Approximate Bayesian Computation and Simulation-Based Inference for Complex Stochastic Epidemic Models
Trevelyan J McKinley;
Ian Vernon;
Ioannis Andrianakis;
Nicky McCreesh ;
Jeremy E Oakley;
Rebecca N Nsubuga;
Michael Goldstein;
Richard G White ;
(2018)
Approximate Bayesian Computation and Simulation-Based Inference for Complex Stochastic Epidemic Models.
Statistical science, 33 (1).
pp. 4-18.
ISSN 0883-4237
DOI: 10.1214/17-sts618
Approximate Bayesian Computation (ABC) and other simulationbased inference methods are becoming increasingly used for inference in complex systems, due to their relative ease-of-implementation. We briefly review some of the more popular variants of ABC and their application in epidemiology, before using a real-world model of HIV transmission to illustrate some of challenges when applying ABC methods to high-dimensional, computationally intensive models.We then discuss an alternative approach- history matching-that aims to address some of these issues, and conclude with a comparison between these different methodologies.
Item Type | Article |
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Official URL | http://www.imstat.org/sts/future_papers.html |
ORCID: https://orcid.org/0000-0003-1409-8531
ORCID: https://orcid.org/0000-0003-4410-6635