Approximate Bayesian Computation and Simulation-Based Inference for Complex Stochastic Epidemic Models

Trevelyan J McKinley; Ian Vernon; Ioannis Andrianakis; Nicky McCreesh ORCID logo; Jeremy E Oakley; Rebecca N Nsubuga; Michael Goldstein; Richard G White ORCID logo; (2018) Approximate Bayesian Computation and Simulation-Based Inference for Complex Stochastic Epidemic Models. Statistical science, 33 (1). pp. 4-18. ISSN 0883-4237 DOI: 10.1214/17-sts618
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Approximate Bayesian Computation (ABC) and other simulationbased inference methods are becoming increasingly used for inference in complex systems, due to their relative ease-of-implementation. We briefly review some of the more popular variants of ABC and their application in epidemiology, before using a real-world model of HIV transmission to illustrate some of challenges when applying ABC methods to high-dimensional, computationally intensive models.We then discuss an alternative approach- history matching-that aims to address some of these issues, and conclude with a comparison between these different methodologies.


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