Tully, Damien C; Shin, Young C; Gonzalez-Nieto, Lucas; Weisgrau, Kim L; Bean, David J; Gadgil, Rujuta; Gutman, Martin J; Domingues, Aline; Maxwell, Helen S; Magnani, Diogo M; Ricciardi, Michael; Pedreño-Lopez, Nuria; Bailey, Varian; Cruz, Michael A; Lima, Noemia S; Bonaldo, Myrna C; Altman, John D; Rakasz, Eva; Capuano, Saverio; Reimann, Keith A; Piatak, Michael; Lifson, Jeffrey D; Desrosiers, Ronald C; Allen, Todd M; Watkins, David I

Capturing sequence diversity in metagenomes with comprehensive and scalable probe design. (2019) Metsky, Hayden C; Siddle, Katherine J; Gladden-Young, Adrianne; Qu, James; Yang, David K; Brehio, Patrick; Goldfarb, Andrew; Piantadosi, Anne; Wohl, Shirlee; Carter, Amber; Lin, Aaron E; Barnes, Kayla G; Tully, Damien C; Corleis, Bjӧrn; Hennigan, Scott; Barbosa-Lima, Giselle; Vieira, Yasmine R; Paul, Lauren M; Tan, Amanda L; Garcia, Kimberly F; Parham, Leda A; Odia, Ikponmwosa; Eromon, Philomena; Folarin, Onikepe A; Goba, Augustine; Viral Hemorrhagic Fever Consortium; Simon-Lorière, Etienne; Hensley, Lisa; Balmaseda, Angel; Harris, Eva; Kwon, Douglas S; Allen, Todd M; Runstadler, Jonathan A; Smole, Sandra; Bozza, Fernando A; Souza, Thiago ML; Isern, Sharon; Michael, Scott F; Lorenzana, Ivette; Gehrke, Lee; Bosch, Irene; Ebel, Gregory; Grant, Donald S; Happi, Christian T; Park, Daniel J; Gnirke, Andreas; Sabeti, Pardis C; Matranga, Christian B

Metagenomic Sequencing of HIV-1 in the Blood and Female Genital Tract Reveals Little Quasispecies Diversity during Acute Infection. (2018) Piantadosi, Anne; Freije, Catherine A; Gosmann, Christina; Ye, Simon; Park, Daniel; Schaffner, Stephen F; Tully, Damien C; Allen, Todd M; Dong, Krista L; Sabeti, Pardis C; Kwon, Douglas S

Use of Dried Blood Spots to Elucidate Full-Length Transmitted/Founder HIV-1 Genomes. (2016) Salazar-Gonzalez, Jesus F; Salazar, Maria G; Tully, Damien C; Ogilvie, Colin B; Learn, Gerald H; Allen, Todd M; Heath, Sonya L; Goepfert, Paul; Bar, Katharine J

The epigenetic landscape of T cell exhaustion. (2016) Sen, Debattama R; Kaminski, James; Barnitz, R Anthony; Kurachi, Makoto; Gerdemann, Ulrike; Yates, Kathleen B; Tsao, Hsiao-Wei; Godec, Jernej; LaFleur, Martin W; Brown, Flavian D; Tonnerre, Pierre; Chung, Raymond T; Tully, Damien C; Allen, Todd M; Frahm, Nicole; Lauer, Georg M; Wherry, E John; Yosef, Nir; Haining, W Nicholas

Leveraging genomic surveillance to enhance elimination strategies for hepatitis C virus. (2022) Tully, Damien C

Interferon-I: The Pièce de Résistance of HIV-1 Transmission? (2017) Tully, Damien C; Claiborne, Daniel T; Allen, Todd M

Identification of Genetically Related HCV Infections Among Self-Described Injecting Partnerships. (2021) Tully, Damien C; Hahn, Judith A; Bean, David J; Evans, Jennifer L; Morris, Meghan D; Page, Kimberly; Allen, Todd M

Differences in the Selection Bottleneck between Modes of Sexual Transmission Influence the Genetic Composition of the HIV-1 Founder Virus. (2016) Tully, Damien C; Ogilvie, Colin B; Batorsky, Rebecca E; Bean, David J; Power, Karen A; Ghebremichael, Musie; Bedard, Hunter E; Gladden, Adrianne D; Seese, Aaron M; Amero, Molly A; Lane, Kimberly; McGrath, Graham; Bazner, Suzane B; Tinsley, Jake; Lennon, Niall J; Henn, Matthew R; Brumme, Zabrina L; Norris, Philip J; Rosenberg, Eric S; Mayer, Kenneth H; Jessen, Heiko; Kosakovsky Pond, Sergei L; Walker, Bruce D; Altfeld, Marcus; Carlson, Jonathan M; Allen, Todd M

Phylogenetic interpretation during outbreaks requires caution. (2020) Villabona-Arenas, Ch Julián; Hanage, William P; Tully, Damien C

Early Transcriptional Divergence Marks Virus-Specific Primary Human CD8+ T Cells in Chronic versus Acute Infection. (2017) Wolski, David; Foote, Peter K; Chen, Diana Y; Lewis-Ximenez, Lia L; Fauvelle, Catherine; Aneja, Jasneet; Walker, Andreas; Tonnerre, Pierre; Torres-Cornejo, Almudena; Kvistad, Daniel; Imam, Sabrina; Waring, Michael T; Tully, Damien C; Allen, Todd M; Chung, Raymond T; Timm, Jörg; Haining, W Nicholas; Kim, Arthur Y; Baumert, Thomas F; Lauer, Georg M

Evolutionary characteristics and genetic transmission patterns of predominant HIV-1 subtypes among men who have sex with men in China. (2019) Yuan, Huangbo; Liu, Zhenqiu; Wu, Xuefu; Wu, Mingshan; Fang, Qiwen; Tully, Damien C; Zhang, Tiejun